KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:29 2014 Check: 00 .. Name: ENSP00000231721/1-782 Len: 848 Check: 6214 Weight: 1.00 Name: ENSBTAP00000054644/1-775 Len: 848 Check: 6589 Weight: 1.00 Name: ENSTTRP00000001138/1-765 Len: 848 Check: 5382 Weight: 1.00 Name: bmy_11561T0/1-837 Len: 848 Check: 6592 Weight: 1.00 Name: BACU005562/1-749 Len: 848 Check: 3412 Weight: 1.00 // 1 50 ENSP00000231721/1-782 ---------- ---------- --------MA PSAWAICWLL GGLLLHGGSS ENSBTAP00000054644/1-775 ---------- ---------- -----FLSMA PSAWAVCCLL GGLLLRGGS- ENSTTRP00000001138/1-765 ---------- ---------- --------MA PSAWAICCLL WGLLLRGGS- bmy_11561T0/1-837 MEQTTTSGSG SGRTQGNSTS SLVSRFPSMA PSAWAICCLL WGLLLRGGS- BACU005562/1-749 ---------- ---------- --------MA PSAWAICCLL WGLLLRGGS- 51 100 ENSP00000231721/1-782 GPSPGPSVPR LRLSYRDLLS ANRSAIFLGP QGSLNLQAMY LDEYRDRLFL ENSBTAP00000054644/1-775 -PNPGPSVPR LRLSFRDLLS ANRSAIFLGP RGSLDLQALY LDEYRDRLFL ENSTTRP00000001138/1-765 -LSPGPSVPR LRLSYRDLLS ANRSAVFLGP RGSLDLRALY LDEYRDRLFL bmy_11561T0/1-837 -LSPGPSVPR LRLSYRDLLS ANRSAVFLGP RGSLDLRALY LDEYRDRLFL BACU005562/1-749 -LSPGPSVPR LRLSYRDLLS ANRSAVFLGP RGSLDLRALY LDEYRDRLFL 101 150 ENSP00000231721/1-782 GGLDALYSLR LDQAWPDPRE V--------- ---------- ---------- ENSBTAP00000054644/1-775 GGRDAIYSLR LDQTWPDPRE V--------- ---------- ---------- ENSTTRP00000001138/1-765 GGRDAIYSLR LDQAWLDPRE V--------- ---------- ---------- bmy_11561T0/1-837 GGRDAIYSLR LDQAWLDPRE VSWTDRKVAL SESWATPDGR PAGSTEAVRS BACU005562/1-749 GGRDAIYSLR LDQAWLDPRE V--------- ---------- ---------- 151 200 ENSP00000231721/1-782 ---------L WPPQPGQREE CVRKGRDPLT ECANFVRVLQ PHNRTHLLAC ENSBTAP00000054644/1-775 ---------L WPPQPGQREE CVHKGRDPLV ECANFVRVLH PHNRTHLLAC ENSTTRP00000001138/1-765 ---------L WPPQPGQREE CVRKGRDPSV ECANFVRVLQ PHNRTHLLAC bmy_11561T0/1-837 GVTQAVFQVL WPPQPGQREE CVRKGRDPSI IRANFVRVLQ PHNRTHLLAC BACU005562/1-749 ---------- ---------E C--------- --ANFVRVLQ PHNRTHLLAC 201 250 ENSP00000231721/1-782 GTGAFQPTCA LITVGHRGEH VLHLEPGSVE SGRGRCPHEP SRPFASTFID ENSBTAP00000054644/1-775 GTGAFQPTCA LLAVGHRGEH VLHLEPRSME SGRGRCPHEP SRPFASTFVG ENSTTRP00000001138/1-765 GTGAFQPTCA LIAVGHRGEH VLRLEPRSVE SGRGRCPHEP SRPFASTFVG bmy_11561T0/1-837 GTGAFQPTCT LIAVGHRGEH VLHLEPRSVE SGRGRCPHEP SRPFASTFVG BACU005562/1-749 GTGAFQPTCA LIAVGHRGEH VLRLEPRSVE SGRGRCPHEP SRPFASTFVG 251 300 ENSP00000231721/1-782 GELYTGLTAD FLGREAMIFR SGGPRPALRS DSDQSLLHDP RFVMAARIPE ENSBTAP00000054644/1-775 GELYTGLNAD FLGHEAMIFR SGGPRPALRS DSDQNLLHDP RFVLAARIPD ENSTTRP00000001138/1-765 GELYTGLNAD FLGREAMIFR SGGPRPALRS DSDQNLLHEP RFVMATRIPD bmy_11561T0/1-837 GELYTGLNAD FLGREAMIFR SGGSRPALRS DSDQNLLHDP RFVMATRIPD BACU005562/1-749 GELYTGLNAD FLGREAMIFR SGGPRPALRS DSDQNLLHDP RFVMATRIPD 301 350 ENSP00000231721/1-782 NSDQDNDKVY FFFSETVPSP DGGSNHVTVS RVGRVCVNDA GGQRVLVNKW ENSBTAP00000054644/1-775 NSDPDDDKVY FFFSETVPSP DGGPGRVTIS RVGRVCVNDA GGQRVLVNKW ENSTTRP00000001138/1-765 NSDQDDDKVY FFFSETVPSP DGGPGRVTVS RVGRVCVNDA GGQRVLVSKW bmy_11561T0/1-837 NSDQDDDKVY FFFSETVSSP DGGPGRV-IS RVGRVCVNDA GGQRVLVSKW BACU005562/1-749 NSDQDDDKVY FFFSETVPSP DGGPGRV-IS RVGRVCVNDA GGQRVLVSKW 351 400 ENSP00000231721/1-782 STFLKARLVC SVPGPGGAET HFDQLEDVFL LWPKAGKSLE VYALFSTVSA ENSBTAP00000054644/1-775 STFLKARLLC SVPGPGSAET HFDQLEDVFL LWPNSGKSLE VYALFSTVSA ENSTTRP00000001138/1-765 STFLKARLLC SVPGPGGAET HFDQLEDVFL LWPNSGKSLE VYALFSTVSA bmy_11561T0/1-837 STFLKARLLC SVPGPGGAET HFDQLEDVFL LWPNAGKSLE VYALFSMVSA BACU005562/1-749 STFLKARLLC SVPGPGGAET HFDQLEDVFL LWPNAGKSLE VYALFSTVSA 401 450 ENSP00000231721/1-782 VFQGFAVCVY HMADIWEVFN GPFAHRDGPQ HQWGPYGGKV PFPRPGVCPS ENSBTAP00000054644/1-775 VFQGYAICVY HMADIWEVFK GPFAHQDGPQ HQWGPYGGKV PFPRPGMCPS ENSTTRP00000001138/1-765 VFQGYAVCVY HMADIWEVFK GPFAHQDGPQ HQWGAYAGKV PFPRPGVCPS bmy_11561T0/1-837 VFQGYAVCVY HMADIWEVFK GPFAHQDGPQ HQWGPYAGKV PFPRPGVCPS BACU005562/1-749 VFQGYAVCVY HMADIWEVFK GPFAHQDGPQ HQWGPYAGKV PFPRPGVCPS 451 500 ENSP00000231721/1-782 KMTAQPGRPF GSTKDYPDEV LQFARAHPLM FWPVRPRHGR PVLVKTHLAQ ENSBTAP00000054644/1-775 KMTAQPGRPF GSTKDYPDEV LQFARAHPLM FRPVRPRRGR PVLVKTHLAQ ENSTTRP00000001138/1-765 KMTAQPGRPF GSTKDYPDEV LQFARAHPLM FRPVRPRRGR PVLVKTHLAQ bmy_11561T0/1-837 KMTAQPGRPF GSTKDYPDEV LQFARAHPLM FRPVRPRRGR PVLVKTHLAQ BACU005562/1-749 KMTAQPGRPF GSTKDYPDEV LQFARAHPLM FRPVRPRRGR PVLVKTHLAQ 501 550 ENSP00000231721/1-782 QLHQIVVDRV EAEDGTYDVI FLGTDSGSVL KVIALQAGGS AEPEEVVLEE ENSBTAP00000054644/1-775 QLRQIVVDRV EAEDGTYDVI FLGTDSGSVL KVIALQGAGS AEPEEVVLEE ENSTTRP00000001138/1-765 QLRQIVVDRV EAEDGSYDVI FLGTDSGSVL KVIALQVGDP DEPEEVVLEE bmy_11561T0/1-837 QLRQIVVDRV EAEDGTYDVI FLGTDSGSVL KVIALQVGGP AEPEEVVLEE BACU005562/1-749 QLRQIVVDRV EAEDGTYDVI FLGTDSGSVL KVIALQSLEE AENRDAG-EV 551 600 ENSP00000231721/1-782 LQVFKVPTPI TEMEISVKRQ MLYVGSRLGV AQLRLHQCET YGTACAECCL ENSBTAP00000054644/1-775 LQVFKVPTPI TEMEISVKRQ MLYVGSRLGV ARLQLHQCET YGSACAECCL ENSTTRP00000001138/1-765 LQVFKVPTPI TEMEISVKRQ MLYVGSRLGV ARLQLHQCET YGSACAECCL bmy_11561T0/1-837 LQVFKVPTPI TEMEISVKRQ MLYVGSRLGV ARLQLHQCET YGSACAECCL BACU005562/1-749 LLLSQVPTPI TEMEISVKRQ MLYVGSRLGV ARLQLHQCET YGSACAECCL 601 650 ENSP00000231721/1-782 ARDPYCAWDG ASCTHYRPSL GKRRFRRQDI RHGNPALQCL GQSQEEEAVG ENSBTAP00000054644/1-775 ARDPYCAWDG ASCTRYRPGS NKRRFRRQDI RHGNPALQCL GQSQEEETAG ENSTTRP00000001138/1-765 ARDPYCAWDG ASCTRYRPGT SKRRFRRQDI RHGNPALQCL GQSQEEETAG bmy_11561T0/1-837 ARDPYCAWDG ASCTRYRPGT SKRRFRRQDI RHGNPALQCL GQSQEEETAG BACU005562/1-749 ARDPYCAWDG ASCTRYRPGT SKRRFRRQDI RHGNPALQCL GQSQEEETAG 651 700 ENSP00000231721/1-782 LVAATMVYGT EHNSTFLECL PKSPQAAVRW LLQRPGDEGP DQVKTDERVL ENSBTAP00000054644/1-775 LVATTTVYGT EHNSTFLECL PKSPQAAAHW FLQRPGDERP EQVKTDERVL ENSTTRP00000001138/1-765 LVATTTIYGT EHNSTFLECL PKSPQAAVRW FLQRPGNERP DQGETDERVL bmy_11561T0/1-837 LVATTTVYGT EHNSTFLECL PKSPQAAVRW FLQRPGDERP DQVKTDERIL BACU005562/1-749 LLATTTVYGT EHNSTFLECL PKSPQATVRW FLQRPGDERP DQVKTDERLL 701 750 ENSP00000231721/1-782 HTERGLLFRR LSRFDAGTYT CTTLEHGFSQ TVVRLALVVI VASQLDNLFP ENSBTAP00000054644/1-775 QTEQGLLFRR LNRLDAGTYT CMTLEHGFSQ VVVRLALEVI VPAQLDILFP ENSTTRP00000001138/1-765 -TEQGLL-RR LNRLDAN--Y CMTLEHGF-- VVVRLALEVI MAAQLDTLFP bmy_11561T0/1-837 QTEQGLLFRR LNRLDAGTYT CMTLEHGFSQ VVVRLALEVI MAAQLDTLFP BACU005562/1-749 QTEQGLLFRR LNRLDAGTYT CMTLEHGFSQ VVVRLALEVI MAAQLDTLFP 751 800 ENSP00000231721/1-782 PEPKPEEPPA RGGLASTPPK AWYKDILQLI GFANLPRVDE YCERVWCRGT ENSBTAP00000054644/1-775 REPRPEEPTA RGGPTSPYSK AWYKDIMQLI GFANLPRVDE YCERVWCPS- ENSTTRP00000001138/1-765 GELRPEE-AA QGGPASTPSK AWYKDILQLI GFANLPRVDE YCERVWCPS- bmy_11561T0/1-837 REPRPEEPAA QGGPASTPSK AWYKDILQLI GFANLPRVDE YCERVWCPS- BACU005562/1-749 REPRPEEPAA QGGPASTPSK AWYKDILQLI GFANLPLVDE YCERVWCPS- 801 850 ENSP00000231721/1-782 TECSGCFRSR SRGKQARGKS WAGLELGKKM KSRVHAEHNR TPREVEAT ENSBTAP00000054644/1-775 -------RSR TRGKQAKGKS WVGLELGKKV KSRVQAERNR TPREPAEQ ENSTTRP00000001138/1-765 -------RSR GRSKQAKGKS WVGLELGKKV KSRVQAERNR TPREVEAT bmy_11561T0/1-837 -------RSR GRSKQAKGKS WVGLELGKKV KSRVQAERNR TPREVEAT BACU005562/1-749 -------RSR GRSKQAKGKS WVGLELGKKV KSRVQAERNR TPREVEAT