KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:13 2014 Check: 00 .. Name: ENSTTRP00000014382/1-589 Len: 658 Check: 4949 Weight: 1.00 Name: ENSP00000421489/1-642 Len: 658 Check: 5973 Weight: 1.00 Name: ENSBTAP00000054451/1-647 Len: 658 Check: 8208 Weight: 1.00 Name: bmy_07601T0/1-415 Len: 658 Check: 8658 Weight: 1.00 Name: BACU020298/1-562 Len: 658 Check: 7834 Weight: 1.00 // 1 50 ENSTTRP00000014382/1-589 ---------- ---------- ---------- ---------- ---------- ENSP00000421489/1-642 ----MYPAGP PAGPVPRRGR RPLPG----- PPAPAPAPVP AARPPPPAPG ENSBTAP00000054451/1-647 AAAAMYSAGP PAVPAPRRCR RPPPGRPMQP PRPPAPAPVP AARPPPPAPG bmy_07601T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU020298/1-562 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000014382/1-589 --------MA FRKAYSIKDK LQAIERVKGG ERQASVCRDF GVPGGTLRGW ENSP00000421489/1-642 PRPRVAVKMA FRKAYSIKDK LQAIERVKGG ERQASVCRDF GVPGGTLRGW ENSBTAP00000054451/1-647 PRPRVAVKMA FRKAYSIKDK LQAIERVKGG ERQASVCRDF GVPGGTLRGW bmy_07601T0/1-415 ---------- ---------- ---------- ---------M GARG------ BACU020298/1-562 ---------- ---------- ---------- ----SVCRDF GVPGGTLRGW 101 150 ENSTTRP00000014382/1-589 LKDEPKLRWF LEQLGGEVGT QRKKMRLANE EEIDRAVYSW FLALRQHGVP ENSP00000421489/1-642 LKDEPKLRWF LEQLGGEVGT QRKKMRLANE EEIDRAVYAW FLALRQHGVP ENSBTAP00000054451/1-647 LKDEPKLRWF LEQLGGEVGT QRKKMRLANE EEIDRAVYSW FLALRQHGVP bmy_07601T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU020298/1-562 LKDEPKLPCF LEQLGGEVGT QRKKMRLANE EEIDRAVYSW FLALRQHGVP 151 200 ENSTTRP00000014382/1-589 LSGPLIQAQA EAFARQIYGP ECTFKASHGW FWRWQKRHGI SSQRIYGEAE ENSP00000421489/1-642 LSGPLIQAQA EAFARQIYGP ECTFKASHGW FWRWQKRHGI SSQRFYGEAG ENSBTAP00000054451/1-647 LSGPLIQAQA EAFARQIYGP ECTFKASHGW FWRWQKRHGI SSQRIYGEAE bmy_07601T0/1-415 ---------- ---------- ---------- ---------- ---------- BACU020298/1-562 LSGPLIQAQA EAFARQIYGP ECTFKASHGW FWRWQKRHGI SSQRIYGEAE 201 250 ENSTTRP00000014382/1-589 PPAAGPAPGL PVKQEPAQLT RTGPLPDRAL NSPAPAEGGY GDEQIYXXXX ENSP00000421489/1-642 PPAPSPAPGP PVKEEPALPS GAGPLPDRAP APPPPAEGGY GDEQIYSASV ENSBTAP00000054451/1-647 PVAAGPAPGP PVKQEPAQPT RAGPLPDRAA STPAPAEGGY GDEQIYNANV bmy_07601T0/1-415 ---------- ---------- ---------- ------QGGY GDEQIYNANV BACU020298/1-562 PPAAGPAPSP PVKQEPAQLT RAGPLPDRAL NSPAPAEGGY GDEQIYNANV 251 300 ENSTTRP00000014382/1-589 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000421489/1-642 TGLYWKLLPE QAAPPGAGDP GAGGCGRRWR GDRVTVLLAA NLTGSHKLKP ENSBTAP00000054451/1-647 TGLYWKLLPE QAAP-----V GAGGCGRRWR GDRVTVLLAA NLTGSHKLKP bmy_07601T0/1-415 TGLYWKLLPE QAAP-----P GAGGCGRRWR GDRVTVLLAA NLTGSHKLKP BACU020298/1-562 TGLYWKLLPE QAAP-----L GAGGCGRRWR GDRVTVLLAA NLTGSHKLKP 301 350 ENSTTRP00000014382/1-589 XXXXXXXXXX XXXXXXXXXX XXXXXYSPDA LLSRPLLLGW FLDEFVPGVS ENSP00000421489/1-642 LVIGRLPDPP SLRHHNQDKF PASYRYSPDA WLSRPLLRGW FFEEFVPGVK ENSBTAP00000054451/1-647 LVIGQLPDPP SLRHHNQDKF PASYRYSPDA WLSRPLLRGW FFEEFVPGVR bmy_07601T0/1-415 LVIGQLPDPP SLRHHNQDKF PASYRYSPDA WLSRPLLRGW FFEEFVPGVR BACU020298/1-562 LVIGQLPDPP SLRHHNQDKF PASYRYSPDA WLSRPLLRGW FFEEFVPGVR 351 400 ENSTTRP00000014382/1-589 RYLYLSCFQQ KAVLLVAHPS CLSPTARMPT LEESEETPRR CRPEPLGPPE ENSP00000421489/1-642 RYLRRSCLQQ KAVLLVAHPP CPSPAASMPA L-DSEDAPVR CRPEPLGPPE ENSBTAP00000054451/1-647 RYLRRSCLQQ KAVLLVAHPP CPSSEARMPA LEESEETRRR CRPEPTGPPE bmy_07601T0/1-415 RYLRRSCLEQ KAVLLVAHPP CPSPAARVPA LGESEETPRR CRPEPLGPPE BACU020298/1-562 RYLRRSCLQQ KAVLLVAHPP CPSPAARMPT LEESEETPRR CRPEPLGPPE 401 450 ENSTTRP00000014382/1-589 ELQTPDGAVR VLFLSKGSSR AHIPAPLEQG VVAAFKQLYK RELLRLAVSC ENSP00000421489/1-642 ELQTPDGAVR VLFLSKGSSR AHIPAPLEQG VVAAFKQLYK RELLRLAVSC ENSBTAP00000054451/1-647 ELQTPDGAVR VLFLCRGSGR AHIPAPLEQG VVAAFKQLYK RELLRLAVSC bmy_07601T0/1-415 GLQTPDGAVR VLFLSKGSSR AHIPAPLGQG VVAAFKQLYK RELLRLAVSC BACU020298/1-562 ELQTPDGAVR VLFLSKGSSR AHIPAPLEQG VVAAFKQLYK RELLRLAVSC 451 500 ENSTTRP00000014382/1-589 AGGSPLDFMR SFMLKDMLYL AGLSWDLVQA GSIERCWLLG LRAAFEPRPA ENSP00000421489/1-642 ASGSPLDFMR SFMLKDMLYL AGLSWDLVQA GSIERCWLLG LRAAFEPRPG ENSBTAP00000054451/1-647 AGGSPLDFMR SFMLKDMLYL AGLSWDLVQA GSIERCWLLG LRAAFEPRPV bmy_07601T0/1-415 AAGSPLDFMR SFMLKDMLYL AGLSWDLVQA GSIERCWLLG LRAASEPRPA BACU020298/1-562 AGGSPLDFMR SFMLKDMLYL AGLSWDLVQA GSIERCWLLG LRAAFEPRPA 501 550 ENSTTRP00000014382/1-589 EECAGQPAGQ AEEAAERSRV LSDLTHLAAL AYKRLAPEEV AEWLHLDDDG ENSP00000421489/1-642 EDSAGQPA-Q AEEAAEHSRV LSDLTHLAAL AYKCLAPEEV AEWLHLDDDG ENSBTAP00000054451/1-647 EERAGQPAGQ AEEAAEHSRV LSDLTHLAAL AYKRLAPEEV AEWLHLDDDG bmy_07601T0/1-415 EECAAQPAGR AEEAAERSRV LSDLTHLAAL AYKRLAPEEV AEWLHLDDDG BACU020298/1-562 EECAGQPAGQ AEEAAERSRV LSDLTHLAAL AYKRLAPEEV AEWLHLDDDG 551 600 ENSTTRP00000014382/1-589 GLPDGCREDP GPA----LVP GAPPPPASLP SVAAGG-EEE EEA------A ENSP00000421489/1-642 GPPEGCREEV GPA----LPP AAPPAPASLP SAMGGG-EDE EEATDYGGTS ENSBTAP00000054451/1-647 GLPDGGREDW GPSRPPVLVP GGPLLPASLP SAVAGGAEEE EEE------A bmy_07601T0/1-415 GLPDGCREDP GPSRPPVLVP GAPPPPASLP SVAAGG-EEE EEA------A BACU020298/1-562 GLPDGCREDP GPSRPPVLVP GAPPPPASLP SVAAGG-EEE EEA------A 601 650 ENSTTRP00000014382/1-589 VPSAGEAVRG LETALRWLES RDPREVGPLK LVQLRSLISM ARRLGGIGPS ENSP00000421489/1-642 VPTAGEAVRG LETALRWLEN QDPREVGPLR LVQLRSLISM ARRLGGIGHT ENSBTAP00000054451/1-647 IPTAGEAVRG LETALRWLET QDPREVGPLK LVQLRSLIST ARRLGGIGPS bmy_07601T0/1-415 VPSAGEAVRG LETALRWLES RDPREVGPLK LVQLRSLISM ARRLGGIGPS BACU020298/1-562 VPSAGEAVRG LETALRWLES QDPREVGPLK LVQLRSLISM ARRLGGIGPS 651 700 ENSTTRP00000014382/1-589 PAVPDDGV ENSP00000421489/1-642 PAGPYDGV ENSBTAP00000054451/1-647 PMVPDDGL bmy_07601T0/1-415 PAVPDDGV BACU020298/1-562 PAVPDDGV