KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:10 2014 Check: 00 .. Name: ENSP00000323584/1-1032 Len: 1198 Check: 1235 Weight: 1.00 Name: ENSBTAP00000054438/1-1077 Len: 1198 Check: 750 Weight: 1.00 Name: ENSTTRP00000016319/1-1032 Len: 1198 Check: 5206 Weight: 1.00 Name: bmy_02520T0/1-1186 Len: 1198 Check: 86 Weight: 1.00 Name: BACU004413/1-1104 Len: 1198 Check: 164 Weight: 1.00 // 1 50 ENSP00000323584/1-1032 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054438/1-1077 ---------- ---------- ---------- ---------- --VPSALTVF ENSTTRP00000016319/1-1032 ---------- ---------- ---------- ---------- ---------- bmy_02520T0/1-1186 MDARAGLSHC TACESVTDVW WLFIVHAESL KTRTQTDNGV AGLVTADKVV BACU004413/1-1104 --MQQG---- ---------- -LMTFHSAGT RTCTRAD--- -----AEQVT 51 100 ENSP00000323584/1-1032 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054438/1-1077 PCSLL----- ---------- ---------- ---------- ---------- ENSTTRP00000016319/1-1032 ---------- ---------- ---------- ---------- ---------- bmy_02520T0/1-1186 PIRRQLRGPS ELRRNCRVVD NCRGVPCTVP IHTPIPKDLM FPSLFFYPAH BACU004413/1-1104 SVRFQ----- ALR------- -CRP------ ---------- ---------- 101 150 ENSP00000323584/1-1032 ---------- ---------- ---------- ---------- --------MC ENSBTAP00000054438/1-1077 ---------- ------AYVP EEELKAAVID EGSVEEDGLP GDVQEADFAC ENSTTRP00000016319/1-1032 ---------- ---------- ---------- ---------- --------VC bmy_02520T0/1-1186 LREWAAGFEL GDMCLRPYVP EEELKAAEID EENVEEDGLP LDVQESDFVC BACU004413/1-1104 ---------- -----QTYVP EEELKAAEID EEDVEEDGLP LDVQESDFVC 151 200 ENSP00000323584/1-1032 NEETEIKEAQ SYQNSPVSSA TNQDAGYGSP FSE--SSDQL AHFKGSSSRE ENSBTAP00000054438/1-1077 SEEAEIKEAQ SYQNSPISTA TNQDAGYGSP FSEHSDSDQP AHFKSSSSKE ENSTTRP00000016319/1-1032 NEEAELKEAP SYQNSPISTA TNQDAGYGSP FSE--SSDQP APFKSSSCKE bmy_02520T0/1-1186 NEEAELKEAQ SYQNSPISTA TNQDAGYGSP FSE--NSDPP AHFKSSSSKE BACU004413/1-1104 NEEAELKEAQ SYQNSPISTA TNQDAGYGSP FSE--NSDPP AHFKSSSSKE 201 250 ENSP00000323584/1-1032 EKEDPQCPDS VSYPQDSLAQ IKAVYANLFS ESCWSSLALD LKKSGSTTST ENSBTAP00000054438/1-1077 EKEERQGAEG VSYPQDSLAQ IKAVYANLFS ESCWSSLALD LKKSASTTST ENSTTRP00000016319/1-1032 EKEEAQGREG VSYPQDSLAQ IKAVYANLFS GSCWSSLALD LKKSGSTTGN bmy_02520T0/1-1186 EKEEPQGREG VSYPQDSLAQ IKAVYANLFS ESCWSSLALD LKKSGSTTSN BACU004413/1-1104 EKEEPQGREG VCYPQDSLAQ IKAVYANLFS ESCWSSLALD LKKSGSTTSN 251 300 ENSP00000323584/1-1032 NDASQKESSA PTPTPPTCPV STTGPTTSTP STSCSSSTSH SSTTSTSSSS ENSBTAP00000054438/1-1077 SDAAQKEGST PAPTPPTSTA GATGTTASTP SSGSG----- -----ASGGS ENSTTRP00000016319/1-1032 SDAGQKEGST PAATPPTSTA GATGTTASTP SSGSGSGT-- --GTSASGGS bmy_02520T0/1-1186 SDAGQKEGSP PAPMPPTSTA GATGTTASTP SSGSSSST-- STSTSASGGP BACU004413/1-1104 SDAGQKEGST PAPMPPTSTA GATGTTASTP SSGSSSGT-- STSTSASGGP 301 350 ENSP00000323584/1-1032 GYDWHQAALA KTLQQTSSYG LLPEPSLFST VQLYRQNNKL YGSVFTGASK ENSBTAP00000054438/1-1077 GYDWHQAALA KTLQQTSSYG LLPEPSLFST VQLYRQNNKL YGSVFTGASK ENSTTRP00000016319/1-1032 GYDWHQAALA KTLQQTSSYG LLPEPSLFST VQLYRQNNKL YGSVFTGASK bmy_02520T0/1-1186 GYDWHQAALA KTLQQTSSYG LLPEPSLFST VQLYRQSNKL YGSVFTGASK BACU004413/1-1104 GYDWHQAALA KTLQQTSSYG LLPEPSLFST VQLYRQNNKL YGSVFTGASK 351 400 ENSP00000323584/1-1032 FRCKDCSAAY DTLVELTVHM NETGHYRDDN RDKDSEKTKR WSKPRKRSLM ENSBTAP00000054438/1-1077 FRCKDCSAAY DTLVELTVHM NETGHYRDDN RDKDSEKTKR WSKPRKRSLM ENSTTRP00000016319/1-1032 FRCKDCSAAY DTLVELTVHM NETGHYRDNN RDKDSEKTKR WSKPRKRSLM bmy_02520T0/1-1186 FRCKDCSAAY DTLVELTVHM NETGHYRDDN RDKDAEKTKR WSKPRKRSLM BACU004413/1-1104 FRCKDCSAAY DTLVELTVHM NETGHYRDDN RDKDSEKTKR WSKPRKRSLM 401 450 ENSP00000323584/1-1032 EMEGKEDAQK VLKCMYCGHS FESLQDLSVH MIKTKHYQKV PLKEPVPAIT ENSBTAP00000054438/1-1077 EMEGKEDAQK VLKCMYCGHS FESLQDLSVH MIKTKHYQKV PLKEPVPALT ENSTTRP00000016319/1-1032 EMEGKEDAQK VLKCMYCGHS FESLQDLSVH MIKTKHYQKV PLKEPVPAIT bmy_02520T0/1-1186 EMEGKEDAQK VLKCMYCGHS FESLQDLSVH MIKTKHYQKV PLKEPVPAIT BACU004413/1-1104 EMEGKEDAQK VLKCMYCGHS FESLQDLSVH MIKTKHYQKV PLKEPVPAIT 451 500 ENSP00000323584/1-1032 KLVPSTKKRA LQDLAPPCSP EPAG-MAAEV ALSESAKDQK AANPYVTPNN ENSBTAP00000054438/1-1077 KLVPSTKKRA LHELAAPGSP EPAGAAAAEA ALSEAAKEQK TANPYVTPNN ENSTTRP00000016319/1-1032 KLVPSTKKRA LQDLAAPCSP EPAG-VTAEV APSESAKDQK SANPYVTPNN bmy_02520T0/1-1186 KLVPSTKKRA LQDLASPCSP EPAG-IAAEV ALGESAKDQK SANPYVTPNN BACU004413/1-1104 KLVPSTKKRA LQDLASPCSP EPAG-IAAEV ALGESAKDQK SANPYVTPNN 501 550 ENSP00000323584/1-1032 RYGYQNGASY TWQFEARKAQ ILKCMECGSS HDTLQQLTAH MMVTGHFLKV ENSBTAP00000054438/1-1077 RYGYQNGASY TWQFEARKAQ ILKCMECGSS HDTLQQLTAH MMVTGHFLKV ENSTTRP00000016319/1-1032 RYGYQNGASY TWQFEARKAQ ILKCMECGSS HDTLQQLTAH MMVTGHFLKV bmy_02520T0/1-1186 RYGYQNGASY TWQFEARKAQ ILKCMECGSS HDTLQQLTAH MMVTGHFLKV BACU004413/1-1104 RYGYQNGASY TWQFEARKAQ ILKCMECGSS HDTLQQLTAH MMVTGHFLKV 551 600 ENSP00000323584/1-1032 TTSASKKGKQ LVLDPVVEEK IQSIPLPPTT HTRLPA---- SSIKKQPDSP ENSBTAP00000054438/1-1077 TTSASKKGKQ LVLDPVVEEK IQSIPLPPTT HTRLPAAATT AHVKKQPDSP ENSTTRP00000016319/1-1032 TTSASKKGKQ LVLDPMVEEK IQSIPLPPTT HTRLPA---- AHVKKQPDSP bmy_02520T0/1-1186 TTSASKKGKQ LVLDPMVEEK IQSIPLPPTT HTRLPA---- AHVKKQPDSP BACU004413/1-1104 TTSASKKGKQ LVLDPMVEEK IQSIPLPPTT HTRLPA---- AHVKKQPDSP 601 650 ENSP00000323584/1-1032 AGSTTSEEKK EPEKEK-PP- VAGDAEK-IK EESEDSLEKF EPSTLYPYLR ENSBTAP00000054438/1-1077 AGPTIAEEKK EPEKDKAAL- VAGEVDKKIK EEGEDTGEKF EPTALYQYLR ENSTTRP00000016319/1-1032 SGSATSEEKK EPEKEKALPA VSGDADKQIK EEGEDAADKF EPTTLYQYLR bmy_02520T0/1-1186 SGSAAPEEKK EPEKEKAPPA VAGDADKQIK EEGEDASDKL EPTTLYQYLR BACU004413/1-1104 SGSAAPEEKK EPEKEKAPPA VAGDADKQIK EEGEDASDKF EPTALYQYLR 651 700 ENSP00000323584/1-1032 EEDLDDSPKG GLDILKSLEN TVSTAISKAQ NGAPSWGGYP SIHAAYQLPG ENSBTAP00000054438/1-1077 EEDLDDSAKG GVDILKSLEN TVSTAISKAQ NGAPSWGGYP SIHAAYQLPG ENSTTRP00000016319/1-1032 EEDLDDSPRG GVDILKSLEN TVSTAISKAQ NGAPSWGGYP SIHAAYQLPG bmy_02520T0/1-1186 EEDLDDSPRG GVDILKSLEN TVSTAISKAQ NGAPSWGGYP SIHAAYQLPG BACU004413/1-1104 EEDLDDSPRG GVDILKSLEN TVSTAISKAQ NGTPSWGGYP SIHAAYQLPG 701 750 ENSP00000323584/1-1032 TVKPLPAAVQ SVQVQPSYAG GVKSLSSAEH NALLHSPGSL TPPPHKSNVS ENSBTAP00000054438/1-1077 TVKPPP-AVQ SVQMQPSFAG GVKPLSA-EH GALLHSPGSL TPPPHKSNVS ENSTTRP00000016319/1-1032 TVKPLP-TVQ SVQMQASYAS SVKPLSS-EH GALLHSPGSL TPPPHKSNVS bmy_02520T0/1-1186 AVKPLP-PVQ SVQMQPSYAS SVKALSS-EH SALLHSPGSL TPPPHKSNVS BACU004413/1-1104 TVKPLP-PVQ SVQMQPSYAS GVKSLSS-EH GALLPSPGSL TPPPHKSNVS 751 800 ENSP00000323584/1-1032 AMEELVEKVT GKVNIKKEER PPEKEKSSLA KAASPIAKEN KDFPKTEEV- ENSBTAP00000054438/1-1077 AMEELVEKVT GKVSVKKEER PAEKEKGSPA KATSPAAKEN KDFPRADEL- ENSTTRP00000016319/1-1032 AMEELVEKVT GKVSVKKEER PAEKEKGSPA KAASPTAKEN KDFPRAEDL- bmy_02520T0/1-1186 AMEELVEKVT GKVSVKKEER PAEKDKGSPA KAASPAAKEN KDFPRAEDLG BACU004413/1-1104 AMEELVEKVT GKVSVKKEER PAEKDKGSPA KAVSPAAKEN KDFPRAEDL- 801 850 ENSP00000323584/1-1032 -----SGKP- -QKKGPEAET GKAKKEGPLD VHTPNGTEPL KAKVTNGCNN ENSBTAP00000054438/1-1077 ---GGSSKP- QPKKGPEADG GKAKKEGTGD AHTPNGTEPL KAKVTNGCNN ENSTTRP00000016319/1-1032 ---GGGGRP- QQKKGPEADA GKTKKEGAVD AHTPNGTEPL KAKVTNGCNN bmy_02520T0/1-1186 GGGGGGGKP- QQKKGPEADA GKTKKEGAVD AHTPNGTEPL KAKVTNGCNN BACU004413/1-1104 ---GGGGKPQ QQKKGPEADA GKTKKEGAVD AHTPNGTEPL KAKVTNGCNN 851 900 ENSP00000323584/1-1032 LGIIMDHSPE PSFINPLSAL QSIMNTHLGK VSKPVSPSLD PLAMLYKISN ENSBTAP00000054438/1-1077 LAIITDHSPE PSFINPLSAL QSIMNTHLGK VSRPVSPSLD PLAMLYKIST ENSTTRP00000016319/1-1032 LGIITDHSPE PSFINPLSAL QSIMNTHLGK VSRPVSPSLD PLAMLYKIST bmy_02520T0/1-1186 LGIITDHSPE PSFINPLSAL QSIMNTHLGK VSRPVSPSLD PLAMLYKIST BACU004413/1-1104 LGIITDHSPE PSFINPLSAL QSIMNTHLGK VSRPVSPSLD PLAMLYKIST 901 950 ENSP00000323584/1-1032 SMLDKPVYPA TPVKQADAID RYYYENSDQP IDLTKSKNKP LVSSVADSVA ENSBTAP00000054438/1-1077 SMLDKPAYPA PPAKPPGAAD RYFYENSDQP IDLTKSKSKP LVPGASDGVS ENSTTRP00000016319/1-1032 SMLDKPAFPA PPAKPPGTLD RYCYENSDQP IDLTKSKSKA LAPGAADGVS bmy_02520T0/1-1186 SMLDKPAFPA PPAKPPGAVD RYYYEGSDQP IDLTKSKSKP LVPGAADGVS BACU004413/1-1104 SMLDKPAFPA PPAKPPGTLD RYYYEGSDQP IDLTKSKSKP LAPGAADGVS 951 1000 ENSP00000323584/1-1032 SPLRESALMD ISDMVKNLTG RLTPKSSTPS TVSEKSDADG SSFEEALDEL ENSBTAP00000054438/1-1077 SPLRESALMD ISDMVKNLTG RLTPKSSTPS TVSEKSDADG SSFEEALDEL ENSTTRP00000016319/1-1032 SPLRESALMD ISDMVKNLTG RLTPKSSTPS TVSEKSDADG SSFEEAVDEL bmy_02520T0/1-1186 SPLRESALMD ISDMVKNLTG RLTPKSSTPS TVSEKSDADG SSFEEAVDEL BACU004413/1-1104 SPLRESALMD ISDMVKNLTG RLTPKSSTPS TVSEKSDADG SSFEEAVDEL 1001 1050 ENSP00000323584/1-1032 SPVHKRKGRQ SNWNPQHLLI LQAQFASSLR ETTEGKYIMS DLGPQERVHI ENSBTAP00000054438/1-1077 SPVHKRKGRQ SNWNPQHLLI LQAQFASSLR ETAEGKYIMS DLGPQERVHI ENSTTRP00000016319/1-1032 SPVHKRKGRQ SNWNPQHLLI LQAQFASSLR ETPEGKYIMS DLGPQERVHI bmy_02520T0/1-1186 SPVHKRKGRQ SNWNPQHLLI LQAQFASSLR ETPEGKYIMS DLGPQERVHI BACU004413/1-1104 SPIHKRKGRQ SNWNPQHLLI LQAQFASSLR ETPEGKYIMS DLGPQERVHI 1051 1100 ENSP00000323584/1-1032 SKFTGLSMTT ISHWLANVKY QLRRTGGTKF LKNLDTGHPV FFCNDCASQF ENSBTAP00000054438/1-1077 SKFTGLSMTT ISHWLANVKY QLRRTGGTKF LKNLDTGHPV FFCNDCASQF ENSTTRP00000016319/1-1032 SKFTGLSMTT ISHWLANVKY QLRRTGGTKF LKNLDTGHPV FFCNDCASQF bmy_02520T0/1-1186 SKFTGLSMTT ISHWLANVKY QLRRTGGTKF LKNLDTGHPV FFCNDCASQF BACU004413/1-1104 SKFTGLSMTT ISHWLANVKY QLRRTGGTKF LKNLDTGHPV FFCNDCASQF 1101 1150 ENSP00000323584/1-1032 RTASTYISHL ETHLGFSLKD LSKLPLNQIQ EQQNVSKVLT NKTLGPLGAT ENSBTAP00000054438/1-1077 RTASTYINHL ETHLGFSLKD LSKLPLNQIQ EQQNVSKVLA SKALGPSGAA ENSTTRP00000016319/1-1032 RTASTYISHL ETHLGFSLKD LSKLPLNQIQ EQQNVSKVLA NKALGPVGAA bmy_02520T0/1-1186 RTASTYINHL ETHLGFSLKD LSKLPLNQIQ EQQNVSKVLA NKALGPVGAA BACU004413/1-1104 RTASTYINHL ETHLGFSLKD LSKLPLNQIQ EQQNVSKVLA NKALGPVGAA 1151 1200 ENSP00000323584/1-1032 EEDLGSTFQC KLCNRTFASK HAVKLHLSKT HGKSPEDHLI YVTELEKQ ENSBTAP00000054438/1-1077 EDELGSTFQC KLCNRTFASK HAVKLHLSKT HGKSPEDHLI YVTELEKQ ENSTTRP00000016319/1-1032 EDDLGSTFQC KLCSRTFASK HAVKLHLSKT HGKSPEDHLI YVTELEKQ bmy_02520T0/1-1186 EDDLGSPFQC KLCNRTFASK HAVKLHLSKT HGKSPEDHLI YVTELEKQ BACU004413/1-1104 EDDLGSTFQC KLCNRTFASK HAVKLHLSKT HGKSPEDHLI YVTELEKQ