KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:16 2014 Check: 00 .. Name: ENSP00000331556/1-651 Len: 698 Check: 165 Weight: 1.00 Name: ENSBTAP00000054504/1-666 Len: 698 Check: 8425 Weight: 1.00 Name: bmy_08423T0/1-562 Len: 698 Check: 6368 Weight: 1.00 Name: ENSTTRP00000006118/1-570 Len: 698 Check: 2644 Weight: 1.00 // 1 50 ENSP00000331556/1-651 ---------- -------MSL PRLLKVNIRT YDNSIPISES SRKSWNQKHF ENSBTAP00000054504/1-666 SIPLWCLGEL INEDIHTWNS LCRQEITIKT YDNSIPISES SKKIRNQQYL bmy_08423T0/1-562 ---------- -----MAWEV IEVRGELKDT LSQGI----- KQKIMESTIL ENSTTRP00000006118/1-570 ---------- -------PFH SNRREVNIRT YDNSLPIRES SRKLWNQQYF 51 100 ENSP00000331556/1-651 ALTFPKPLQR GTNDKSRPLK SQITVTRHDK RKLEEGQKPA HKWIRHSFRK ENSBTAP00000054504/1-666 TITFPKSSQP GGNKRLRPSE IQVTVPRHDK RNLDELQKPA HIWIRHSLRK bmy_08423T0/1-562 HFNISQTTQA GSKKRLRPSE TQIAVLRHDK RNLDEAQKPA HMDNTFFKKK ENSTTRP00000006118/1-570 T-TFPKQPQP GSKKRLRPSE TQTAVLXXXX XXXXXXXXXX XXXXXXXXXX 101 150 ENSP00000331556/1-651 ILQWPPIYTA AREQTPFRHL YTSKTHLKKA EYKKSKDEKG GTPLKKDSKK ENSBTAP00000054504/1-666 KFQSPSINLI VRRQASFRHP YTHITHSKKA ESKKYKDDKK ETALKKISKK bmy_08423T0/1-562 M---PSINLT IQRQASFKHS YALITHSKKA ESKKSKDDKK GTNLKKVSKK ENSTTRP00000006118/1-570 XXXXXXXXXX XXXXXXXXXX XXXXXXXKKA EFKKSKDDKK ELNLKKVAKK 151 200 ENSP00000331556/1-651 KGGSYATNPE SKQIV-EEKT KRQNEADKTP LKSSHENEQS KKSKSSSETN ENSBTAP00000054504/1-666 DTGPHEV--- ------DEKP KRRNKADKTP SKSSHGSQLS KKSKSKSETN bmy_08423T0/1-562 DTGPHETTLE SKKTVNNEKP KRRNKADKTP SKSSHESQLY KKSKSKSETN ENSTTRP00000006118/1-570 AIGPHTT-LE SKKTVNNEKP KRGNKAVKTP SKSSHESQLS KKSKSNSEAN 201 250 ENSP00000331556/1-651 PESQNSKTVS KN--CSQKDK KDSKNSKKTN TEFLHTKNNP KKDLKRSKTS ENSBTAP00000054504/1-666 PESKDSISVS IK--HQKKEK RYSKDSKEMD FESTST---- KKYSKSSKNN bmy_08423T0/1-562 PESKDSKSVS KDQKKKKKDK RDSKDSREMD FESICT---- KKYYKSSKNN ENSTTRP00000006118/1-570 PESKGSKSVS IK----KKDK RYSKDSREMD FESICT---- KKYYR-SKNN 251 300 ENSP00000331556/1-651 NDPISEICSE NSLNVDFLML VGQSDDESIN FDAWLRNYSQ NNSKNYSLKY ENSBTAP00000054504/1-666 SDAVSETCSK NSSNVGLMVH LGESDAESME FDMWLKNYSQ NNSK------ bmy_08423T0/1-562 CDAKSEICSK SSSNMDLMMY LEESGAEPME FDMWLNNYSQ NNSK------ ENSTTRP00000006118/1-570 RDAKSEVCSK SSSNMDLMMY LEESGAEPME FDMWLNNYSQ NNFK------ 301 350 ENSP00000331556/1-651 TKYTKKDTKK NAK-KSSDAE SEDSKDAKKD SKKVKKNVKK DDKKKDVKKD ENSBTAP00000054504/1-666 -KPTKKDAKK DAKGKGSDAE SVDSKDAKKD KKGATKDTKK GAKKDTESTD bmy_08423T0/1-562 -KPPKKDAKK DTKGKGSDAE SEDSKDAKKD EKK------- ---------- ENSTTRP00000006118/1-570 -KLPKKDAKK DTKGKGSDAE SEDSKDAKKD EKK------- ---------- 351 400 ENSP00000331556/1-651 TES------- ---------- ---------T DAESGDSKDE RKDTKKDKKK ENSBTAP00000054504/1-666 AESGDSKDAK KGKKESKKDK KKDAKKDAAS DAESGDSKDA KKDSKKGKKD bmy_08423T0/1-562 ---------- ---------- ---------- -----DKKSA TKDSKKG--- ENSTTRP00000006118/1-570 ---------- ---------- ---------- -----DKKSA MKDSKKG--- 401 450 ENSP00000331556/1-651 LKKDDKKKDT KKYPESTDTE SGDAKDARND SRNLKKASKN DDKKKDAKKI ENSBTAP00000054504/1-666 SKKDNKKKDA KKDAESTDAE SGDSKDAKKD SKKGKKDSKK DDKKKDAKKD bmy_08423T0/1-562 ---------A KKDTESTDAE SGDSKDAKKD SKKGKKDSKK DD-KKDGQKD ENSTTRP00000006118/1-570 ---------A KKDTESTDAE SGNSKDA--- ----KKDSKK DD-KKDGQKD 451 500 ENSP00000331556/1-651 TFSTDSESEL ESKESQKDEK KDKKDSKTDN KKSVKNDEES TDADSEPKGD ENSBTAP00000054504/1-666 AESTDAES-G DSKNAKKDSK KGKKD---DK KKDAKKDAVS TDADSESEGD bmy_08423T0/1-562 AE----ES-V DSKDAKKDS- --KKD---DK EKDAKKDVVS TDADSESEGD ENSTTRP00000006118/1-570 AE----ES-V DSKDAKKNS- --KKD---DK EKDAKKDVVS TDADSESEGD 501 550 ENSP00000331556/1-651 SKKGKKDEKK GKKDSKKDDK KKDAKKNAES TEMESDLELK KDKKHSKEKK ENSBTAP00000054504/1-666 AKKSKKDSKK DKKDLKKDDQ KKPAMKSKES TETESDWES- -----KKVKR bmy_08423T0/1-562 TKM------- ---DSKKDDK KKSAMKSEES TETKSDWES- -----KKDKK ENSTTRP00000006118/1-570 TKMG------ ---KSKKDDK RKSAMKSEES TETKSDWESK TDKR-KKVKK 551 600 ENSP00000331556/1-651 GSKKDIKKDA RKDTESTDAE FDESSKTGFK TSTKIKGSDT ESEESLYKPG ENSBTAP00000054504/1-666 DSKKDTKKTA KKATESSGAE SDVSSKRYLK KTEMFKSSDA ESEESLFKPG bmy_08423T0/1-562 DSKKVKQDSK RCQQEGC--- -KEGPRKNLK KPETFKSSDA ESEESLYKLR ENSTTRP00000006118/1-570 DSKDAKNKDA KKDLESSDAE SDVSSEKNLK KPETLKSSDA ESEESLYKLR 601 650 ENSP00000331556/1-651 AKKKIDESDG TSANSKMEGL ESKRGFRMSS KKTTFNEKGE KASTGRVPPS ENSBTAP00000054504/1-666 SKKRVDESDA TSTDSKKDAV EPKRGIKMPS RRTTFKEKGK KIGTGRVPPS bmy_08423T0/1-562 PKKRVDESDA TSTDSKKEAL EPRRNFKMPS KRTTFKEKGK KLGTGRVPPS ENSTTRP00000006118/1-570 PKRIVDESDV TSTDSKKEAL EPKRNFKMPS KRTTFKEKGK KVGTGRVPPS 651 700 ENSP00000331556/1-651 REKPPLPACE PSLPSPKVRR LCWCKMPPPP PKPRYAPLPE APWIHKLL ENSBTAP00000054504/1-666 RERPPLPPCE PILPSPRVKR LCRCQMPPPP PKPRYAPLPE AKWIHKLL bmy_08423T0/1-562 RERPPLLPCE PLLPSPRAKR LCGCQMPPPP PKPRYDPL-- ----RKLD ENSTTRP00000006118/1-570 RERPPLLPCE TLLPSPKAKR LCGCQNPPPP PKPRYAPLSE AKWIHKLL