KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:22 2014 Check: 00 .. Name: ENSP00000398617/1-922 Len: 938 Check: 8059 Weight: 1.00 Name: ENSBTAP00000054526/1-554 Len: 938 Check: 6845 Weight: 1.00 Name: bmy_16783T0/1-564 Len: 938 Check: 8593 Weight: 1.00 Name: BACU009045/1-774 Len: 938 Check: 7665 Weight: 1.00 // 1 50 ENSP00000398617/1-922 MIWLRNRRCL EPLQGTPKWV PVLGELQKTL QKGEYLPLRP LPMFESNFVQ ENSBTAP00000054526/1-554 ---------- ---------- ---------- ---------- ---------- bmy_16783T0/1-564 ---------- ---------- ---------- ---------- ---------- BACU009045/1-774 MNRLWNVRRL EPLQGPLKWV PTLGELQKTL QKGEYLPLRP LPMFESNFVQ 51 100 ENSP00000398617/1-922 VTHQGGPVFV NHRTNRLAMG VAASLPGLVL PDILLIGQPA EDRDCSGLVL ENSBTAP00000054526/1-554 ---------- ---------- ---------- ---------- ---------- bmy_16783T0/1-564 ---------- ---------- ---------- ---------- ---------- BACU009045/1-774 VTSRGAPVYV HHRANRVTMG VAASLPGLVL PDILLMAQPP EGRQCSSLVL 101 150 ENSP00000398617/1-922 TRMIPLDLVH LCVHDLSAWR LKLRLVSGRQ YYLALDAPDN EVGFLFHCWV ENSBTAP00000054526/1-554 --MIPLDLAH LYVHDLSAWR LKLRLVTGRY YYLELDAPDS EVGFLFDRWM bmy_16783T0/1-564 ---------- ---------- ---------- ---------- ---------- BACU009045/1-774 TRMIPLDLAH LYVHDLSAWR LKLRLVTGRY YYLELDAPDS EVSFLFDRWI 151 200 ENSP00000398617/1-922 RLINLLQEPA PTWTPRTTRT APLDMPLAEA PASTWHLQDQ PISRHAVRVA ENSBTAP00000054526/1-554 RLISQLQQPA TSWAPRTLHT PPTGLSHLGP PASTWRLQVP SHRRHSVTTA bmy_16783T0/1-564 ---------- ---------- ---------- ---------- ---------- BACU009045/1-774 RLINLLQQPA TSRAPRTLHT PPMDLGHVAP PASTWRRQ-- ---------- 201 250 ENSP00000398617/1-922 ERNFPHKTVA AQRQR----K AKALKRSFKS QAVGDSVPLI WSQLEHADVR ENSBTAP00000054526/1-554 EPTFPYKILT AQRQKAKHTH RQTLKRKFKS QAVGDSLPLV WSQLQHVDAR bmy_16783T0/1-564 ---------- ---------- ---------- ---------- ---------- BACU009045/1-774 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000398617/1-922 KKPAEKKSHS DPRPDRTHTQ IRLPEKTSIT TWTIFSIISS TANQTQSSPK ENSBTAP00000054526/1-554 KKSTEKKPQS DLPSGRLKTE IQVSEKPSIT IRTIFSIISN TPDHMESSPK bmy_16783T0/1-564 ---------- ---------- ---------- ---------- ---------- BACU009045/1-774 ---------- ---------- ---------- ---------- ---GCSDSEG 301 350 ENSP00000398617/1-922 ACTSASDEAT GQGHVVESPS HCVSADSPDG FFLGSCSSLD PCLWHQDTED ENSBTAP00000054526/1-554 AVVYPG---- ----LLETPL HCISEDSPEM PLLGTCDDLD MCAWQQHVDN bmy_16783T0/1-564 ---------- ---------- ---------M PLLGSCDHLD MYPWQQDMDD BACU009045/1-774 ATCLAG---- ----LLQTPS LCISEDSPEM PLLGSCDHLD MYPWQQDMDD 351 400 ENSP00000398617/1-922 LMDSGGSTLS SAASGLAPYP PAACLSTPYS SIPRGREKAG PMGSHQGPGP ENSBTAP00000054526/1-554 LMDPETSTMS SCSIHPAAYT P--------- NFPSFNKKAR PL-------- bmy_16783T0/1-564 LMDPEASTLS TSSLCPAAYP P--------- DFRRCNEQAR PLDSVQRLWP BACU009045/1-774 LMDPEASTLS TSSLCPAAYP P--------- DFRRCNEQAR PLDSVQRLWP 401 450 ENSP00000398617/1-922 PPCQKAPSGL VTSCKAPFLV DQSQKLPAVP ASSWKPP--- ---------P ENSBTAP00000054526/1-554 PPNWKPLAVP TAPHKAPFIL DQSKRVSAMP AALQMSTA-- ---------P bmy_16783T0/1-564 PPSQKPPAIP AASCKAPFIL DQSQKFLAVP APSRKAPAFP AAPQEAPATP BACU009045/1-774 PPSQKPPAIP AASCKAPFIL DQPQKFLAVP APSRKAPAFP AAPQEAPATP 451 500 ENSP00000398617/1-922 GLAPPQKAPA ASAPPRKAPA VPAPSQKAPA VPAPSQKAPA IPAPSRKASA ENSBTAP00000054526/1-554 G--PSQKATA YPPVPQKAP- ----FQKPPH VPTVPQKAPA MPGPSQKPRH bmy_16783T0/1-564 G--PSRKTPH VLAIPHKVPA MPAKSRKVPH VPAVPHKVPA MPAPSQKATH BACU009045/1-774 G--PSWKIPH VLAIPHKTPA VPSKSRKVPH VPAVPHKVPA MPAPSQKATH 501 550 ENSP00000398617/1-922 ASASPRKASA VPAPPQKTPP PSQKAPSVPT IPQKAVSPTA PKKKSLLLPA ENSBTAP00000054526/1-554 APAIPQKPPV MAV------- PSQRAPGTLG VSPKAVSHPA PNRKSVFLPA bmy_16783T0/1-564 VLATPHKAPA VPA------- PSQKAPHALA VPPKAVSPSA PNRKSVFLPT BACU009045/1-774 VLATPHKAPA MPA------- PSQKAPHALA VPPKAVSPSA PNRKSVFLPT 551 600 ENSP00000398617/1-922 PSQKALPTSP TEYQMALSPP ASRGKLPGDF DVLPTGIPGR AVLERSQSGG ENSBTAP00000054526/1-554 PSQKGL-TSP TQHRMTLGPD SV-------- SVVPSRSHRG DVLEKRKPEE bmy_16783T0/1-564 LSQKAL-TLP TQYQMTLDPA TT-------- GVLPAGSHGG DVLEQSKPEG BACU009045/1-774 LSQKAL-TLP TQYQMTLDPA TT-------- GVLPAGSHGG DVLEQSKPEG 601 650 ENSP00000398617/1-922 KPEPVVTVRT QETDVVEMTT QAKSPESPFT VTKKESKDIL ISQTKEVTLE ENSBTAP00000054526/1-554 KPEPVKLMGT KEKNVVETRT QKTTVEVPFT TTEKKSEEVL IRRAQEIAVD bmy_16783T0/1-564 KPEPVVLMGT QETNTVEMRT QKTSLELPFT ATEKESEEVL VSRAQDITVD BACU009045/1-774 KPEPVVLMGT QETNTVEMRT QKTPLELPFT TTEKESEEVL VSRAQDITVD 651 700 ENSP00000398617/1-922 AFRGQGKLED WAHWAKLEER SPDLPGVRSK ELEQRKRWVK AKELAVEGPS ENSBTAP00000054526/1-554 GLKGKGKLED RVHMMK-EEI DLDMPGFKSK EVGQQKKWVK TKKLAIQQAP bmy_16783T0/1-564 GLKGKGKLED KVRRMK-EEI SLDMPGFKSK EVGQQKKWVK TQELAIEEAS BACU009045/1-774 GLKGKGKLED KVRRMK-EEI SLDMPGFRSK EVGQQKKWVK TQELAIEEAS 701 750 ENSP00000398617/1-922 QEHSRPFSVE ALTLTKLMIT ANSKEQPSKS ALVSLPSWLL ATPQASATSM ENSBTAP00000054526/1-554 QEQTRPFSVE GLTLAK---- ---------- ---------- ---------- bmy_16783T0/1-564 QGQTRPFSVE GLTLDKLMII ASSKDPSLRS ALVNLPSW-L STQQGSAMPT BACU009045/1-774 QGQTRPFSVE GLTLDKL-II ASSKDPSLRS ALVNLPSW-L STQQGSAMPT 751 800 ENSP00000398617/1-922 MASVPSRPGQ LSLLEGKPVV VREQPESHTW VKEGKRPWGE MKEQPWGEMK ENSBTAP00000054526/1-554 ---------- ---------- ---------- ---------- ---------- bmy_16783T0/1-564 MDTVPLSTTK VSLLEETLVV VREQPQLGAW VKG------- -NTHPWAEVE BACU009045/1-774 MDTVPLRTTK VSLLEETPVV VREQSQLGAW AKG------- -NTHPWAEVE 801 850 ENSP00000398617/1-922 EPPWDPKGPP KVPFRSKPTS ASLKREGISQ APIPLTASPW EDLRPSPLSE ENSBTAP00000054526/1-554 ---------- ---------- ---------- ---------- ---------- bmy_16783T0/1-564 EVPWDPKGPS KASPCPKRAT SSPKMNVASL TPIPLPSTRW EDVTESPASL BACU009045/1-774 EVPRDPKGPS KASPCPKRAT SSPKMNVASL TPIPLPSMRW EDVTESPASL 851 900 ENSP00000398617/1-922 TLISKMEATA RASQQPKRVS QEPMRMPAQH PLATVGSSSE ILLPMLLELE ENSBTAP00000054526/1-554 ---------- ---------- ---------- ---------- ---------- bmy_16783T0/1-564 TPVSKME--A RVSQQPRRVS QEPKRVPDQC PMATVGSSLE ILLPSLLEIE BACU009045/1-774 TPVSKME--A RVSQQPRRVS QEPKRVPDQC PMATVGSSLE ILLPTLLEIE 901 950 ENSP00000398617/1-922 TVRNTATKAE EIQEESGVLN LLPSLQHSQH SEWPDAGA ENSBTAP00000054526/1-554 ---------- ---------- ---------- -------- bmy_16783T0/1-564 SMKDTASKVE KIKEEVGVFA TSPSMHRSQR PE------ BACU009045/1-774 SMKDTASKVK KIKEEVGVFA TSPRYLG--- --------