KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:07 2014 Check: 00 .. Name: ENSP00000225927/1-743 Len: 754 Check: 1576 Weight: 1.00 Name: ENSBTAP00000054422/1-667 Len: 754 Check: 7152 Weight: 1.00 Name: ENSTTRP00000015556/1-744 Len: 754 Check: 6670 Weight: 1.00 Name: bmy_15661T0/1-734 Len: 754 Check: 4527 Weight: 1.00 Name: BACU007145/1-754 Len: 754 Check: 3333 Weight: 1.00 // 1 50 ENSP00000225927/1-743 MEAVAVAAAV GVLLLAGAGG AAGDEAREAA AVRALVARLL GPGPAADFSV ENSBTAP00000054422/1-667 MEAMGVAAAL GLLLLTA-GG STGDEAREAA AVRELLVRLL GPGPAAAFSV ENSTTRP00000015556/1-744 METVAVAAAL GFLLLTAAGG SAGDEAREAA AVRELLVRLL GPGPAASFSV bmy_15661T0/1-734 MEAVAVAAAL GFLLLTAAGG SAVDEAREAA AVRELLARLL GPGPAAAFSV BACU007145/1-754 MEAVAVAAGL GFLLLTAAGG SAGDEAREAA AVKELLARLL GPGPAAAFSV 51 100 ENSP00000225927/1-743 SVERALAAKP GLDTYSLGGG G--------- --AARVRVRG STGVAAAAGL ENSBTAP00000054422/1-667 SVERSLATES GLDTYRLSGG G--------- -AGTRVQVLG STGVAAAAGL ENSTTRP00000015556/1-744 SVERALAAES GLDTYRLSGG G--------- -VGTRVRVLG STGVAAAAGL bmy_15661T0/1-734 SVERALAAES GLDTYRLSGG G--------- -VGARVQVLG STGVAAAAGL BACU007145/1-754 SVERALAAES GLDTYRLSGG GXXXXXXXXX XXXXXXXXXX XXXXXXXXXL 101 150 ENSP00000225927/1-743 HRYLRDFCGC HVAWSGSQLR LPRPLPAVPG ELTEATPNRY RYYQNVCTQS ENSBTAP00000054422/1-667 HRYLRDFCGC HVAWSGSQLR LPQPLPAVPE ELTEATPNRY RYYQNVCTQS ENSTTRP00000015556/1-744 HHYLRDFCGC HVAWSGSQLR LPQPLPVVPE ELTEATPNRY RYYQNVCTQS bmy_15661T0/1-734 HRYLRDFCGC HVAWSGSQLR LPQPLPAVPE ELTEATPNRY RYYQNVCTQS BACU007145/1-754 HRYLRDFCGC HVAWSGSQLR LPQPLPAVPE ELTEATPNRY RYYQNVCTQS 151 200 ENSP00000225927/1-743 YSFVWWDWAR WEREIDWMAL NGINLALAWS GQEAIWQRVY LALGLTQAEI ENSBTAP00000054422/1-667 YSFLWWDWAR WEQEIDWMAL NGINLALAWS GQEAIWQRVY LALGLTQAEI ENSTTRP00000015556/1-744 YSFVWWDWAR WEQEIDWMAL NGINLALAWS GQEAIWQQVY LALGLTQTEI bmy_15661T0/1-734 YSFVWWDWAR WEQEIDWMAL NGINLALAWS GQEAIWQQVY LALGLTQTEI BACU007145/1-754 YSFVWWDWAR WEQEIDWMAL NGINLALAWS GQEAIWQRVY LALGLTQTEI 201 250 ENSP00000225927/1-743 NEFFTGPAFL AWGRMGNLHT WDGPLPPSWH IKQLYLQHRV LDQMRSFGMT ENSBTAP00000054422/1-667 DEYFTGPAFL AWGRMGNLHT WSGPLPPSWH LKQLYLQHRI LDRMRSFGMI ENSTTRP00000015556/1-744 DEYFTGPAFL AWGRMGNLHT WSGPLPPSWH LKQVYLQHRI LDRMRSFGMI bmy_15661T0/1-734 DEYFTGPAFL AWGRMGNLHT WSGPLPPSWH LKQLYLQHRI LDRMRSFGMI BACU007145/1-754 DEYFTGPAFL AWGRMGNLHT WSGPLPPSWH LKQLYLQHRI LDRMRSFGMI 251 300 ENSP00000225927/1-743 PVLPAFAGHV PEAVTRVFPQ VNVTKMGSWG HFNCSYSCSF LLAPEDPIFP ENSBTAP00000054422/1-667 PVLPAFAGHV PKALTRVFPQ VNVTQMGNWG HFNCSYSCSF LLAPEDPLFP ENSTTRP00000015556/1-744 PVLPAFAGHV PKALTRVFPQ ANITQMGRWG HFNCSYSCSF LLAPEDPLFP bmy_15661T0/1-734 PVLPAFAGHV PKALTRVFPQ INITQMGSWG HFNCSYSCSF LLAPEDPLFP BACU007145/1-754 PVLPAFAGHV PKALTRVFPQ INITQMGSWG HFNCSYSCSF LLAPEDPLFP 301 350 ENSP00000225927/1-743 IIGSLFLREL IKEFGTDHIY GADTFNEMQP PSSEPSYLAA ATTAVYEAMT ENSBTAP00000054422/1-667 LVGSLFLREL TKEFGTDHIY GADTFNEMQP PSSEPSYLAA ATAAVYQAMT ENSTTRP00000015556/1-744 MVGSLFLRAL TKEFGTDHIY GADTFNEMQP PSSEPSYLAA ATAAVYQAMI bmy_15661T0/1-734 IVGSLFLREL TKEFGTDHIY GADTFNEMQP PSSEPSYLAA ATATVYQAMI BACU007145/1-754 IVGSLFLREL TKEFGTDHIY GADTFNEMQP PSSEPSYLAA ATATVYQAMI 351 400 ENSP00000225927/1-743 AVDTEAVWLL QGWLFQHQPQ FWGPAQIRAV LGAVPRGRLL VLDLFAESQP ENSBTAP00000054422/1-667 AVDPDAVWLL QGWLFQHQPE FWGPAQVAAV LGAVPRGRLL VLDLFAESQP ENSTTRP00000015556/1-744 AVDPDAVWLL QGWLFQHQPE FWGPAQVGAV LGAVPRGRLL VLDLFAESRP bmy_15661T0/1-734 A--------- -GWLFQHQPE FWGPAQVGAV LGAVPRGRLL VLDLFAESQP BACU007145/1-754 AVDPDAIWLL QGWLFQHQPE FWGPAQVGAV LGAVPRGRLL VLDLFAESQP 401 450 ENSP00000225927/1-743 VYTRTASFQG QPFIWCMLHN FGGNHGLFGA LEAVNGGPEA ARLFPNSTMV ENSBTAP00000054422/1-667 VYVRTASFQG QPFIWCMLHN FGGNHGLFGA LESVNQGPTT ARHFPNSTMV ENSTTRP00000015556/1-744 VYVRTASFQG QPFIWCMLHN FGGNHGLFGA LESVNRGPTA ARLFPNSTMV bmy_15661T0/1-734 VYVRTASFQG QPFIWCMLHN FGGNHGFFGA LESVNRGPTA ARLFPNSTMV BACU007145/1-754 VYVRTASFQG QPFIWCMLHN FGGNHGLFGA LESVNRGPTA ARLFPNSTMV 451 500 ENSP00000225927/1-743 GTGMAPEGIS QNEVVYSLMA ELGWRKDPVP DLAAWVTSFA ARRYGVSHPD ENSBTAP00000054422/1-667 GTGMAPEGIG QNEVVYALMA ELGWQKDPVA DLGAWVTSFA ARRYGVSHGD ENSTTRP00000015556/1-744 GTGMTPEGIG QNEVVYALMA ELGWRKGPVA DLGAWVTGFA ARRYGVSHGD bmy_15661T0/1-734 GTGMAPEGIG QNEVVYALMA ELGWRKDPVA DLGAWVTGFA ARRYGVSHGD BACU007145/1-754 GTGMAPEGIG QNEVVYALMA ELGWRKDPVA DLGAWVTGFA ARRYGVSHGA 501 550 ENSP00000225927/1-743 AGAAWRLLLR SVYNCSGEAC RGHNRSPLVR RPSLQMNTSI WYNRSDVFEA ENSBTAP00000054422/1-667 AEAAWRLLLR SVYNCSGEEC RGHNHSPLVR RPSLQMVTTV WYNRSDVFEA ENSTTRP00000015556/1-744 AEAAWRLLLT SVYNCSGEGC SGHNRSPLVR RPSLQMVTDV WYNRSDVLEA bmy_15661T0/1-734 AEAAWRLLLR SVYNCSGEGC SGHNRSPLVR RPSLQMATAV WYNRSDVLEA BACU007145/1-754 AEAAWRLLLR SVYNCSGEGC SGHNRSPLVR RPSLQMATAV WYNRSDVLEA 551 600 ENSP00000225927/1-743 WRLLLTSAPS LATSPAFRYD LLDLTRQAVQ ELVSLYYEEA RSAYLSKELA ENSBTAP00000054422/1-667 WRLLLTATST LASSP----- ---------- ---------- ---------- ENSTTRP00000015556/1-744 WRLLLTATPA LASSPAFCYD LVDVTRQAVQ ELVSLYYEKV RTAYLNKELV bmy_15661T0/1-734 WRLLLAATPT LATSPAFCYD LVDVTRQAVQ ELVSLYYEEA RTAYLNKELV BACU007145/1-754 WRLLLAATPT LATSPAFCHD LVDVTRQAVQ ELVSLYYEEA RTAYLNKELV 601 650 ENSP00000225927/1-743 SLLRAGGVLA YELLPALDEV LASDSRFLLG SWLEQARAAA VSEAEADFYE ENSBTAP00000054422/1-667 ---------- ---------- ---------- ---------A VSETEAHFYE ENSTTRP00000015556/1-744 PLMRAGGVLA YELLPALDKV LASDSHFLLG SWLEQARVAA VSETEARFYE bmy_15661T0/1-734 PLMRAGGVLA YELLPALDKV LASDSHFLLG SWLERARVAA VSETEARFYE BACU007145/1-754 PLMRAGGVLA YELLPALDKV LASDSHFLLG SWLERARVAA VSETEARFYE 651 700 ENSP00000225927/1-743 QNSRYQLTLW GPEGNILDYA NKQLAGLVAN YYTPRWRLFL EALVDSVAQG ENSBTAP00000054422/1-667 QNSRYQLTLW GPEGNILDYA NKQLAGLVAD YYAPRWRLFT ETLVESLVQG ENSTTRP00000015556/1-744 QNSRYQLTLW GPEGNILDYA NKQLAGLVAD YYAPRWRLFT ETLAKSLVQG bmy_15661T0/1-734 QNSRYQLTLW GPEGNILDYA NKQLAGLVAD YYAPRWRLFM ETLVESLVRG BACU007145/1-754 QNSRCQLTLW GPEGNILDYA NKQLAGLVAD YYAPRWRLFM ETLVESLVRG 701 750 ENSP00000225927/1-743 IPFQQHQFDK NVFQLEQAFV LSKQRYPSQP RGDTVDLAKK IFLKYYPRWV ENSBTAP00000054422/1-667 VPFQQHQFDR NAFQLEQTFV LGTRRYPSQP EGDTVDLVKK LFLKYYPRAV ENSTTRP00000015556/1-744 IPFQQHQFDK NAFQLEQTFV LSTKRYPSQP QGDTVDLAKK LFLKYYPRWV bmy_15661T0/1-734 IPFQQHQFDK NAFQLEQTFV LSTRRYPSQP QGDTVDLAKK LFLKYYPRWV BACU007145/1-754 IPFQQHQFDK NAFQLEQTFV LSTRRYPSQP QGDTVDLAKK LFLKYYPRWV 751 800 ENSP00000225927/1-743 AGSW ENSBTAP00000054422/1-667 --SF ENSTTRP00000015556/1-744 AGAL bmy_15661T0/1-734 AGAL BACU007145/1-754 AGAL