KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:14 2014 Check: 00 .. Name: ENSP00000370718/1-621 Len: 655 Check: 8163 Weight: 1.00 Name: ENSBTAP00000054478/1-541 Len: 655 Check: 5949 Weight: 1.00 Name: bmy_17977T0/1-560 Len: 655 Check: 1707 Weight: 1.00 Name: ENSTTRP00000014595/1-588 Len: 655 Check: 6265 Weight: 1.00 // 1 50 ENSP00000370718/1-621 MV-----LCP VIGKLLHKRV VLASASPRRQ EILSNA---- ---------- ENSBTAP00000054478/1-541 ---------- ---------- ---------- ---------- ---------- bmy_17977T0/1-560 MVGERSRGCR VKGAI---RT SSGTAGWYRA EGGSQCGPGG PGGAGDRDGG ENSTTRP00000014595/1-588 MV-----LCP VIGKLQHKRV VLASASPRRQ EILSNA---- ---------- 51 100 ENSP00000370718/1-621 ---------- -GLRFEVVPS KFKEKLDKAS FATPYGYAME TAKQKALEVA ENSBTAP00000054478/1-541 ---------- ---------- RFLQK----- ---------- ---------- bmy_17977T0/1-560 ESWGERWDAG KGLRFEVVPS RFKEKLHKAS FATPYAYAVE TAKQKALE-- ENSTTRP00000014595/1-588 ---------- -GLRFEVVPS RFKEKLHKAS FATPYAYAVE TAKQKALEVA 101 150 ENSP00000370718/1-621 NRLYQKDLRA PDVVIGADTI VTVGGLILEK PVDKQDAYRM LSRLSGREHS ENSBTAP00000054478/1-541 ------DLRA PDVVIGADTI VAVGGLILEK PVDKQDAYRM LSRLSGKEHS bmy_17977T0/1-560 ---------- ---------- -AVGATILEK PVDKQDAYRM LSRRPAGHR- ENSTTRP00000014595/1-588 GRMHQKDLRA PDVVIGADTI VAVGAMILEK PVDKQDAYRM LSRLNGKEHS 151 200 ENSP00000370718/1-621 VFTGVAIVHC SSKDHQLDTR VSEFYEETKV KFSELSEELL WEYVHSGEPM ENSBTAP00000054478/1-541 VFTGVAIVHC YTKDGQLDTE VSEFYEETTV KFSELSEEML WEYIDSGEPM bmy_17977T0/1-560 ---GLGVLR- -GDHGEV--- ---------- -LRAVRGAAV GVHQQRGAHA ENSTTRP00000014595/1-588 VFTGVAIVHC CSKDGRLDTE VSEFYEETTV KFSELSEELL WEYINSGEPM 201 250 ENSP00000370718/1-621 DKAGGYGIQA LGGMLVESVH GDFLNVVGFP LNHFCKQLVK LYYPPRPEDL ENSBTAP00000054478/1-541 DKAGGYGIQA LGGMLVEYVR GDFLNVVGFP LNRFCKELAH LYHGPRAHGA bmy_17977T0/1-560 ---GGYGIQA LGGMLVENVH GDFLNVVGFP LNHFCKELAR LYYPPRPEDL ENSTTRP00000014595/1-588 DKAGGYGIQA LGGMLVEYVH GDFLNVVGFP LNHFCKXXXX XXXXXXXXXX 251 300 ENSP00000370718/1-621 RRSVKHDSIP AADTFEDLSD VEGGGSEPTQ RDAGSRDEKA EAGEAGQATA ENSBTAP00000054478/1-541 PRQVRHDSIP AVDTFEDLSD AEGGGSDPAR AKEGL----E PCGVQPQAPR bmy_17977T0/1-560 QR-VKHDSIP AVDTFENLSD TEGGGSDPDP SAEGGRGGEE ADGDRSQAPG ENSTTRP00000014595/1-588 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXTDS----- ---------- 301 350 ENSP00000370718/1-621 --EAECHRTR ETLPPFPTRL LELIEGFMLS KGLLTACKLK VFDLLKDEAP ENSBTAP00000054478/1-541 PREADLNGVT DSQPPLPVGL LELMDGFKAS KALLTACKLQ VFDVLKERGP bmy_17977T0/1-560 ALDAALNGA- DSRPPFPTGL LELMDGFKAS KVLFTACKLK LFDVLKDQGP ENSTTRP00000014595/1-588 ---------- ---APFPTGL LELMDGFKAS KXXXXXXXXX XXXXXXXXXX 351 400 ENSP00000370718/1-621 QKAADIASKV DASACGMERL LDICAAMGLL EKTEQGYSNT ETANVYLASD ENSBTAP00000054478/1-541 LAAADVAREI DASVGGTARL LDVCAALGLL DKSDRGYSNT EMASLHLASD bmy_17977T0/1-560 LKAVDVARKL DACAGGTEQL LDVCAALGLL EKTHRGYSNT EVATLHLVSD ENSTTRP00000014595/1-588 XXXXXXXXXX XXXXXXTEQL LDVCAALGLL EKTRRGYSNT EVATLHLVSD 401 450 ENSP00000370718/1-621 GEYSLHGFIM HNNDLTWNLF TYLEFAIREG TNQHHRALGK K-AEDLFQDA ENSBTAP00000054478/1-541 GEQSLHGLAA YHDGPVWGAF THLGRAVREG AAWT------ ---PEPLPQA bmy_17977T0/1-560 GEHSLLGLAE YNDAHVWGVF TRLRLAVREG AGHTRGALGV TEEEEHLPCF ENSTTRP00000014595/1-588 GEHSLQGVAE YNDAHVWGVF TRLGLAVREG AEQTRGALGA M-EEERLSQG 451 500 ENSP00000370718/1-621 YYQ-SPETRL RFMRAMHGMT KLTACQVATA FNLSRFSSAC DVGGCTGALA ENSBTAP00000054478/1-541 PHKWSTEATL QFMRASHGLS KLTAQHVATA FDLSPFTSAC HLGGCTGALA bmy_17977T0/1-560 HHQ-STEMTL QFMRAMHSLS KLTAHHVATA FDLSRFTSAC DLGGCTGILA ENSTTRP00000014595/1-588 YHQ-SRELTL QFMRAKHSLS KLTAHHVATA FDLSRFASAC DLGGCTGILA 501 550 ENSP00000370718/1-621 RELAREYPRM QVTVFDLPDI IELAAHFQPP GPQAVQIHFA AGDFFRDPLP ENSBTAP00000054478/1-541 HKLVQEYPHL QVTIFALPEV IKLAGDFETN ARPSERVHFV PGDLSSDSLP bmy_17977T0/1-560 HELAQEYPHL QVTVFDLPEV IELSGGFQRG GRQTERIHFV PGDFFKDSLP ENSTTRP00000014595/1-588 RELAQEYPRL QVTVFDLPEV TELSGGFQRG GRQTERIRFV PGDFFKDSLP 551 600 ENSP00000370718/1-621 SAELYVLCRI LHDWPDDKVH KLLSRVAESC KPGAGLLLVE TLLDEEKRVA ENSBTAP00000054478/1-541 PADLYIVCSL LHDWPDDRLH GLLSRVSGCC KPGAGLLLAE LAPAEEEDAS bmy_17977T0/1-560 EADLYILSRI LQDWPDDRLH KLLSRISSSC KPDS------ ---------- ENSTTRP00000014595/1-588 EADLYVLSRM LQDWPDDKLH KLLSRISSSC KPGGGLLVAE AAAEEE---- 601 650 ENSP00000370718/1-621 QRALMQSLNM LVQTEGKERS LGEYQCLLEL HGFHQVQVVH LGGVLDAILA ENSBTAP00000054478/1-541 GAARRPPGLR ALGVGRPPRN PGQYQRLLQR LGFQDVQAAC AAGLLHVVLG bmy_17977T0/1-560 ----FQFKKR VHFIEEAPRP PARHPVL--- ---------- ---------- ENSTTRP00000014595/1-588 GASQSP---R LRTLSPQPRS PDEHRRLLQR HGFQDVRVAR AGDLLCVVLG 651 700 ENSP00000370718/1-621 TKVAP ENSBTAP00000054478/1-541 TRAPP bmy_17977T0/1-560 SLPAP ENSTTRP00000014595/1-588 TRAAP