KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:13 2014 Check: 00 .. Name: ENSP00000270115/1-542 Len: 574 Check: 6156 Weight: 1.00 Name: ENSBTAP00000054460/1-540 Len: 574 Check: 4970 Weight: 1.00 Name: ENSTTRP00000010546/1-547 Len: 574 Check: 2103 Weight: 1.00 Name: bmy_04975T0/1-391 Len: 574 Check: 140 Weight: 1.00 Name: BACU019790/1-537 Len: 574 Check: 1356 Weight: 1.00 // 1 50 ENSP00000270115/1-542 MDLGWDRSRG PRRSTSSVRV RELSWQGLHN PCPQSKGPGS QRDRLGEQLV ENSBTAP00000054460/1-540 MDQARDGAHG SRPSTASIQV RELSSQGLHN PQPQSKAPGR SGHGHSEQLA ENSTTRP00000010546/1-547 MDQAWDRAHG PRPSIASVRV RALSWQGRHK PRPQSKAPGS RGGSHSGRLP bmy_04975T0/1-391 MDQAWDRAHG PWPSRASVRV RELSWQSRHN PRPQSKAPGS RGGSRSERLV BACU019790/1-537 MDQAWDRAHG PWPSRASVRV RELSWQSRHN TRPQGKAPGS RGGSRSERLV 51 100 ENSP00000270115/1-542 EEYLSPARLQ ALARVDDLRL VRTLEMCVDT REGSLGNFGV HLPNLDQLKL ENSBTAP00000054460/1-540 EECLLPARLQ ALAQVDDLRL VSMLEMCVNT RESSLGSLGL HLPNLSQLKL ENSTTRP00000010546/1-547 EEHLSPARLQ ALAQVDDLRL VSVLELCVNT HENSLGNFGL HLPNLSQLKL bmy_04975T0/1-391 EEHLSPARLQ ALAQVDDLRL VSVLELCVNT HENSLGNFGL HLPNLSQLKL BACU019790/1-537 EEHLSPARLQ ALAQVDDLRL VSVLELCVNT HENSLGNFGL HLPNLSQLKL 101 150 ENSP00000270115/1-542 NGSHLGSLRD LGTSLGHLQV LWLARCGLAD LDGIASLPAL KELYASYNNI ENSBTAP00000054460/1-540 NGSCLGSLRD LGTSLSHLQV LSQTRCSLTD LESISSFPAL KELYLSYNNI ENSTTRP00000010546/1-547 NGSCLGSLRD LGTSLGRLQV LWLARCGLAD LDGIGSFPAL KELYLSYNDV bmy_04975T0/1-391 NGSCLGSLRD LGTSLGRLQV LWLARCGLAD LDGIGSFPAL KELYLSYNDV BACU019790/1-537 NGSCLGSLRD LGTSLGRLQV LWLARCGLAD LDGIGSFPAL KELYLSYNDV 151 200 ENSP00000270115/1-542 SDLSPLCLLE QLEVLDLEGN SVEDLGQVRY LQLCPRLAML TLEGNLVCLQ ENSBTAP00000054460/1-540 WDLSPLCLLE QLEVLDLEGN CVEDLGQLRY LQLCPQLATL TLEGNPLCLR ENSTTRP00000010546/1-547 SDLSPLCLLE QLEVLDLEGN CVQDPGQLRY LQLCPRLATL TLEGNPLCLW bmy_04975T0/1-391 SDLSPLCLLE QLEVLDLESN CVEDPGQLCY LQLCPRLASL TLEGNPLCLR BACU019790/1-537 SDLSPLCLLE QLEVLDLESN CVEDPGQLCY LQLCPRLASL TLEGNPLCLR 201 250 ENSP00000270115/1-542 PAPGPTN--- ---------- ---------- --KVPRGYNY RAEVRKLIPQ ENSBTAP00000054460/1-540 PGSGPTH--- ---------- ---------- --QVPQGYNY RAEVRKLIPQ ENSTTRP00000010546/1-547 PGPGPAH--- ---------- ---------- --QVPQGYNY RAEVRKLVPQ bmy_04975T0/1-391 PGPGPAHQVW GQRLQGDAGL TGPPDAGLPP PPQVPQGYNY RAEVRKLIPQ BACU019790/1-537 P--GPAH--- ---------- ---------- --QVPQGYNY RAEVRKLIPQ 251 300 ENSP00000270115/1-542 LQVLDEVPAA HTGPPAPPRL SQDWLAVKEA IKKGNG---- LPPLDCPRGA ENSBTAP00000054460/1-540 LQVLDELPAA HTGLPASQKL DQDWLLVKEA IKEGCT---- LDSLHQTHGS ENSTTRP00000010546/1-547 LQVLDELPAT HTRLTTSRKL DHDRLVVKEA IKEGSVLDSL LPRLGSPHGS bmy_04975T0/1-391 LQVLDELPAT HTRLPTSRKL DHDWLMVKEA IKEGSVLDSL LPGL------ BACU019790/1-537 LQVLDELPAT HTRLPTSRKL DHDWLMVKEA IKEGSVLHSL LPGLGRPHGS 301 350 ENSP00000270115/1-542 PIRRLDPELS LPETQSRASR PWPFSLLVRG GPLPEGLLSE DLAPEDNTSS ENSBTAP00000054460/1-540 PMWRLSPELC LPETQPWAPR RGPLSLLVPG MPLPEGLLPK GPAPEDGTSN ENSTTRP00000010546/1-547 PVWRRSPELC SPETQRRAPR PWPRSLLVPG VPLPAGLLPQ GPAPEDDASS bmy_04975T0/1-391 ---------- ---------- ---------- ---------- ---------- BACU019790/1-537 PVWRLSPELC SPETQCRAPR PWPRSLLVPG GLLPEGLLPQ GPAPEDDASS 351 400 ENSP00000270115/1-542 LTHGAGQVLC GNPTKGLRER RHQCQAREPP EQLPQHRPGD PAASTSTPEP ENSBTAP00000054460/1-540 LTHGAGRVLC GNPTKGLRER RHGCQAGVHP EKLPSPRLEE LAPRASASEP ENSTTRP00000010546/1-547 LTHGAGRVLC GNPAKGLQER RHQCQAGAHS ERLPPPGPED LAARASAPGP bmy_04975T0/1-391 ---------- ---------- ---------- ---------- ---------- BACU019790/1-537 LTHGAGRVLC GNPTKGLHER RHQCQAGAHP QRLPPPGPED LATRASAPGQ 401 450 ENSP00000270115/1-542 DPADSSDFLA LAGLRAWREH GVRPLPYRHP ESQQEGAVAP WGPRRVPEEQ ENSBTAP00000054460/1-540 DPADDHDLLA WAGLQALREL RLRPLPSRCP ESWEEGAAGP WGPQRGPEEQ ENSTTRP00000010546/1-547 DPADSRHLLA SASLPALREL RLRPLPSRCL ESREEAAAAP GGPQRGPEEE bmy_04975T0/1-391 ---------- ---------- ---------- ---------- ---------- BACU019790/1-537 SHSFGIGSKG GAGLQRLPSP HPSPLPSRCL ESREEGAATP GSPQRGPEEE 451 500 ENSP00000270115/1-542 VHQAEPKTPS SPPSLASEPS GTSSQHLVPS PPKHPRPRDS GSSSPRW-ST ENSBTAP00000054460/1-540 EDEAGPKPHR SPPSLAPESS RTSGYNLIPC PPKSFKP-DR GRNS--WGST ENSTTRP00000010546/1-547 QDEAGPTTRP RPPSLAPEPS RTLGYNLTPS PPKSLMPYDR GSSS--WGST bmy_04975T0/1-391 ---------- -------EPS RTLGYNLTPS PPKSLMPSDR GSSS--WGST BACU019790/1-537 QDKAGPKTRP SPPSLAPEPS RTLGYNLTPS PPKSLMPSDR GSSS--WGST 501 550 ENSP00000270115/1-542 DLQSRGRRLR VLGSWGPGLG DGVAAVPVLR ALEVASRLSP RAQGCPGPKP ENSBTAP00000054460/1-540 DLQFRGRRLR TLGSLGPGLG QGLAPVTALR AREVTSGPSP QAEGCPGPKP ENSTTRP00000010546/1-547 DLQFRGRHLR ALGSLGPGLG QGLAAVTALR ALEVASGPSP RAEGCPGPKS bmy_04975T0/1-391 DLQFRGRRLR ALGSLGPGLG QGLAAVTALR ALEVASGPSP RAEGCPGPKP BACU019790/1-537 DLQFRGRRLR ALGSLGPGLG QGLAAVTALR ALEVASGPSP RAEGCPGPKP 551 600 ENSP00000270115/1-542 APDAAARPPR AAELSH--PS PVPT ENSBTAP00000054460/1-540 APDSAARPPA SGDTDH--PS PTPP ENSTTRP00000010546/1-547 APDPAARPPA SSASEPHRPS PAPP bmy_04975T0/1-391 APDPAARPPA SGACRT---- ---- BACU019790/1-537 APDPAARPPA SGACRT---- ----