KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 18:24:46 2014  Check: 00 ..

 Name: ENSP00000301411/1-210     Len:    221  Check:  152  Weight:  1.00
 Name: ENSBTAP00000054706/1-221  Len:    221  Check:  4687  Weight:  1.00
 Name: ENSTTRP00000001184/1-210  Len:    221  Check:  1201  Weight:  1.00
 Name: bmy_06399T0/1-189         Len:    221  Check:  1761  Weight:  1.00
 Name: BACU002202/1-210          Len:    221  Check:  950  Weight:  1.00

//


                          1                                                   50
ENSP00000301411/1-210     ---------- -MLPLPSCSL PILLLFLLPS VPIESQPPPS TLPPFLAPEW 
ENSBTAP00000054706/1-221  RQNGNSRVLS EMLPHPSGSL PILLLFLLPS VPMEPHPPPS PLPPFPAPEW 
ENSTTRP00000001184/1-210  ---------- -MLPHPSGSL PILLLFLLPS VPMEPHASPS PLPPFPVPEW 
bmy_06399T0/1-189         ---------- ---------- ---------- --MEPHASPS PLPPFPVPEW 
BACU002202/1-210          ---------- -MLPNPSGSL PILLLFLLPS VAMEPHASPS PLPPFPVPEW 


                          51                                                 100
ENSP00000301411/1-210     DLLSPRVVLS RGAPAGPPLL FLLEAGAFRE SAGAPANRSR RGVSETAPAS 
ENSBTAP00000054706/1-221  DLLSPRVALS RGTPTGPPLL FLLESGAFGE PVGSPANRSR RGVSETAPAS 
ENSTTRP00000001184/1-210  DLLSPRVALS RGTPAGPPLL FLLEAGAFGE PTGSPANRSR RGVSATAPAS 
bmy_06399T0/1-189         DLLSPRVALS RGTPAGPPLL FLLEAGAFGE PAGSPANRSR RGVSETAPAS 
BACU002202/1-210          DLLSPRVALS RGTPAGPPLL FLLEAGAFGE PAGSPANRSR RGVSETAPAS 


                          101                                                150
ENSP00000301411/1-210     RRGELAVCDA VSGWVTDRRT AVDLRGREVE VLGEVPAAGG SPLRQYFFET 
ENSBTAP00000054706/1-221  RRGELAVCDA VSGWVTDRRT AVDLRGREVE VLGEVPAAGG SPLRQYFFET 
ENSTTRP00000001184/1-210  RRGELAVCDA VSGWVTDRRT AVDLRGREVE VLGEVPAAGG SPLRQYFFET 
bmy_06399T0/1-189         RRGELAVCDA VSGWVTDRRT AVDLRGREVE VLGEVPAAGG SPLRQYFFET 
BACU002202/1-210          RRGELAVCDA VSGWVTDRRT AVDLRGREVE VLGEVPAAGG SPLRQYFFET 


                          151                                                200
ENSP00000301411/1-210     RCKADNAEEG GPGAGGGGCR GVDRRHWVSE CKAKQSYVRA LTADAQGRVG 
ENSBTAP00000054706/1-221  RCKAASAGEG GPGGGGGGCR GVDRRHWVSE CKAKQSYVRA LTTDAQGRVG 
ENSTTRP00000001184/1-210  RCKADSAGEG GPGGGGGGCR GVDRRHWVSE CKAKQSYVRA LTTDAQGRVG 
bmy_06399T0/1-189         RCKADSAGEG GPGGGGGGCR GVDRRHWVSE CKAKQSYVRA LTTDAQGRVG 
BACU002202/1-210          RCKADSAGEG GPGGGGGGCR GVDRRHWVSE CKAKQSYVRA LTTDAQGRVG 


                          201                                                250
ENSP00000301411/1-210     WRWIRIDTAC VCTLLSRTGR A 
ENSBTAP00000054706/1-221  WRWIRIDTAC VCTLLSRTGR A 
ENSTTRP00000001184/1-210  WRWIRIDTAC VCTLLSRNGR A 
bmy_06399T0/1-189         WRWIRIDTAC VCTLLSRTGR A 
BACU002202/1-210          WRWIRIDTAC VCTLLSRTGR A