KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:25 2014 Check: 00 .. Name: ENSTTRP00000011731/1-1139 Len: 1170 Check: 8130 Weight: 1.00 Name: ENSP00000441691/1-1153 Len: 1170 Check: 5196 Weight: 1.00 Name: ENSBTAP00000054571/1-1152 Len: 1170 Check: 4704 Weight: 1.00 Name: bmy_00718T0/1-1011 Len: 1170 Check: 6998 Weight: 1.00 Name: BACU011961/1-1122 Len: 1170 Check: 865 Weight: 1.00 // 1 50 ENSTTRP00000011731/1-1139 ---------- LALCHGFNLD TEKAVIFQNN ARGFGQSVVQ LEGSXXXXXX ENSP00000441691/1-1153 MALRVLLLTA LTLCHGFNLD TENAMTFQEN ARGFGQSVVQ LQGSRVVVGA ENSBTAP00000054571/1-1152 MNHRILLLTA LALCHGFNLD TEKAVIFQNN ARGFGQSVVQ IQGSRLVVGA bmy_00718T0/1-1011 ---------- --------MQ SSSKTMQGAS GRAW------ -----LVVGA BACU011961/1-1122 ---------- LALCHGFNLD TENAVIFQNN ARGFGQSVVQ LEGSRLVVGA 51 100 ENSTTRP00000011731/1-1139 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000441691/1-1153 PQEIVAANQR GSLYQCDYST GSCEPIRLQV PVEAVNMSLG LSLAATTSPP ENSBTAP00000054571/1-1152 PQEVKAANQT GGLYHCDYST GRCEAIPLQV PPEAVNMSLG LSLAFAANPF bmy_00718T0/1-1011 PQEIKAANQT GGLYQCDYSM GKCEPIPLQV PPEAVNMSLG LTLAFATNPF BACU011961/1-1122 PQEIKAANQT GGLYQCDCSM GKCEPIPLQV PPEAVNMSLG LTLAFATNPF 101 150 ENSTTRP00000011731/1-1139 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCPQKESD ENSP00000441691/1-1153 QLLACGPTVH QTCSENTYVK GLCFLFGSNL RQQPQKFPEA LRGCPQEDSD ENSBTAP00000054571/1-1152 RLLACGPTVH QICKENTYAN GLCFSFGSNL LQQPRRIPRA LRGCPEQDSD bmy_00718T0/1-1011 RLLACGPTGQ QICKENTYAN GFCFLFVSNL QHQPRRLPEA LRGCPQQDSD BACU011961/1-1122 QLLACGPTGQ QICKENTYVN GFCFLFGSDL QQQLRRLPEA LRGCPQQDSD 151 200 ENSTTRP00000011731/1-1139 IAFLIDGSGS INPTDFQRMK NFVSTVMSQF ---------- ------QKSK ENSP00000441691/1-1153 IAFLIDGSGS IIPHDFRRMK EFVSTVMEQL ---------- ------KKSK ENSBTAP00000054571/1-1152 IAFLIDGSGS IDPVDFERMK RFVSTVMSQF ---------- ------QKSK bmy_00718T0/1-1011 IAFLIDGSGS INPTDFQRMK NFVSTIYGEL AGRWLRGRRD TFSSVIPGAR BACU011961/1-1122 IAFLIDGSGS INPTDFQRMK NFVSTVMSQF ---------- ------QKSK 201 250 ENSTTRP00000011731/1-1139 TLFSLMQYSE EFQTHFTFND FKRNPSPASL VRPITQLLGR THTATGIRKV ENSP00000441691/1-1153 TLFSLMQYSE EFRIHFTFKE FQNNPNPRSL VKPITQLLGR THTATGIRKV ENSBTAP00000054571/1-1152 TLFSLMQYSD DFQTHFTFND FKRNPVPEFL VGPIRQLFGR THTATGIRKV bmy_00718T0/1-1011 SQFSLMQYSE EFQTHFTFND FKRNPSPELL VKPIIQL--- ---------- BACU011961/1-1122 TL-----YSE EFQTHFTFND FKRNPSPELL VKPIIQLLGR THTATGIHKV 251 300 ENSTTRP00000011731/1-1139 VRELFHSRNG ARENALKILV VITDGEKFGD PLDYKDVIPE ADRKGVIRYV ENSP00000441691/1-1153 VRELFNITNG ARKNAFKILV VITDGEKFGD PLGYEDVIPE ADREGVIRYV ENSBTAP00000054571/1-1152 VRELFHSSSG ARNHAIKIMI VITDGEKYLD PLEYSDVIPE ADRKKIIRYV bmy_00718T0/1-1011 -RELFHSRNG ARENALKILV VITDGEKYGD PLDYKDVIPE ADRKGVIRYV BACU011961/1-1122 VRELFHSRNG ARENALKILV VITDGEKYGD PLDYKDVIPE ADRKGVIRYV 301 350 ENSTTRP00000011731/1-1139 IGVGD-FSSD KSLKELDTIA SKPRGDHVFQ VNNFEALKTI QNQLQEKIFA ENSP00000441691/1-1153 IGVGDAFRSE KSRQELNTIA SKPPRDHVFQ VNNFEALKTI QNQLREKIFA ENSBTAP00000054571/1-1152 IGVGDAFRSR KSRQELDTIA SKPPADHVFQ VNNFEALKTI QNQLQEKIFA bmy_00718T0/1-1011 IGVGDAFFSD KSVKELDTIA SKPPGDHVFQ VNNFEALKTI QNQLQEKIFA BACU011961/1-1122 IGVGDAFFSD KSVKELVTIA SKPPGDHVFQ VNNFEALKTI QNQLQEKIFA 351 400 ENSTTRP00000011731/1-1139 IEGTHTGSTS SFEYEMSQEG ISAVFTSXXX XXXXXXXXXX XXXXXXXXXX ENSP00000441691/1-1153 IEGTQTGSSS SFEHEMSQEG FSAAITSNGP LLSTVGSYDW AGGVFLYTSK ENSBTAP00000054571/1-1152 IEGTQTGSTS SFEHEMSQEG FSAAFTSDGP LLGAVGSFDW AGGAFLHTSN bmy_00718T0/1-1011 IEGTHTGSTS SFEYEMSQEG F--------- ---------- ---------- BACU011961/1-1122 IEGTQTGSTS SFEYEMSQEG FSAVFTSDGP LLGAVGSFDW AGGAFLHTSK 401 450 ENSTTRP00000011731/1-1139 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000441691/1-1153 EKSTFINMTR VDSDMNDAYL GYAAAIILRN RVQSLVLGAP RYQHIGLVAM ENSBTAP00000054571/1-1152 DKITFINTTR IDSDMNDAYL GYAAEVTLRN RVQHLFLGAP RYQHIGLVVI bmy_00718T0/1-1011 NKVTFINTTR VDSDMNDAYL GYAAEVILQN RVQSLLLGAP RYQHIGLVVL BACU011961/1-1122 DKVTFINTTR VDSDMNDAYL GYAAEVILRN RVQSLLLGAP RYQHIGLVVI 451 500 ENSTTRP00000011731/1-1139 XXXXXXXXXX XXXXXXXXIG SYFGASLSSV DVDRDGSSDL VLIGAPHYYE ENSP00000441691/1-1153 FRQNTGMWES NANVKGTQIG AYFGASLCSV DVDSNGSTDL VLIGAPHYYE ENSBTAP00000054571/1-1152 FRQNAGVWQK NAEIKGSQIG SYFGASLCSV DVNRDGSSDL VLIGAPHFYE bmy_00718T0/1-1011 FKKNAGAWEK NADIKGSQIG SYFGASLSSV DVDRDGSSDL VLIGAPHYYE BACU011961/1-1122 FKKNAGAWEK NAEIKGTQIG SYFGASLSSV DVNRDGSSDL VLIGAPHYYE 501 550 ENSTTRP00000011731/1-1139 QSRGGQVSVC PFPRG-RAKW QCGAVLRGEQ GHLWARFGAA LTVLGDVNGD ENSP00000441691/1-1153 QTRGGQVSVC PLPRGQRARW QCDAVLYGEQ GQPWGRFGAA LTVLGDVNGD ENSBTAP00000054571/1-1152 QMRGGQVSMC PFPRG-RAKW QCDAVLRGEP GHPWGRFGAA LTALGDVNGD bmy_00718T0/1-1011 QSRGGQ---- ------RAKW QCGAVLRGEQ GHLWARFGAA LTVLGDVNGD BACU011961/1-1122 QSRGGQVSVC PFPRG-RAKW QCGTVLRGEQ GHLWARFGAA LTVLGDVNGD 551 600 ENSTTRP00000011731/1-1139 RLSDVAIGAP GEQENQGAVY LFHGTSGLGI SPAHSQRITG SQFSPRLQYF ENSP00000441691/1-1153 KLTDVAIGAP GEEDNRGAVY LFHGTSGSGI SPSHSQRIAG SKLSPRLQYF ENSBTAP00000054571/1-1152 RLVDVAIGAP GEQENQGAVY LFHGTSKLGI SPSHSQRITG SQISPKLQYF bmy_00718T0/1-1011 RLTDVAIGAP GEQENRGAVY LFHGTSGLGI SPAHSQRITG SQFSPRLQYF BACU011961/1-1122 RLTDVAIGAP GEQENRGAVY LFHGTSGLGI SPAHSQRITG SQFSPRLQYF 601 650 ENSTTRP00000011731/1-1139 GQSLSGGQDL TGDGLVDLAV GAQGHVLLLR SQPVLKVEVT MDFTPREVAR ENSP00000441691/1-1153 GQSLSGGQDL TMDGLVDLTV GAQGHVLLLR SQPVLRVKAI MEFNPREVAR ENSBTAP00000054571/1-1152 GQSLSGGQDL TMDGLVDLAV GAQGHVLLLR SQPVLKVEAT MEFTPKEVKR bmy_00718T0/1-1011 GQSLSGGQDL TADGLVDLA- ---------- --PVLKVEAT MEFTPREVAR BACU011961/1-1122 GQSLSGGQDL TVDGLVDLAV GAQGHVLLLR SQPVLKVEAT MEFTPREVAR 651 700 ENSTTRP00000011731/1-1139 DVYECRERVV KGKIAGEVRV CLRVRKNTRD RLKEGDTQST ITYDLALDPG ENSP00000441691/1-1153 NVFECNDQVV KGKEAGEVRV CLHVQKSTRD RLREGQIQSV VTYDLALDSG ENSBTAP00000054571/1-1152 NVYECRDPVV KGQIAGQVKV CLQVRKSTWD RLGEGDTQST ITYDLALDPG bmy_00718T0/1-1011 DVYECRERVV KGRLAGEVRV CLRVRKNTWD RLRE------ ---------- BACU011961/1-1122 DVYECRERVV KDQIAGEVRV CLRVRKNTRD RLGE------ ---------G 701 750 ENSTTRP00000011731/1-1139 RPHSQAIFDE TKNNTLRHIV TLGLSQQCET LKLRLLDCVE DSVTPIALCL ENSP00000441691/1-1153 RPHSRAVFNE TKNSTRRQTQ VLGLTQTCET LKLQLPNCIE DPVSPIVLRL ENSBTAP00000054571/1-1152 RPHSVAIFDE TQNSTRRRVE TLRLSQKCET LKLRLLDCVE DSVTPIALRL bmy_00718T0/1-1011 ---------- ---------V TLDLSQKCET LKLRLLDCVE DSVTPIALRL BACU011961/1-1122 RPHSQAIFEE TKNNTLRHIV TLGLSQKCET LKLRLLDCVE DSLTPIALRL 751 800 ENSTTRP00000011731/1-1139 NFSLVGKPSS HFGNLRPVLD VEAPTLFTAS FPFEKNCGND SICQDDLSIT ENSP00000441691/1-1153 NFSLVGTPLS AFGNLRPVLA EDAQRLFTAL FPFEKNCGND NICQDDLSIT ENSBTAP00000054571/1-1152 NFSLVGEPAH NYGGLRPVLA VDALRLFTAS LPFEKNCGND TVCQDDLSIT bmy_00718T0/1-1011 NFSLVGKPSS SFGNLRPVLA VDAPTLFTAS FPFEKNCGND SICQDDLSIT BACU011961/1-1122 NFSLVGKPLS SFGNLRPVLA VDAPTLFTAL FPFEKNCGND SICQDDLSIT 801 850 ENSTTRP00000011731/1-1139 FSFMSLDTLV VGGSRDLIVT LTVRNQGEDS YRTQVTFFYP SGLSYRRVSG ENSP00000441691/1-1153 FSFMSLDCLV VGGPREFNVT VTVRNDGEDS YRTQVTFFFP LDLSYRKVST ENSBTAP00000054571/1-1152 FSFMDLDTLV VGGPRDLNVT VTVRNEGEDS YRTQVTFFYP SGLSYRRVSS bmy_00718T0/1-1011 FSFMSLDTLV VGGSRDLNVT LTVRNQGEDS YRTQVTFFYP SGLSYRRVSG BACU011961/1-1122 FSFMSLDTLV VGGSRDLNVT LTVRNQGEDS YRTQVTFFYP SGLSYRRVSG 851 900 ENSTTRP00000011731/1-1139 AQNQRSQRSW RLICESDVST EGSGTLKSTS CSINHPIFPH S-EITFNITF ENSP00000441691/1-1153 LQNQRSQRSW RLACESASST EVSGALKSTS CSINHPIFPE NSEVTFNITF ENSBTAP00000054571/1-1152 SQNQRSQRFW RLTCESDVST EGSGILKRTS CGINHPIFLD NSEITFNVTF bmy_00718T0/1-1011 AQNQRSQRSW RLICESDVST EGSGTLKSTS CSINHPIFPD N--------- BACU011961/1-1122 AQNQRSQRFW RLICESDVST EGSGTLKSTS CSINHPIFPE NSEITFNITF 901 950 ENSTTRP00000011731/1-1139 DVNPDAFFGN KLLLKANVTS ENNITGNNKT KFQLQLPVKY AVYMVVTSLE ENSP00000441691/1-1153 DVDSKASLGN KLLLKANVTS ENNMPRTNKT EFQLELPVKY AVYMVVTSHG ENSBTAP00000054571/1-1152 DVNPDTYFGN KLLLKANVTS ENNMPGNNKT QFQLELPVKY AVYMVVTSLE bmy_00718T0/1-1011 ---------- ---------S ENNIPGNNKT EFQLQLPVKY AVYVVVTSLE BACU011961/1-1122 DVNPDAFFGN KLLLKANVTS ENNIPGNNKT KFQLQLPVKY AVYMVVTSLE 951 1000 ENSTTRP00000011731/1-1139 VSTKYLNFTA SEKTHHIIEH QYQFNNLGRR KLPISVVFLV PIQLNKVTVW ENSP00000441691/1-1153 VSTKYLNFTA SENTSRVMQH QYQVSNLGQR SLPISLVFLV PVRLNQTVIW ENSBTAP00000054571/1-1152 ASTKYLNFTA SEKTVHAMEH QYQFNNLGRK KLPISVVFWI PIRLNKVPVW bmy_00718T0/1-1011 VSTKYLNFTA SEKTSHIIEH QYQFNNLGGR KLPISVVFLV PIQLNQVTVW BACU011961/1-1122 VSTKYLNFTA SEKTSHIIEH QYQFNNLGGR KLPISVVFLV PIQLNQVTVW 1001 1050 ENSTTRP00000011731/1-1139 DQLQVTFSQN LSSRCHTNK- -PSHSDFLGE LQKAPLLNCS IAVCQRIQCD ENSP00000441691/1-1153 DRPQVTFSEN LSSTCHTKER LPSHSDFLAE LRKAPVVNCS IAVCQRIQCD ENSBTAP00000054571/1-1152 SQPQVTFSQD VSSGCNTTEV APRHSDFLAE LKKSPVLNCS VAVCQRIQCA bmy_00718T0/1-1011 DQLHFTFSQN LSSRCHTNKS DPHRSDFLGE LKKTPLLNCS IAVCQRIQCD BACU011961/1-1122 DQLHVTFSQN LSSRCHTNKS DPRRSDFLGE LKKTPLLNCS IAVCQRIQCD 1051 1100 ENSTTRP00000011731/1-1139 IPSFGVQEEF KVTLKGNLSF DWYIKTSHNH LQVVSTADIL FDDSEFALLP ENSP00000441691/1-1153 IPFFGIQEEF NATLKGNLSF DWYIKTSHNH LLIVSTAEIL FNDSVFTLLP ENSBTAP00000054571/1-1152 IPSFGIQEEF KVTLKSNFSF DWYIKTSHNH LQVVSKAEIL FDESKFTLLP bmy_00718T0/1-1011 IPSFGVQEEF KVTLKGNLAF DWYIKTLHNH LQVVSTAEIL FDDSEFALLP BACU011961/1-1122 IPSFGVQEEF KVTLKGNLAF DWYIKTLHNH LQVVSTAEIL FDDSEFALLP 1101 1150 ENSTTRP00000011731/1-1139 GQGAFVRAQT ETKVEPYEVH NPVLLIVGSS AGGLLLLALI TGGLYKLGFF ENSP00000441691/1-1153 GQGAFVRSQT ETKVEPFEVP NPLPLIVGSS VGGLLLLALI TAALYKLGFF ENSBTAP00000054571/1-1152 GQDAFVMAQT GTKVESYEVH NPIPLIVGSS VGGLVLLALI SAGLYKLGFF bmy_00718T0/1-1011 GQGAFVRAQT ETKVEPYEVH NPVPLIVGSS VGGLVLLALV TAGLYKLGFF BACU011961/1-1122 GQGAFVRAQT ETKVEPYEVH NPVPLIVGSS VGGLVLLALV TAGLYKLGFF 1151 1200 ENSTTRP00000011731/1-1139 KRQYKDMITE AGPETAPPQQ ENSP00000441691/1-1153 KRQYKDMMSE GGPPGAEPQ- ENSBTAP00000054571/1-1152 KRQYKDMMTE PGPEVDTPQ- bmy_00718T0/1-1011 KRQYKDMITE AGPETASPQ- BACU011961/1-1122 KRQYKDMLTE AVPETASPQ-