KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:45 2014 Check: 00 .. Name: ENSBTAP00000054698/1-455 Len: 685 Check: 5645 Weight: 1.00 Name: ENSP00000304422/1-462 Len: 685 Check: 6021 Weight: 1.00 Name: ENSTTRP00000015740/1-460 Len: 685 Check: 8321 Weight: 1.00 Name: bmy_02741T0/1-426 Len: 685 Check: 9122 Weight: 1.00 Name: BACU009187/1-680 Len: 685 Check: 6130 Weight: 1.00 // 1 50 ENSBTAP00000054698/1-455 MGTRPPKALL LLLLLRLLPP RGASAGSLQS PGLSECFQVN GADYRGHQNR ENSP00000304422/1-462 MGTQALQGFL FLLFLPLLQP RGASAGSLHS PGLSECFQVN GADYRGHQNR ENSTTRP00000015740/1-460 MGTRAPQGLL LLLLLRLLLP RGTSAGSLHN PGLSECFQVN GADYRGHQNR bmy_02741T0/1-426 ---MPGKG-- ----QDLPRP RRRR------ AGLSECFQVN GADYRGHQNR BACU009187/1-680 MGTRAPQGLL LLLLLRLLLP RGASAGNLHS PGLSECFQVN GADYRGHQNR 51 100 ENSBTAP00000054698/1-455 TGPRGAGRPC LYWDQTQQHS YSSASDPQGR WGLGAHNFCR NPDGDVQPWC ENSP00000304422/1-462 TGPRGAGRPC LFWDQTQQHS YSSASDPHGR WGLGAHNFCR NPDGDVQPWC ENSTTRP00000015740/1-460 TGPRGAGRPC LYWDQTQQHS YSSASDPHGR WGLGAHNFCR NPDGDVQPWC bmy_02741T0/1-426 TGPRGAGRPC LYWDQTQQHS YSSASDPHGR WGLGAHNFCR NPDGDVQPWC BACU009187/1-680 TGPRGAGRPC LYWDQTQQHS YSSASDPHGR WGLGAHNFCR NPDGDVQPWC 101 150 ENSBTAP00000054698/1-455 YVAETEEGIY WRYCDIPTCH MPGYLGCFVD SGAPPALSGP SGTSTKLTVQ ENSP00000304422/1-462 YVAETEEGIY WRYCDIPSCH MPGYLGCFVD SGAPPALSGP SGTSTKLTVQ ENSTTRP00000015740/1-460 YVAETEEGIY WRYCDIPTCH MPGYLGCFVD SGAPPALSGP SGTSTKLTVQ bmy_02741T0/1-426 YVAETEEGIY WRYCDIPTCH MPGYLGCFVD SGAPPALSGP SGTSTKLTVQ BACU009187/1-680 YVAETEEGIY WRYCDIPTCH MPGYLGCFVD SGAPPALSGP SGTSTKLTVQ 151 200 ENSBTAP00000054698/1-455 VCLRFCRMKG Y--------- ---------- ---------- --QLAGVEAG ENSP00000304422/1-462 VCLRFCRMKG Y--------- ---------- ---------- --QLAGVEAG ENSTTRP00000015740/1-460 VCLRFCRMKG Y--------- ---------- ---------- --QLAGVEAG bmy_02741T0/1-426 VCLRFCRMKG YQPDSHFRPR PLAPTTPPPP QPLSRGSPSL CSQLAGVEAG BACU009187/1-680 VCLRFCRMKG YQPDSHFRPR PLAPTTPPPP QPLSRGSPSL CSQLAGVEAG 201 250 ENSBTAP00000054698/1-455 YACFCGSESD LARGRPAPAT DCDQICFGHP GQLCGGDGRL GIYEEE---- ENSP00000304422/1-462 YACFCGSESD LARGRLAPAT DCDQICFGHP GQLCGGDGRL GVYE------ ENSTTRP00000015740/1-460 YACFCGSESD LARGRPASAT DCDQICFGHP GQLCGGDGRL GIYE------ bmy_02741T0/1-426 YACFCGSESD LARGRPAPAT DCDQICFGHP GQLCGGDGRL GIYEGEEWAG BACU009187/1-680 YACFCGSESD LARGRPAPAT DCDQICFGHP GQLCGGDGRL GIYEGEEWAG 251 300 ENSBTAP00000054698/1-455 ---------- ---------- -------GTN GLIRTGWTGP EEGTNLAELG ENSP00000304422/1-462 ---------- ---------- -------VSV GSCQGNWTAP QGVIYSPDFP ENSTTRP00000015740/1-460 ---------- ---------- -------VSV G-CQGNWTAP QGVIYSPDFP bmy_02741T0/1-426 MRGS------ ---------- -------VSV GSCQGNWTAP QGVIYSPDFP BACU009187/1-680 MRGSDDGKSL SETQRCRDRG RDLGREGVSV GSCQGNWTAP QGVIYSPDFP 301 350 ENSBTAP00000054698/1-455 MEEGPAKPIR AKREKPRASL RKLQPVMRVG QLEEAEGKLQ -RGARRGQHP ENSP00000304422/1-462 DEYGPDRNCS WALGPPGAA- --LELTFRLF ELADPRDRLE LRDAASGSLL ENSTTRP00000015740/1-460 DEYGPDRNCS WALGPPGAA- --LELTFRLF ELADQRDQLE LRDAASGSLL bmy_02741T0/1-426 DEYGPDRNCS WALGPPGAA- --LELTFRLF ELADPRDQLE LRDAASGSLL BACU009187/1-680 DEYGPDRNCS WALGPPGAA- --LELTFRLF ELADPRDQLE LRDAASGSLL 351 400 ENSBTAP00000054698/1-455 ATVRPLSPPP PPRPRLGSSA ---------- -PPAGLTPLS SGLQDADADP ENSP00000304422/1-462 RAFDGARPPP SGPLRLGTAA LLLTFRSDAR GHAQGFALTY RGLQDAAEDP ENSTTRP00000015740/1-460 RAFDGARPPP PGPLRLRSVA LLLTFRSDAR GHAQGFALTY RGLQDADD-P bmy_02741T0/1-426 RAFDGARPPP PGPLRLRFAA LLLTFRSDAR GHAQGFALTY RGLQDADD-T BACU009187/1-680 RAFDGARPPP PGPLRLRSAA LLLTFRSDAR GHAQGFALTY RGLQDADD-P 401 450 ENSBTAP00000054698/1-455 APLEGSTQTP AVPLDGANVS CSPGPGGPEA SMGAQVFSTV TAVSV-LLLL ENSP00000304422/1-462 EAPEGSAQTP AAPLDGANVS CSPRPGAPPA AIGARVFSTV TAVSV-LLLL ENSTTRP00000015740/1-460 APPKGSAQTP AGPPDGANVS CSPRPGTPEA AIGAQVFLTV TAVSV-LLLL bmy_02741T0/1-426 APPKGSAQTP AGPPDGANVS CSPRPGAPEA AMGAQVFLTV TAVSVLLLLL BACU009187/1-680 APPKGSAQTP AEPPDGANVS CSPRPGAPEA AMGAQVFLTV TTVSV-LLLL 451 500 ENSBTAP00000054698/1-455 VLSLLRLLRG RGCLLAPGKG SPTLGPSRDP TRSWAV---- -WYRRPRGVA ENSP00000304422/1-462 LLGLLRPLRR RSCLLAPGKG PPALGASRGP RRSWAV---- -WYQQPRGVA ENSTTRP00000015740/1-460 LLSLLRLLRG RSCLLAPGKG PPALGPSRDP ARSWAV---- -WYRRPRGVA bmy_02741T0/1-426 LLSLLRLLRG RCAL------ ---------- ---------- -W-------- BACU009187/1-680 LLSLLRLLRG RSCLLAPGLA LLGFLVLLPM TLPWGQLGKD GWLWGTHCVA 501 550 ENSBTAP00000054698/1-455 LPCPP----- ---------G DP-------- ---------- ---------- ENSP00000304422/1-462 LPCSP----- ---------G DP-------- ---------- ---------- ENSTTRP00000015740/1-460 LPCPP----- ---------G DP-------- ---------- ---------- bmy_02741T0/1-426 ---------- ---------G RT-------- ---------- ---------- BACU009187/1-680 CLAPPAGSVL YHLFMCHKGG SPVYTRLLAL DMCGVCLVNT LGALPIIHCT 551 600 ENSBTAP00000054698/1-455 ---------- -----QVEGL TASYRPLSAS SQS------- ---------- ENSP00000304422/1-462 ---------- -----QAEGS AAGYRPLSAS SQS------- ---------- ENSTTRP00000015740/1-460 ---------- -----QVESL TASYRPLSAS SQS------- ---------- bmy_02741T0/1-426 ---------- ---------- ---------- ---------- ---------- BACU009187/1-680 LACRPWLRPA ALVAYTVLSG VAGWRALTAP STSTRLRAFG WQAGARLLMF 601 650 ENSBTAP00000054698/1-455 ---------- ---SLR---- ----SLISAL ---------- ---------- ENSP00000304422/1-462 ---------- ---SLR---- ----SLISAL ---------- ---------- ENSTTRP00000015740/1-460 ---------- ---SLR---- ----SLISAL ---------- ---------- bmy_02741T0/1-426 ---------- ---------- ---------- ---------- ---------- BACU009187/1-680 GARGVGLGSG APGSLRCYLR MDALALLGGL VNVARLPERW GPGRFDYWGN 651 700 ENSBTAP00000054698/1-455 ---------- ---------- ---------- ----- ENSP00000304422/1-462 ---------- ---------- ---------- ----- ENSTTRP00000015740/1-460 ---------- ---------- ---------- ----- bmy_02741T0/1-426 ---------- ---------- ---------- ----- BACU009187/1-680 SHQIMHLLSV GSILQLHAGV VPDLLWAARH ICPPD