KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:22 2014 Check: 00 .. Name: BACU001937/1-105 Len: 571 Check: 4646 Weight: 1.00 Name: ENSP00000287078/1-566 Len: 571 Check: 9256 Weight: 1.00 Name: ENSBTAP00000054539/1-569 Len: 571 Check: 9093 Weight: 1.00 Name: bmy_04428T0/1-568 Len: 571 Check: 9803 Weight: 1.00 Name: ENSTTRP00000006280/1-565 Len: 571 Check: 3668 Weight: 1.00 // 1 50 BACU001937/1-105 ---------- MVAPVGDLSS PPAPGT---- SWVTSSLVLS Q--------- ENSP00000287078/1-566 MRRQWGSAMR AAEQAGCMVS ASRAGQPEAG PWSCSGVILS RSPGLVLCHG ENSBTAP00000054539/1-569 MGRQWGPAMR AAEQAGCVVS ASRAGQPEAG SWSCSGVILN RRPGLVLCHG bmy_04428T0/1-568 MGRQWGPAMR AAEQAGCVVS ATRAGQPEAG SWSCSGVILS RRLGLVLCHG ENSTTRP00000006280/1-565 MGRQWGPAMR AAEQAGCVVS ATRAGQPEAG SWSCSGVILS RRLGLVLCHG 51 100 BACU001937/1-105 ---------- ---------- ---------- ---------- -PSP------ ENSP00000287078/1-566 GIFVPFLRAG SEVLTAAGAV FLPGDSCRDD LRLHVQWAPT AAGPGGGAER ENSBTAP00000054539/1-569 GIFTPFLRAG SGALTAASTA FLPGDSCGDD LRLHVQCGPT AASPAGRAER bmy_04428T0/1-568 GIFTPFLRAG SGALTAAGAA FLPGDSCGDD LRLHVQWGPT AASPAGRAER ENSTTRP00000006280/1-565 GIFTPFLRAG SGALTAAGAV FLPGDSCGDD LRLHVQWGPT AASPAGRAER 101 150 BACU001937/1-105 ---------C QSL------- ---------- ---------- ---------- ENSP00000287078/1-566 GRPGLCTPQC ASLEPGPPAP SRGRPLQPRL PAELLLLLSC PAFWAHFARL ENSBTAP00000054539/1-569 GRPGLCTPQC AGLEPGPPAR PRGRPLQPPR PAELLLLLSC PAFRGHFVRL bmy_04428T0/1-568 GRPGLCTPQC AGLEPGPPAR FRGRLLQPPR PAELLLLLSC PAFRGHFARL ENSTTRP00000006280/1-565 GRPGLCTPQC AGLEPGPPAR FRGRPLQP-- PSELLLLXXX XXXXXXXXXX 151 200 BACU001937/1-105 ---------- ---------- ---------- ---------- ---------- ENSP00000287078/1-566 FGDEAAEQWR FSSAARDDEV SEDEEADQLR ALGWFALLGV RLGQEE--VE ENSBTAP00000054539/1-569 FGGEEAEQWR FANAAPDDEV SEEEEEDQLR ALGWFALLRV RPEMEK--EA bmy_04428T0/1-568 FGGETAKQWS FASAAPDDEV SEEEEEDQLR ALGWFALLRV RPDPEKEAEA ENSTTRP00000006280/1-565 XXXXXXXXXX XXXXXXXXXV SEEEEEDQL- ALDWFALMRE RPDLEKEAEA 201 250 BACU001937/1-105 ---------- --------SP IL-------- ---------- --GVL----- ENSP00000287078/1-566 EERGPAMAVS PLGAVPKGAP LLVCGSPFGA FCPDIFLNTL SCGVLSNVAG ENSBTAP00000054539/1-569 EERGPVLAVA PLGDVPKGAP LLACGSPFGA FCPDIFLNTL SRGVLSNSAG bmy_04428T0/1-568 EERGPVLAVA PLGAVPKGEP LLACGSPFGA FCPDIFLNTL SCGVLSNSAG ENSTTRP00000006280/1-565 EERGPVLAVA PFGAVPKGEP LVACGSPFGA FCPDIFLNTI SCGVLSNSAG 251 300 BACU001937/1-105 ---------- ---------- ---------- ---------- ---GFQ---- ENSP00000287078/1-566 PLLLTDARCL PGTEGGGVFT ARPAGALVAL VVAPLCWKAG EWVGFTLLCA ENSBTAP00000054539/1-569 PLLLTDARCL PGTEGGGVFA SRPAGALVAL VAAPLCWKAR EWVGLTLLCA bmy_04428T0/1-568 PLLLTDARCL PGTEGGGVFE TRPAGALVAL VAAPLCWKAR EWVGLTLLCA ENSTTRP00000006280/1-565 PLLLTDARCL PGTEGGGVFE ARPAGALVAL VAAPLCWKAR EWVGLTLLCA 301 350 BACU001937/1-105 ---------- ---------- ---------- --PWEPP--- ---------- ENSP00000287078/1-566 AAPLFRAARD ALHRLPHSTA ALAALLPPEV GVPWGLPL-- RDSGPLWAAA ENSBTAP00000054539/1-569 AAPLLSVARA ALCRLHPDTA ALAALLPPEM GAPWGLPLRY RDPGPPWAAA bmy_04428T0/1-568 AAPLLCAARA ALCRLHPGAA ALAAFLPHEM GAPWGLPL-- RDPGPPWAAA ENSTTRP00000006280/1-565 AAPLLCAARA ALCRLHPGAA ALAAFLPHEM GSPWGLPL-- RDPGPPWAAA 351 400 BACU001937/1-105 -------SVW KDG------- ---------- ---------- ---------- ENSP00000287078/1-566 AVLVECGTVW GSGVAVAPRL VVTCRHVSPR EAARVLVRST TPKSVAIWGR ENSBTAP00000054539/1-569 AVLVECGSVW GSGVAVAPHL VVTCRHVAPR ETARVLVHST TPKSAIIWGR bmy_04428T0/1-568 AVLVECGSVW GSGVAVAPRL VVTCRHVAPR EAAKVLVRST TPKSAVIWGH ENSTTRP00000006280/1-565 AVLVECGSVW GSGVAVAPRL VVTCRHVAPR EAAKVLVRST TPKSAVIWGH 401 450 BACU001937/1-105 ---------- ---------- ---------- ---------- ---------- ENSP00000287078/1-566 VVFATQETCP YDIAVVSLEE DLDDVPIPVP AEHFHEGEAV SV-VGFGVFG ENSBTAP00000054539/1-569 VVFATQETSP YDIAVVRLEE DLDGVPVPVP AEHFHEGNEQ RVPLVRGLPA bmy_04428T0/1-568 VVFATQETSP YDIAVVSLEE DLDGVPVPVP AEHFHEGEAV SV-VGFGVFG ENSTTRP00000006280/1-565 VVFATQETSP YDIAVVSLEE DLDGVPVPVP AEHFHEGEAV SV-VGFGVFG 451 500 BACU001937/1-105 ---------- ---------- ---------- ---------- ---------- ENSP00000287078/1-566 QSCGPSVTSG ILSAVVQVNG TPVMLQTTCA VHSGSSGGPL FSNHSGNLLG ENSBTAP00000054539/1-569 VLSMPTVLGG RWNSQRKIKE VPDVLVCGCD LLGFIFTNRL FSPRSSDSLC bmy_04428T0/1-568 QACGPSVTSG ILSAVVQVDD TPVMLQTTCA VHGGSSGGPL FSTCSGDLLG ENSTTRP00000006280/1-565 QACGPSVTSG ILSAVVQVDD TPVMLQTTCA VHGGSSGGPL FSTCSGDLLG 501 550 BACU001937/1-105 IVASNTRDNN TGATYPHLNF SIPITVLQPG ---------- -------RTA ENSP00000287078/1-566 IITSNTRDNN TGATYPHLNF SIPITVLQPA LQQYSQTQDL GGLRELDRAA ENSBTAP00000054539/1-569 IVASNTRDNN TGATYPHLNF SIPITVLQPA LQQYSQTGDL GGFRQLDRAS bmy_04428T0/1-568 IVASNTRDNN TGATYPHLNF SIPITVLQPA LQRYSQAGDL GGLRQLDRAP ENSTTRP00000006280/1-565 IIASNTRDNN TGATYPHLNF SIPITVLQPA LQRYSQAGDL GGLRQLDRAP 551 600 BACU001937/1-105 RPAT--WAAS ASWTAPPSR- - ENSP00000287078/1-566 EPVRVVWRLQ RPLAEAPRSK L ENSBTAP00000054539/1-569 EPVRVVWRLQ RPPAEALRSK L bmy_04428T0/1-568 EPVRVVWRLQ RPLAEAPRSK L ENSTTRP00000006280/1-565 EPVRVVWRLQ RPLAEAPRSK L