KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:28 2014 Check: 00 .. Name: ENSP00000433433/1-646 Len: 1215 Check: 6483 Weight: 1.00 Name: ENSBTAP00000054620/1-1183 Len: 1215 Check: 3788 Weight: 1.00 Name: bmy_19076T0/1-1135 Len: 1215 Check: 4032 Weight: 1.00 Name: BACU001903/1-569 Len: 1215 Check: 2096 Weight: 1.00 // 1 50 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 MSQLSKNLGD PSPPEEAPKP AVYSRPTVLM RAPPASSRAP PVPWDPPPID bmy_19076T0/1-1135 ---------- ---------- ---------- ---------- ---------- BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 LQASLAAWQA PQPAWEAPQG QPPAPIAPMS QPPSLGGPMV QAPPLGGPMG bmy_19076T0/1-1135 ---------- ---------- --------MA QPPALGGPMV QAPPLGGPMG BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 KPPTPGVLMI HPPPPGAPLA QPPTPGVLMM HPSAPGAPMA HPPPPGTPMA bmy_19076T0/1-1135 KPPTPGVLMI HPPPPGAPMA QPPTPGVLMM HPSAPGAPMA HPPPPGTPMA BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 H--------- ---------- --PPPPGTPM AHPPPPGTPM VHPPPPGTPM bmy_19076T0/1-1135 HPPPPGTPMA HPPPPGTPMV HPPPPPGTPM AHPPPPGTPM VHPPPPGTPM BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 THPPPPGTPM AHP------- --PPPPATPM AHPPPPGTPM AQPPAPGVLI bmy_19076T0/1-1135 AHPPPPGTPM AHPPPPGTPM AHPPPPGTPM AHPPPPGTPM AQPPAPGVLI BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 PQPLTPGVLM VQPPAPGAPI AQPPPPAPLM AQPPPLGAPM AKPPGPGVLM bmy_19076T0/1-1135 PQPLTPGVLM VQPPAPGAPI AQPPPPAPLM AQPPPPGTPM AKPPGPGVLM BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 IHPAGSRPPI TQPPATGAPI VQPPAPAPPA QPMASWAPQA QPLILQIQSQ bmy_19076T0/1-1135 IHPAGSRAPI TQPPATGAPM VQPPAPAPPA QPMASWAPQA QPLILQIQSQ BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 VIRAPPPVPQ GPQAPPAPLA TPPGWQATSP GWQAPPQGWP ATPLGWSTTQ bmy_19076T0/1-1135 VIRAPPQVPQ GPQAPPAQLA TPPGWQATSP GWQAPPQGWP ATPLGWQTTQ BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 VTWPGPTIAW QAPLSVRPGP PPIRPGPPPI RPGPPPIRQA PPPIRQAPPL bmy_19076T0/1-1135 VTWPAPTIAW QAPLPVRPGP PPIRPGPPPI RPGPPPVRQA PPPIRQAPPL BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 IRQAPPPIRP APQVLATPPP LWQSLPPPPP LRQAPQTRLP TPQLRAAPPI bmy_19076T0/1-1135 IRQAPPPIRP APQVLATPPP LWQALPPPPP LRQAPQARLP TPQLRAAPPI BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000433433/1-646 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054620/1-1183 RAAPQVPTAP PAPQMPTAPP AVPQAPPTVM PAPLPVPLSA PQAVHCPPII bmy_19076T0/1-1135 RAAPQVPTAP PAPQMPTAPP AVPQVPPAVM PAPLPAALSA PQAVHCPPII BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000433433/1-646 ---------- -------MEF QEVQQTQA-L AWQAQKAPTH IWQPLPAQEA ENSBTAP00000054620/1-1183 WQAPKGQPPV PQEMPTSMEF QEVQQAQASL AWQAPKAQGQ FWQSLPTQEA bmy_19076T0/1-1135 WQAPKGQAPV PHEMPTSMEF QEVQQAQASL AWQAPKAPGQ FWQALPTQEA BACU001903/1-569 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000433433/1-646 QRQAPPLVQL EQPFQGAPPS QKAVQIQLPP QQAQASGPQA EVPTLPLQPS ENSBTAP00000054620/1-1183 QRQGPPLVQL EQPFQGAPAS QKALQIQLPT QQAQLSGSQA ELPSMQLQPS bmy_19076T0/1-1135 QRQGPPLVQL EQPFHGAPAS QKALQIQLPT QQAQPSGSQA ELPAMQLQPS BACU001903/1-569 ---------- ---------- ---------- ---------- ----MQLQPS 651 700 ENSP00000433433/1-646 WQAPPAVLQA QPGPPVAAAN FPLGSAKSLM TPSGECRASS IDRRGSSKER ENSBTAP00000054620/1-1183 WQGPSAALQG QPGAPLTGAN FPMGSAKSLM TSSGESRASS MDRRTSSKDR bmy_19076T0/1-1135 WQGPPSALQG QPGAPLVGAN FPMGSAKSLM TPSGESRASS IDRRTSSKER BACU001903/1-569 WQGPPSALQG QPGAPLVGAN FPMGSAKSLM TPSGESRASS IDRRTSSKER 701 750 ENSP00000433433/1-646 RTSSKERRAP SKDRMIFAAT FCAPKAVSAA RAHLPAAWKN LPATPETFAP ENSBTAP00000054620/1-1183 RTSSKERKAP LKDRMIFGGT FCAPRAMPTA GAHLPTPWKN LPTTSETFNA bmy_19076T0/1-1135 RTSSKERKAP SKDRMIFGGT FCAPRAMPTA GAHLPTPWKN LPATSETFTA BACU001903/1-569 RTSSKERKAP SKDRMIFGGT FCAPRAMPTA GAHLPTPWKN LPATSETFTA 751 800 ENSP00000433433/1-646 SSSVFPATSQ FQPASLNAFK GPSAASETPK SLPYALQDPF ACVEALPAVP ENSBTAP00000054620/1-1183 TPRVFPSTSQ FQPASSNAFK GPSATSEAPK SLPFTLQDPF ACIEALPAIP bmy_19076T0/1-1135 TLRVFPSTSQ FQPASSNAFK GPSATSETPK SLPLALQDPF ACIEALPAVP BACU001903/1-569 TPRVFPSTSQ FQPASSNAFK GPSATSETPK SLPLALQDPF ACIEALPAVP 801 850 ENSP00000433433/1-646 WVPQPNMNAS KASQAVPTFL MATAAAPQAT ATTQEASKTS VEPPRRSGKA ENSBTAP00000054620/1-1183 WVPQPNVNSS KASKAGPSIL MATAAAPQVM AITQEASKTS AEPPRRSGKA bmy_19076T0/1-1135 WVPQPNVNAS KASKAGPSIL MATAAAPKAM ATTQEASKTS AEPPRRSGKA BACU001903/1-569 WVPQPNVNAS KASKAGPTIL MATAAAPKAM ATTQESSKTS AEPLRRSGKA 851 900 ENSP00000433433/1-646 TRKKKHLEA- QEDSRGHTLA FHDWQGPRPW ENLNLSDWEV QSPIQVSGDW ENSBTAP00000054620/1-1183 TRKKKHLNTE EEDSSGKMLN MCHWQAPRRW ESLDLNDWEV QTPIQFLCDW bmy_19076T0/1-1135 TRKKKHLNTE EEDGRGQMLS MRTWQAPRPW ESVDFNDWEV QTPIQVLCDW BACU001903/1-569 TRKKKHLNTE EEDGRGQMLS MCTWQAPRPW ESVDFNNWEV QTPIQVLCDW 901 950 ENSP00000433433/1-646 EHPNTPRGLS GWEGPSTSRI LSGWEGPSAS WALSAWEGPS TSRALGLSES ENSBTAP00000054620/1-1183 EGPSTSRILS GWEGLSTSQI LSGWEGPSTS WALSAWEGPS TSRALGLWES bmy_19076T0/1-1135 EGLSTSHGLS GWEGPSTSRI LSGWEGPSTS WALSAWEGPS TSRALGLWES BACU001903/1-569 EGLSISHGLS GWEGPSTSRI LSGWEGPSTS WALSAWEGPS TSRALGLWES 951 1000 ENSP00000433433/1-646 PGSSLPVVVS EVASVSPGSS ATQDNSKVEA QPLSPLDERA NALVQFLLVK ENSBTAP00000054620/1-1183 PVSPPSLIIS ELPTLAQGCG ATQYDPKLET QPLSPLDERA NALVQFLLVK bmy_19076T0/1-1135 PVSPPSLIIS ELPNLAQGFG ATQDDPKLET QPLSPLDERA NALVQFLLVK BACU001903/1-569 PVSPPSLIIS ELPNLAQGFG ATQDDPKLET QTLSPLDERA NALVQFLLVK 1001 1050 ENSP00000433433/1-646 DQAKVPVQRS EMVKVILREY KDECLDIINR ANNKLECAFG YQLKEIDTKN ENSBTAP00000054620/1-1183 DQAKVPIKRS EMVKFIIREY KDECLEIISR ASHKLECVFG YQLKEIDPQN bmy_19076T0/1-1135 DQAKVPIKRS EMVKFIIREY KDECLEIISR ASHKLECVFG YQLKEIDPKN BACU001903/1-569 DQAKVPIKRS EMVKFIIREY KDECLEIISR ASHKLECVFG YQLKEIDPKN 1051 1100 ENSP00000433433/1-646 HAYIIINKLG YHTGNLVASY LDRPKFGLLM VVLSLIFMKG NCVREDLIFN ENSBTAP00000054620/1-1183 HSYILINK-- GRKGDTGVSY LDRPKLGLLM VVLSLIFMKG NCVREDLIFT bmy_19076T0/1-1135 HSYILINK-- GRKGEAASSY LDRPKLGLLM VVLSLIFMKG NCVREDLIFT BACU001903/1-569 HSYILINK-- GRKGEAASSY LDRPKLGLLM VVLSLIFMKG NCVREDLIFT 1101 1150 ENSP00000433433/1-646 FLFKLGLDVR ETNGLFGNTK KLITEVFVRQ KYLEYRRIPY TEPAEYEFLW ENSBTAP00000054620/1-1183 FLCKLGLNIR ETHGLFGNTK KLITEVFVRE KYLEYRRIPF TEPEEHEFLW bmy_19076T0/1-1135 FLYKLGLDVR ETHGLFGNTR KLITEVFVRE KYLEYRQIPF TEPAEYEFLW BACU001903/1-569 FLYKLGLDVR ETHGLFGNTR KLITEVFVRE KYLEYRQIPF TEPAEYEFLW 1151 1200 ENSP00000433433/1-646 GPRAFLETSK MLVLRFLAKL HKKDPQSWPF HYLEALAECE WEDTDEDEPD ENSBTAP00000054620/1-1183 GPRAFLETSK MIVLKFLARL YKKDPRCWPY QYYEALAECE SEDLDEDESG bmy_19076T0/1-1135 GPRAFLETSK MLVLKFLAKL YKKDPRCWPY QYYEVLTECE SEDLDEDEPG BACU001903/1-569 GPRAFLETSK MLVLKFLAKL YKKDPWCWPY QYYEALAECE SEDLDEDEPG 1201 1250 ENSP00000433433/1-646 TGDSAHGPTS RPPPR ENSBTAP00000054620/1-1183 PDDKTDDPTS SPPPH bmy_19076T0/1-1135 PDDKADDPTS SPPPR BACU001903/1-569 PDDKADDPTS SPPPR