KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:11 2014 Check: 00 .. Name: ENSP00000343140/1-1843 Len: 1854 Check: 543 Weight: 1.00 Name: ENSBTAP00000054446/1-1820 Len: 1854 Check: 5268 Weight: 1.00 Name: bmy_01657T0/1-1843 Len: 1854 Check: 60 Weight: 1.00 Name: BACU014612/1-1843 Len: 1854 Check: 1970 Weight: 1.00 // 1 50 ENSP00000343140/1-1843 MADTQTQVAP TPTMRMATAE DLPLPPPPAL EDLPLPPPKE SFSKFHQQRQ ENSBTAP00000054446/1-1820 MANAQTQMAP TPTIPMAATE DLPLPPPPAL EDLPPPPPKE SFSKFHQQRQ bmy_01657T0/1-1843 MADAQTQVAP TPSIPVAATE DLPLPPPPAL EDLPLPPPKE SFSKFHQQRQ BACU014612/1-1843 MADAQTQVAP TPSIPVAATE DLPLPPPPAL EDLPLPPPKE SFSKFHQQRQ 51 100 ENSP00000343140/1-1843 ASELRRLYRH IHPELRKNLA EAVAEDLAEV LGSEEPTEGD VQCMRWIFEN ENSBTAP00000054446/1-1820 ASELRRLYKH IHPELRKNLA EAVAEDLAEV LGSEEPTEGD VQCMRWIFEN bmy_01657T0/1-1843 ASELRRLYKH IHPELRKNLA EAVAEDLAEI LGSEEPTEGD VQCMRWIFEN BACU014612/1-1843 ASELRRLYKH IHPELRKNLA EAVAEDLAEI LGSEEPTEGD VQCMRWIFEN 101 150 ENSP00000343140/1-1843 WRLDAIGEHE RPAAKEPVLC GDVQATSRKF EEGSFANSTD QEPTRPQPGG ENSBTAP00000054446/1-1820 WRLDAIGDHE KPPAKESVPG GNVQATSRKF EEGSFANSIN QEPAGPRPSG bmy_01657T0/1-1843 WRLDAIGDHE RPPAKEPVPG GNVQATSRKF EEGSFANSTD QEPAGPRPSG BACU014612/1-1843 WRLDAIGDHE RPPAKEPVPG GNVQATSRKF EEGSFANSTD QEPAGPRPSG 151 200 ENSP00000343140/1-1843 GDVRAARWLF ETKPLDELTG QAKELEATVR EPAASGDVQG TRMLFETRPL ENSBTAP00000054446/1-1820 GDVRAARQLF ETKPLDALTV RAEASEATVR EPAASGDVQG TRMLFETRPL bmy_01657T0/1-1843 GDVRAARWLF ETKPLDELTG HAEAPEATVR EPAASGDVQG TRMLFETRPL BACU014612/1-1843 GDVRAARWLF ETKPLDELTG HAGAPEATVR EPAASGDVQG TRMLFEMRPL 201 250 ENSP00000343140/1-1843 DRLGSRPSLQ EQSPLELRSE IQELKGDVKK TVKLFQTEPL CAIQDAEGAI ENSBTAP00000054446/1-1820 DRLGSRPSTQ EQSPLELRSE IQELKGDVKK TVKLFQTEPL CAIQDSEGAI bmy_01657T0/1-1843 DRLGSRPSIQ EQSPLELRSE IQELKGDVKK TVKLFQTEPL CAIQDAEGAI BACU014612/1-1843 DCLGSRPSIQ EQSPLELRSE IQELKGDVKK TVKLFQTEPL CAIQDAEGAI 251 300 ENSP00000343140/1-1843 HEVKAACREE IQSNAVRSAR WLFETRPLDA INQDPSQVRV IRGISLEEGA ENSBTAP00000054446/1-1820 HEVKAAYREE IQSNAVRSGR WLFETKPLDA INRDPSQVRV IRGISLEEAA bmy_01657T0/1-1843 HEVKAACREE IQSNAVRSAR WLFETQPLDA INRDPSQVRV IRGISLEEAA BACU014612/1-1843 HEVKAACREE IQSNAVKSAR WLFETQPLDA INRDPSQVRV IRGISLEEVA 301 350 ENSP00000343140/1-1843 RPDVSATRWI FETQPLDAIR EILVDEKDFQ PSPDLIPPGP DVQQQQHLFE ENSBTAP00000054446/1-1820 RPDVSATRWI FETQPLDAIR EILVDEQDFQ PSPDLIPPGP DVQQQRRLFE bmy_01657T0/1-1843 RPDVSATRWI FETQPLDAIR EILVDEKDFQ PSPDLIPPGP DVQQQRHLFE BACU014612/1-1843 RTDVSATRWI FETQPLDAIR EILVDEKDFQ PSPDLIPPGP DVQQQRHLFE 351 400 ENSP00000343140/1-1843 TRALDTLKGD EEAGAEAPPK EEVVPGDVRS TLWLFETKPL DAFRDKVQVG ENSBTAP00000054446/1-1820 TRALDTLKGE EEAGAEAPPK EAVVPGDVRS TLWLFETKPL DTLRDNVQVG bmy_01657T0/1-1843 TQALDTLKGE EEAGAEAPPK EEVVPGDVRS TLWLFEMQPL DTLRDKVQVG BACU014612/1-1843 TRALDTLKGE EEAGAEAPPK EEVVPGDVRS TLWLFEMQPS DTLRDKVQVG 401 450 ENSP00000343140/1-1843 HLQRVDPQDG E----GHLSS DSSSALPFSQ SAPQRDELKG DVKTFKNLFE ENSBTAP00000054446/1-1820 HLQRVGPQEG ERFTNEHLSN ADPSAPTLSQ GAPQRDGVKG DVKTFKNLFE bmy_01657T0/1-1843 HLQRVGPQEG ERFMYERLSS DGSSALSLSQ SAPQRDGVKG DVKTFKNLFE BACU014612/1-1843 HLQRVGPQEG ERFMYERLSS DGSSALSLSQ SAPQRDGVKG DVKTFKNLFE 451 500 ENSP00000343140/1-1843 TLPLDSIGQG EVLAHGSPSR EEGTDSAGQA QGIGSPVYAM QDSKGRLHAL ENSBTAP00000054446/1-1820 TLPLDSIGQG EALAPGSICR AEGTDSAGQS QDTGSPVYAM QDGKGHLHAL bmy_01657T0/1-1843 TLPLDSIRQG EAAAHGRISR AEGTDSAGQS QDIGSPVYAM QDGKGHLHAL BACU014612/1-1843 TLPLDSIRQG EASAHGSISR AEGTDSAGQS QDIGSPVYAM QDGKGHLHAL 501 550 ENSP00000343140/1-1843 TSVSREQIVG GDVQGYRWMF ETQPLDQLGR SPSTIDVVRG ITRQEVVAGD ENSBTAP00000054446/1-1820 TSVSREQVVG GDVQGYKWMF ETQPLDRLGR SPSTVDVVRG ITQQEVVAGD bmy_01657T0/1-1843 TSVSREHVVG GDVQGYRWMF ETQPLDQLGQ NPSTVDVVRG ITRQEVVAGD BACU014612/1-1843 TSVSREHVVG GDVQGYRWMF ETQPLDQLGQ NPSTVDVVRG ITRQEVVAGD 551 600 ENSP00000343140/1-1843 VGTARWLFET QPLEMIHQRE QQERQKEEGK SQGDPQPEAP PKGDVQTIRW ENSBTAP00000054446/1-1820 VGTTRWLFET QPLEVIHQRE QQEREEEEGK PQGGPQPEIP HKGDVQTIRW bmy_01657T0/1-1843 VGTARWLFET QPLEVIHQRE QQERREEEGK PQGGPQLEAS PKGDVQTIRW BACU014612/1-1843 VGTARWLFET QPLEVIHQRE QQERREEEGK PQGGPQLEAS PKGDVQTIRW 601 650 ENSP00000343140/1-1843 LFETCPMSEL AEKQGSEVTD PTAKAEAQSC TWMFKPQPVD RPVGSREQHL ENSBTAP00000054446/1-1820 LFETCPMSEL AERQGSEVTD LT--SKARSC TWMFAPQSPD WPEGSKEQHL bmy_01657T0/1-1843 LFETCPMSEL GKKQGSEITD STPKAKARSC TWMFMPQPPD RPESSREQHL BACU014612/1-1843 LFETCPMSEL GEKQGSEITD STPKAKARSC TWMFTPQPPD RPESSREQHL 651 700 ENSP00000343140/1-1843 QVSQVPAGER QTDRHVFETE PLQASGRPCG RRPVRYCSRV EIPSGQVSRQ ENSBTAP00000054446/1-1820 EVSQVQAGER QTERHVFETE PLQAAGHPCG RGPVRYCSRV DIPSGQVSRQ bmy_01657T0/1-1843 EVXQVQAEER QTDRHVFETE PLQASGHPCR RGPVRYCSRV DIPSGQVSRQ BACU014612/1-1843 EVSQVQAGER QTDRHIFETE PLQVSGHPCR RGPVRYCSRV DIPSGQVSRQ 701 750 ENSP00000343140/1-1843 KEVFQALEAG KKEEQEPRVI AGSIPAGSVH KFTWLFENCP MGSLAAESIQ ENSBTAP00000054446/1-1820 KEVFQALEAG KREDQGPREI PEPISAGSVH KFTWLFENCP MGSLAAESIR bmy_01657T0/1-1843 KEVFQALEAG KRENQGSRVI PEPIPAGSVH KFTWLFENCP MGSLAAESIQ BACU014612/1-1843 KEVFQALEAG KRENQGSRVI PEPTPTGSVH KFTWLFENCP MGSLAAESIQ 751 800 ENSP00000343140/1-1843 GGNLLEEQPM SPSGNRMQES QETAAEGTLR TLHATPGILH HGGILMEARG ENSBTAP00000054446/1-1820 GGNLQEEQPV GPSGKGVPER QETAAEGTLR TLHATPGVLH HGGILMEARG bmy_01657T0/1-1843 GGNHQEEQPV GPSGNRVWEG QQTAAEGTLR TLHATPGILH HGGIVMEARG BACU014612/1-1843 GGNHQEEQPV GPSGNRVWER QQTAIEGTLR TLHATPGILH HGGIVMEARG 801 850 ENSP00000343140/1-1843 PGELCLAKYV LSGTGQGHPY IRKEELVSGE LPRIICQVLR RPDVDQQGLL ENSBTAP00000054446/1-1820 PGELCLARYV LPCPGQDSPH VRKEELVSGE LPRIVRQVLR RADVDQQGLL bmy_01657T0/1-1843 PGELCLAKYV LPGPGQGGPH VRKEELVSGE LPRIVRQVLH RPDVDQQGLL BACU014612/1-1843 PGELCLAKYV LPGPEQGGPH VRKEELVSGE LPRIVRQVLH RPDVDQQGLL 851 900 ENSP00000343140/1-1843 VQEDPTGQLQ LKPLRLPTPG SSGNIEDMDP ELQQLLACGL GTSVARTGLV ENSBTAP00000054446/1-1820 VQEDPAGQLH LKPLKLPAPG SSGSIEDMDP EFQQLLACGL GTSAGRTGLV bmy_01657T0/1-1843 VQEDPVGQLR LKPLKLPAPG SSWKVEDMDP EFQQLLACGL GTSVARTGLV BACU014612/1-1843 VQEDPVGQLR LKPLKLPAPG SSWKVEDMDP EFQQLLACGL GTSVARTGLV 901 950 ENSP00000343140/1-1843 MQETEQGLVA LTAYSLQPRL TSKASERSSV QLLASCIDKG DLSGLHSLRW ENSBTAP00000054446/1-1820 MQETERGLVA LTAYSLQPWL ASRAPERSSV QLLAGCINKG DLSGLHNLRW bmy_01657T0/1-1843 MQETEQGLVA LTAYSLQPRL TSRAPERSSV QMLASCIDKG DLSGLHSLRW BACU014612/1-1843 MQETEQGLVA LTAYSLQPRL TSRAPERSSV QMLASCIDKG DLSGLHSLRW 951 1000 ENSP00000343140/1-1843 EPPADPSPVP ASEGAQSLHP TESIIHVPPL DPSMGMGHLR ASGATPCPPQ ENSBTAP00000054446/1-1820 EPPADSSPVP ASKGAQKLPP AESIIHVPPL DPGKGMGHLR GPGATPCAPQ bmy_01657T0/1-1843 EPPADSSPVP ASEGAQRLPL TESIIRVPPL DPSMGMGHLR GPGATPCPPQ BACU014612/1-1843 EPPADSSPVP ASEGAQRLPL TESIIRVPPL DPSMGMGHLR GPGATPCPPQ 1001 1050 ENSP00000343140/1-1843 AIGKAVPLAG EAAAPAQLQN TEKQEDSHSG QKGMAVLGKS EGATTTPPGP ENSBTAP00000054446/1-1820 AAGKAVSLAG E--------- -EKQESRCTG QKGTAALGKS EGAMTMPPGP bmy_01657T0/1-1843 ATGKAVPLAR E--------- -EKQESRCTG QKGMEALGKS DGATTMPLGP BACU014612/1-1843 AVRKAVPLAR E--------- -EKQESRCTG QKGMEALGKS DGATTMPLGP 1051 1100 ENSP00000343140/1-1843 GAPDLLAAMQ SLRMATAEAQ SLHQQVLNKH KQGPTPTATS NPIQDGLR-- ENSBTAP00000054446/1-1820 RFPALQVTMQ SRRTPTAQAQ SLQQQARSKH KPGPTPGAAS LPTQDGLPQA bmy_01657T0/1-1843 KSPNLQAAMQ SLRMATAEAQ SLHQQVLSKH KQGPTPGAAS MPSQDSLLQV BACU014612/1-1843 KSPNLQAAMQ SLRMATAEAQ SLHQQVLSKH KQGPTPGAAS MPSQDSLLQV 1101 1150 ENSP00000343140/1-1843 ---KAGATQS NIRPGGGSDP RIPAAPRKVS REEQALPRGL PGGWVTIQDG ENSBTAP00000054446/1-1820 P--AAGTAQS NSKPLAGGNP RIPAAPSKVS GEQKALPGGL SGGWVTIQDG bmy_01657T0/1-1843 PATATGTAQS NTRPLAGGDP RIPAAPRKVS GEQKALPGGL PRGWVTIQDG BACU014612/1-1843 PATATGTAQS NTRPLAGGDP RIPAAPRKVS GEQKALPGGL PRGWVTIQDG 1151 1200 ENSP00000343140/1-1843 IYTAHPVRTF DPPGGVQLSQ REPQSRHRET ALSVQAPRPL QGGPGQSTGP ENSBTAP00000054446/1-1820 IYTAHPARTF DLPGAVWPSG QG-------- ------PFPL LEGLGQSLGP bmy_01657T0/1-1843 IYTAHPIRTF DLPGGVWPSE RGALPRGRET ALPSQAPSPL LEGPGQSLGP BACU014612/1-1843 IYTAHPIRTF DLPGGVWPSE RGALPRGRET ALPSQAPSPL LEGPGQSLGP 1201 1250 ENSP00000343140/1-1843 GREEPGGCTQ MAWGPPGKAM AEVCPGGLQA AETTLKTAPL GRHILASGPQ ENSBTAP00000054446/1-1820 GQEELGGHTQ KAWEPPEKVM AGLGPGGLQA AETTLKAA-L AHHTRASEPR bmy_01657T0/1-1843 GQEEPGSHTQ KAWGPPEKVM AGLGPGVLQA AETTLKAAPL APHTLASGPQ BACU014612/1-1843 GQEEPGSHTQ KAWGPPEKVM AGLGPGVLQA AETTLKAAPL APHTLASGPQ 1251 1300 ENSP00000343140/1-1843 AAGASPHPHN AFVPPPPTLP AAVTGPDFPA GAHRAEDSIQ QASEPLKDPL ENSBTAP00000054446/1-1820 AAGASLHSRN ASVPPPPPLP ASVTGPDFPA QPRHDENSIR QTSKPTQDPL bmy_01657T0/1-1843 AAGASLHSHN ASVPPPPPLP AAVTGPDFPA QAGHDENSIQ QASEPTQDPL BACU014612/1-1843 AAGASLHSHN ASVPPPPPLP AAVTGPDFPA QAGHDENSIQ QASEPTQDPL 1301 1350 ENSP00000343140/1-1843 LHSHSSPAGQ RTPGGSQTKT PKLDPTMPPK KKPQLPPKPA HLTQSHPPQR ENSBTAP00000054446/1-1820 LHSHNSPAGQ KSPGQPQTKT LKPEPPTHLR KKPQLPPKPA HLSQLPLPRW bmy_01657T0/1-1843 LQSHSSPAGQ RSPGDSQTKT PKLESTTHPR KKPQLPPKPA HLSQIPPPHW BACU014612/1-1843 LQSHSSPAGQ RSPEDSQTKT PKLEPTTHPR KKPQLPPKPA HLSQIPPPHW 1351 1400 ENSP00000343140/1-1843 LPKPLPLSPS FSSEVGQREH QRGERDTAI- -PQPAKVPTT VDQGHIPLAR ENSBTAP00000054446/1-1820 LSKPAALAHS AAEEGGQGKH KQGETATANH DPRPHRVSIA ADQGRVSLPQ bmy_01657T0/1-1843 LPKPSALSPS SSKEVGQGKY RQGETGTTDH DPRPTKVPTT AGQGRVSRAG BACU014612/1-1843 LPKPSALSPS SSKEVGQGKY RQGETGTTDH DPRPTKVPTT AGQGQVSRAG 1401 1450 ENSP00000343140/1-1843 CPSGHSQPSL QHGLSTTAPR PTKNQATGSN AQSSEPPKLN ALNHDPTSPQ ENSBTAP00000054446/1-1820 GPAGQSQPSP QHGPSTVAPS PTKSQAIGSN NHSPDPLRLS ALSSHPISLQ bmy_01657T0/1-1843 CSTGQSQHSP QHDSSTVAPR PTKSQAAGSN DQSPEPLELS ALSSDPTSPQ BACU014612/1-1843 CSTGQSQHSP QHDSSTVVPR PTKSQAAGSN DQSPEPLELS ALSSDPTSPQ 1451 1500 ENSP00000343140/1-1843 WGPGPSGEQP MEGSHQGAPE SPDSLQRNQK ELQGLLNQVQ ALEKEAASSV ENSBTAP00000054446/1-1820 QGPSLTGEKC SDSSQQGAPK SPEILQGGQQ ELQGLLSQVQ ALEKEAESTV bmy_01657T0/1-1843 QGPSPSGEKC TDGSQQGVPE SPKILQGSQQ ELQGLLSQVQ ALEKEAKSAV BACU014612/1-1843 QGPSPSGEKC TDSSQQGVPE SPKILQGSQQ ELQGLLSQVQ ALEKEAKSAV 1501 1550 ENSP00000343140/1-1843 DVQALRRLFE AVPQLGGAAP QAPAAHQKPE ASVEQAFGEL TRVSTEVAQL ENSBTAP00000054446/1-1820 DVQALQRLFE AVPQLPGAPP -APATPHKPE ASVEQAFGEL TRVSTEVARL bmy_01657T0/1-1843 DVRALRRLFE AVPQLRGAPP -APAAPHKPK ASVEQAFGEL TRVSTEVARL BACU014612/1-1843 DVRALRRLFE AVPQLRGAPP -APAAPHKPK ASVEQAFGEL TRVSTEVARL 1551 1600 ENSP00000343140/1-1843 KEQTLARLLD IEEAVHKALS SMSSLQPEAS ARGHFQGPPK DHSAHKISVT ENSBTAP00000054446/1-1820 KEQTLARLLD IEEAVHKALS SMSSLQTGTN TRGHSQGPPK EHSAQEISVT bmy_01657T0/1-1843 KEQTLARLLD IEEAVHKALS SMSSLQPGTN TRGRSQGPLK DHSAHKVSVT BACU014612/1-1843 KEQTLARLLD IEEAVHKALS SMSSLQPGNN TRGRAQGPLK DHSAHNVSVT 1601 1650 ENSP00000343140/1-1843 VSSSARPSGS GQEVGGQTAV KNQAKVECHT EAQSQVKIRN HTEARGHTAS ENSBTAP00000054446/1-1820 DSGRVRPNCS GQEVKSQTLV KSQTEVTSHT EVQSQAKVRN HSEAGSQAAP bmy_01657T0/1-1843 DSSRVRPNCP GQEVRSQTAV KSQTEVTCHT EVQGQAKVRN HTEVRSQAAP BACU014612/1-1843 DSSRFRPNCP GQEVRSQTAV KSQTEVTCHT EVQGQAKVRN HTEVRSQAAP 1651 1700 ENSP00000343140/1-1843 TAPSTRRQET SREYLCPPRV LPSSRDSPSS PTFISIQSAT RKPLETPSFK ENSBTAP00000054446/1-1820 ATPSTRKLEA LREDSHLPQA LPLSRESPSS PTFISMESAT RKLPEEASPR bmy_01657T0/1-1843 TTPSTRRLET LREESSLPRV LPPSRDSPSS PTFISIESAT RKLLEAPSPR BACU014612/1-1843 TTPSTRRLET LREESSLPRV LPPSRDSPSS PTFISIESGT RKLLEAPSPR 1701 1750 ENSP00000343140/1-1843 GNPDVSVKST QLAQDIGQAL LHQKGVQDKT GKKDITQCSV QPEPAPPSAS ENSBTAP00000054446/1-1820 GNPEISVKRA HFTQDECQTQ PHQKDIWHKA GEKEAPQLSG PPPPGPAAAS bmy_01657T0/1-1843 CSPEVSVKST HLPQDVGQAQ PHQKDVWNKA GKKEATQCSG QPQHAPASAS BACU014612/1-1843 CSPEVSVKST HLPQDVGQAQ PHQKDVWNKA GKKEATQCSG QPQHAPASAS 1751 1800 ENSP00000343140/1-1843 PLPRGWQKSV LELQTGPGSS QHYGAMRTVT EQYEEVDQFG NTVLMSSTTV ENSBTAP00000054446/1-1820 ALPTR-QKSA LEPQTAPGGS RHDGATGAGT ---ERVGQCR TTALVSPTTV bmy_01657T0/1-1843 PLPTRQQKSV LELQTGPGGS QHYGATRTVT EQYERVDQCR TSVLTSPTMV BACU014612/1-1843 PLPTRRQKSV LELQTGPGGP QHYGATRTVT AQYERVDQRR TSVLTSPTTV 1801 1850 ENSP00000343140/1-1843 TEQAEPPRNP GSHLGLHASP LLRQFLHSPA GFSSDLTEAE TVQVSCSYSQ ENSBTAP00000054446/1-1820 TEPAEPPRGP GPHLGHHTSP LMRQFLHSQT GLSTGLAEAE MLRVPCGHPT bmy_01657T0/1-1843 TEPAEPPRGP GPHLGLHASP LLRQFLHSPA GLSTGLAEAG KVCVPCGHSQ BACU014612/1-1843 TEPAEPPRGA GPHLGLHDSP LLRQFLHSPA GLSTGLAEAG KVCVPCGHSQ 1851 1900 ENSP00000343140/1-1843 PAAQ ENSBTAP00000054446/1-1820 PTAQ bmy_01657T0/1-1843 PAAQ BACU014612/1-1843 PDAQ