KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:39 2014 Check: 00 .. Name: ENSP00000454748/1-1453 Len: 1455 Check: 3451 Weight: 1.00 Name: ENSBTAP00000054662/1-1381 Len: 1455 Check: 2278 Weight: 1.00 Name: bmy_04197T0/1-733 Len: 1455 Check: 4642 Weight: 1.00 Name: ENSTTRP00000005171/1-1111 Len: 1455 Check: 3109 Weight: 1.00 Name: BACU015389/1-970 Len: 1455 Check: 7196 Weight: 1.00 // 1 50 ENSP00000454748/1-1453 MIESENLNQE EIIKELCLCN GLSYEMVGQE GSDTSKLEMF FLGYPRIVGL ENSBTAP00000054662/1-1381 MIECENINQH DIIKELCLCN GLSYEMIGQE GSDTSKLEMF FSGYPRIVGL bmy_04197T0/1-733 MIECENLNQE DIIKELCLCN GLSYEMIGQE GSDTSKLEMF FSGYPRIVGL ENSTTRP00000005171/1-1111 MIECENLNQE DIIKELCLCN GLSYEMIGEE GSDTSKLEMF FSGYPRILGL BACU015389/1-970 MIECENLNQE DIIKELCLCN GLSYEMIGQE GSDTSKLEMF FSGYPCIVGL 51 100 ENSP00000454748/1-1453 SLFPNLTSLT IVAQDIKEIS GLEPCLQLKE LWIAECCIEK IEGLQECRNL ENSBTAP00000054662/1-1381 SLFPNLTSLT IVAQDIKEIS GLETCLQLKE LWIAECCIEK IGGLQECRSL bmy_04197T0/1-733 SLFPNLTSLT IVAQDIKEIS GLETCLRLKE LWLAECCIEK IEGIQECRNL ENSTTRP00000005171/1-1111 SLFPNLTSLT IVAQDIKEIS GLETCLRLKE LWIAECYIKK IEGIQECRNL BACU015389/1-970 SLFPNLTSLT IVAQDIKEIS GLETCLRLKE LWIAECYIEK IEGIQECRNL 101 150 ENSP00000454748/1-1453 EKLYLYFNKI SKIENLEKLI KLKVLWLNHN TIKNIEGLQT LKNLKDLNLA ENSBTAP00000054662/1-1381 EKLYLYYNKI SKIENLEKLS RLEVLWLNHN AIKYIEGLQT LKNLSDLNLA bmy_04197T0/1-733 EKLYLYFNKI SKIENLEKLS RLEVLWLNHN AIKNIEGLQT LKNLSDLNLA ENSTTRP00000005171/1-1111 EKLYLYFNKI SKIENLEKLS RLEVLWLNHN TIKNIEGLQT LKNLSDLNLA BACU015389/1-970 EKLYLYFNKI SKIENLEKLS RLEVLWLNHN AIKNIE---- ---------- 151 200 ENSP00000454748/1-1453 GNLINSI--G RCLDSNEQLE RLNLSGNQIC SFKELTNLTR LPCLKDLCLN ENSBTAP00000054662/1-1381 GNLISSIVKG RCLDPNEQLE RLNLSGNQIC SFKDLTNLTR LRHLKDLCLN bmy_04197T0/1-733 GNLISSI--G RCLDPNEQLE RLNLSGNQIY SFKDLTNLTR LCRLKDLCLN ENSTTRP00000005171/1-1111 GNLISSI--G RCLDPNEQLE RLNLSGNQIC SSKDLTNLTR LRCLKDLCLN BACU015389/1-970 ---------- ---------- ---------- ---DLTNLTR LCRLKDLCLN 201 250 ENSP00000454748/1-1453 DPQYTTNPVC LLCNYSTHVL YHLPCLQRFD TLDVSAKQIK ELADTTAMKK ENSBTAP00000054662/1-1381 DPQYKTNPVC LLCNYSTHVL YHLPCLQRLD TFDVSPKQIK ELADTTAMKK bmy_04197T0/1-733 DPQYKTNPVC LLCNYSTHVL YHLPCLQRLD TFDVSAKQIK ELADTTAMKK ENSTTRP00000005171/1-1111 DPQYKTNPVC LLCNYSTHVL YHLPCLQRLD TFDVSAKQIK ELADTTAMKK BACU015389/1-970 DPQYKTNPVC LLCNYSTHVL YHLPCLQRLD TFDVSAKQIK ELADTTAMKK 251 300 ENSP00000454748/1-1453 IMYYNMRIKT LQRHLKEDLE KLNDQKCKLQ KLPEERVKLF SFVKKTLERE ENSBTAP00000054662/1-1381 IMYYNMRIKT VQRHLNEDLE KLNDRKCKLQ KLPEERIKLF NFLKKNLERE bmy_04197T0/1-733 IMYYNMRIKT VQRHLNEDLE KLNDRKCKLQ KLPEERIKLF SFLKKNLERE ENSTTRP00000005171/1-1111 IMYYNMRIKT VQRHLNEDLE KLNDRKCKLQ KLPEERIKLF SLLKKNLERE BACU015389/1-970 IMYYNMRIKT VQRHLNEDLE KLNDRKCKLQ KLPEERIKLF SFLKKNLERE 301 350 ENSP00000454748/1-1453 LAELKGSGKG HSDGSNNSKV TDPETLKSCE TVTEEPSLQQ KILAKLNALN ENSBTAP00000054662/1-1381 LTELKGSGKG HNDRSNNNKV TELEKSKICE TVTEEPSLQQ KIVIKLNALN bmy_04197T0/1-733 LTELRGSGKG HNDRPSNNKV TELEKSKNCE TVTEEPSLQQ KIVTKLNALN ENSTTRP00000005171/1-1111 LTELRGSGKG HNDRSSNNKV TELEKSKNCE TVTEEPSLQQ KIVTKLNALN BACU015389/1-970 LTELRGSGKG HNDRSSNNKV TELEKSKNCE TVTEEPSLQQ KIVTKLNALN 351 400 ENSP00000454748/1-1453 ERVTFWNKKL DEIEAIYHIE VKQKKKSHGL LIPLLLIELE TVGNFHFEEG ENSBTAP00000054662/1-1381 ERVTFWNKKL DEIEAIYRIE VKRKKKSHSL LIPFLLIELE TVGNIHFEEG bmy_04197T0/1-733 ERVTFWNKKL DEIEGIYRIE VKQKKKSHSL LIPFLLIELE TVGNIHFEEG ENSTTRP00000005171/1-1111 GRVTFWNKKL DEIEGIYRIE VKQKKKSHSL LIPFLLIELE TVGNIYFEEG BACU015389/1-970 ERVTFWNKKL DEIEGIYRIE VKQKKKSHTL LIPFLLIELE TVGNIHFEEG 401 450 ENSP00000454748/1-1453 TRSDDWFNFC YELILSRFCA WDFRTYGITG VKVKRIIKVN NRILRLKFEE ENSBTAP00000054662/1-1381 TRSDDWFNSC YELILSRFCT WDFRTYGITG VKVKRVIKVN NRILRLKFEE bmy_04197T0/1-733 TRSDDWFNSC YELILSRFCT WDFRTYGITG VKVKRVIKVN NRILRLKFEE ENSTTRP00000005171/1-1111 TRSDDWFNSC YELILSRFCT WDFRTYGIRG VKVKRVIKVN NRILRLKFEE BACU015389/1-970 TRSDDW---- ---------- ---------- ---------- ---------- 451 500 ENSP00000454748/1-1453 KFQKFLENED MHDSESYRRM LECLFYVFDP EVSVKKKHLL QILEKGFKDS ENSBTAP00000054662/1-1381 KFQKFLDNEH MHDSESYRKM LECLFYVFDP EITVKKKHLL QILEKGFKDS bmy_04197T0/1-733 KFQKFLDNED MHDSESYRQM LECLFYVFDP EVTVKKKHLL QILEKGFKDS ENSTTRP00000005171/1-1111 KFQKFLDNED MHDSKSYRQM LECLFYVFDP EVTVKKKHLL QILEKGFKDS BACU015389/1-970 ---------- -----SCRQM LECLFYVFDP EVTVKKKHLL HILEKGFKDS 501 550 ENSP00000454748/1-1453 ETSKLPLKKE AIIVSNSLSI SECPRIEFLQ QKHKDEKKIS LKHELFRHGI ENSBTAP00000054662/1-1381 ETSKLPLRKE AVILANSLSI CECPRIEILQ QKYKDEKKNS LEHELFRHGI bmy_04197T0/1-733 ETSKLPLRKE AVILANSLSI CECPRIEFLQ QKYKDEKKKS LEHELFRHGI ENSTTRP00000005171/1-1111 ETSKLPLRKE AVILANSLSI CECPRIEFLQ QKYKNEKKNS LEHELFRHGI BACU015389/1-970 ETSKLPLRKE AVILANSLSI CECPRIEFLQ QKYKDEKKNS LEHELFRH-- 551 600 ENSP00000454748/1-1453 LLITKVFLGQ SVQAHEKESI SQSNYPMVNS VFIPRKYLLN SVMGQRNCDC ENSBTAP00000054662/1-1381 LLITKVFLGQ SVQAHDHDSI SQANYPMINS VFIPRKYLLN SIMGQRNCDC bmy_04197T0/1-733 LLITKVFLGQ SVQARDQDSI SQANYPMINS VFIPRKYLLN PIMGQRNCDC ENSTTRP00000005171/1-1111 LLITKVFLGQ SVQAHDQDSI SQANYPMINS VFIPRKYLLN SIMGQRNCDC BACU015389/1-970 ---------- ---------- ---------- ---------D SIMGQRNCDC 601 650 ENSP00000454748/1-1453 SVRQCKWFVF DHDLVLPEYV VEFEYITMVK APSLFSVFNN VILEESKKNP ENSBTAP00000054662/1-1381 SVRQCKWFVF DHDLVLPEYI VEFEYITVVK AHSLFSSFNN VILEESKKNS bmy_04197T0/1-733 SIRQYKWFVF DHDLV----- ---------K AHSLFSAFNN VILEESKKNS ENSTTRP00000005171/1-1111 SIRQYKWFVF DHDLVLPEYI VEFEYITVVK AHSLFSAFNN VILEESKKNS BACU015389/1-970 SIRQYKWFVF DHDLVLPEYV VEFEYIT--- ---------- ---------- 651 700 ENSP00000454748/1-1453 EVSVFSKDLK FDDEVIKMEP RIKARPKLIS LDDKTILSLA KTSVYSHIVS ENSBTAP00000054662/1-1381 EGSVLSQDLK FDDEVIKMDP RIKPRPKLIS LDDKTILSLA KTSVYGHIVS bmy_04197T0/1-733 EGSVLSQDLK FDDEVIKMDP RIKPRPKLTS LDDKTILSLA KTSIYSHIVS ENSTTRP00000005171/1-1111 EGSVLSQDLK FDDEVIKMDP RIKPRPKLTR LDDKTILSLA KTSIYSHIVS BACU015389/1-970 ---------- ---------- ---------- ---------- --------VS 701 750 ENSP00000454748/1-1453 LNLHGNSLSK LRDLSKLTGL RKLNISFNEF TCLDDVYHLY NLEYLDASHN ENSBTAP00000054662/1-1381 LNLHGNSLSK LRDLSKLTGL RKLNISFNEF TCLDDVYHLY NLEYLDASHN bmy_04197T0/1-733 LNLHGNSLSK LRDLSKLTGL RKLNISFNEF TCLDDVCHLV RTVFL----- ENSTTRP00000005171/1-1111 LNLHGNSLSK LRDLSKLTGL RKLNISFNEF TCLDDIYHLX NLEYLDASHN BACU015389/1-970 LNLHGNSLSK LRDLSKLTGL RKLNISFNEF TCLDDVYHLY NLEYLDASHN 751 800 ENSP00000454748/1-1453 HVITLEGFRG LMKLKHLDLS WNQLKKSGNE INMLCKHTTS LLTLDIQHNP ENSBTAP00000054662/1-1381 HVITLEGFRG LMKLKHLDLS WNQLKKSGDE INMLCKHTTS LLTLDIRHNP bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 HVITLEGFRG LMKLKHLDLS WNQLKKSGDE INMLCKHTTS LLTLDIRHNP BACU015389/1-970 HVITLEGFRG LMKLKHLDLS WNQLKKSGDE INMLCKHTTS LLTLDIRQNP 801 850 ENSP00000454748/1-1453 WQKPATLRLS VIGRLKTLTH LNGVFISEEE ATAAMKFIAG TRITQLSLLR ENSBTAP00000054662/1-1381 WQKPATLRLS VIGRLKTLTH LDGVLISEEE ATAAMKFISG TKITQFSLLR bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 WQKPATLRLS VIGRLKTLTQ LDGVLISEEE ATAAKKFISG TKITQLSLLR BACU015389/1-970 WQK------- ---------- ---------- ---------- -----LSLLR 851 900 ENSP00000454748/1-1453 HSSTKEERPR ILSIWPSAKI LTQVSKLGPH LHLSGNCYLK ITALNLDGQH ENSBTAP00000054662/1-1381 HSSTKEERPR ILSIWPSAKI LTQTSKLGPH SHMSGNWYLK ITALNLDGQH bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------K ENSTTRP00000005171/1-1111 HSSTKEERSR ILSIWPSAKI LTQISKLGPH SHLSGNWYLK ITALNLDGQH BACU015389/1-970 HSSTKEERSR ILSIWPSAKI LTQTSKLGPH SHLSGNWYLK ITALNLDGQH 901 950 ENSP00000454748/1-1453 LFEITNLEKL ENLKWASFSN NNLTKMEGLE SCINLEELTL DGNCISKIEG ENSBTAP00000054662/1-1381 LFEITNLEKL ENLKWASFSN NNLTKMEGLE SCVNLEELTL DGNCISKIEG bmy_04197T0/1-733 LFK------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 LFEITNLEKL ENLKWASFSN NNLTKMEGLE SCVNLEELTL DGNCISKIEG BACU015389/1-970 LFEITNLEKL ENLKWASFSN NNLTKMEGLE SCVNLEELTL DGNCISKIE- 951 1000 ENSP00000454748/1-1453 ISKMTKLTRL SINNNLLTGW EEHTFDNMLH LHSLSLENNR ITSLSGLQKS ENSBTAP00000054662/1-1381 ISKLTKLTHL SINNNLLTGL EKHIFDNMLH LHSLSLENNR ITSLSGLQKA bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 ISKLTKLTRL SINNNLLTGL EKHTFDNMLH LHSLSLENNK ITSLSGLQKA BACU015389/1-970 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000454748/1-1453 FTLVELYISN NYIAVNQEMH NLKGLCNLVI LDMCGNIIIW NQENYRLFVI ENSBTAP00000054662/1-1381 FTLIELYVSN NYIALNQEIY NLKGLCNLVI LDMYGNIIVW NQENYRLFVI bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 FTLIELYIGN NYIALNQEIY NLKGLCNLVI LDMYGNIIVW NQENYRLFVI BACU015389/1-970 ---------- ---------- ---------- -DMYGNIIVW NQENYRLFVI 1051 1100 ENSP00000454748/1-1453 FHLPELKALD GIPIEPSETD SAKDLFGGRL TSDMIAERQG HSNFKQMQEL ENSBTAP00000054662/1-1381 FHLPELKALD GISIEPPETE CAKDLFGGRL TSDMIAERQG HPNFTQMQEL bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 FHLPELKGLD GISIEPPEIE CAKDLFGGRL TSDMIAERQG HSNFTQMQEL BACU015389/1-970 FHLPELKALD GISIEPPETE CAKDLFGGRL TSDMIGERQG HSNFTQMQEL 1101 1150 ENSP00000454748/1-1453 NWTSSSIRTV DLIPVDQFRN VCNVNLQNNH LTSFSGLIYL PNVKVLCLNY ENSBTAP00000054662/1-1381 NWTSSSIRTV DLIPVDQFRN VCNVNLQNNN LTSFSGLIYL PNVKVLCLNY bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 NWTSSSI--- ---------- ---------- ---------- ---------- BACU015389/1-970 NWTSSSI--- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000454748/1-1453 NHIESIMPRL KPQTHLTSRQ LLYQKVPSSG YGQQGISKTN RDIMSSENLP ENSBTAP00000054662/1-1381 NHIESIIPRL KPQTHLTSRQ LLYQKVPSSG YGQQGTSKMN RDTTSSENLP bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 ---------- ---------- ---------- ---------- S--------- BACU015389/1-970 ---------- ---------- ---------- ---------- RDTMSSENLP 1201 1250 ENSP00000454748/1-1453 PIMHSLEVLH LGYNGICNLI QLQLNRLRNL KFLFLQGNEI SQVEGLDNLV ENSBTAP00000054662/1-1381 PIMNSLEVLH LGYNGICNLI QLQLNRLRNL KFLFLQGNEI SQIEGLDNLE bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 ---------- ---------- ---------- ---------- ---------- BACU015389/1-970 PIMHSLEVLH LGYNGICNLI QLQLNRLRNL KFLFLQGNEI SQVEGLDNLE 1251 1300 ENSP00000454748/1-1453 VLQELVVDHN RIRSFNDSAF AKPSSLLALH LEENRLRELG KLQSLVKLEK ENSBTAP00000054662/1-1381 VLQELVVDHN RIRAFNDSAF AKPSSLLALH LEENRLRELS KLQPLVKLEK bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 ---------- ---------- ---------- ---------- ---------- BACU015389/1-970 VLQELVVDHN RIRTFNDSAF AKPSSLLALH LEENRLRELS KLQPLVKLEK 1301 1350 ENSP00000454748/1-1453 LFLGYNKIQD ITELEKLDVI STLRELTVYG NPICRKMLHR HMLIFRLPNL ENSBTAP00000054662/1-1381 LFLGYNKIQD MAELEKLDGI SSLRELTVYG NPICRKMLHR HVLIFRLPNL bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 ---------- ---------- ---------- ---C------ ---------- BACU015389/1-970 LFLGYNKIQD MAELEKLDGI SSLRELTVYG NPICRKMLHR HVLIFRLPNL 1351 1400 ENSP00000454748/1-1453 QMLDGSPVNS DDRAKAEFHL AELQAKKNSL IPVTHSPMDG RSFGQVKTPP ENSBTAP00000054662/1-1381 QMLDGIPVNS DDRAKAEFHF SELQAKKNSV I--------- ---------- bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 ---------- ---------- ---------- ---IYSV--- ---------- BACU015389/1-970 QMLDGIPVNS DDRAKAEFHF SEPQAKKNSV IILLFTLFLL KYINY----- 1401 1450 ENSP00000454748/1-1453 IEITNVLLPS GFSHYLGSDV TLTPEVEEFL GATFQDQIEC NCLKRNEHTP ENSBTAP00000054662/1-1381 ---------- ---------- ---------- ---------- ---------- bmy_04197T0/1-733 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005171/1-1111 ---------- ---------- ---------- ---------- ---------- BACU015389/1-970 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000454748/1-1453 RNSPV ENSBTAP00000054662/1-1381 ----- bmy_04197T0/1-733 ----- ENSTTRP00000005171/1-1111 ----- BACU015389/1-970 -----