KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:48 2014 Check: 00 .. Name: ENSP00000417132/1-729 Len: 729 Check: 4871 Weight: 1.00 Name: ENSTTRP00000001135/1-729 Len: 729 Check: 1196 Weight: 1.00 Name: ENSBTAP00000054730/1-664 Len: 729 Check: 2935 Weight: 1.00 Name: bmy_11559T0/1-729 Len: 729 Check: 7777 Weight: 1.00 Name: BACU005560/1-729 Len: 729 Check: 7471 Weight: 1.00 // 1 50 ENSP00000417132/1-729 MNKGWLELES DPGLFTLLVE DFGVKGVQVE EIYDLQSKCQ GPVYGFIFLF ENSTTRP00000001135/1-729 MNKGWLELES DPGLFTLLVE DFGVKGVQVE EIYDLQSKCQ GPVYGFIFLF ENSBTAP00000054730/1-664 MNKGWLELES DPGLFTLLVE DFGVKGVQVE EIYDLQSKCQ GPVYGFIFLF bmy_11559T0/1-729 MNKGWLELES DPGLFTLLVE DFGVKGVQVE EIYDLQSKCQ GPVYGFIFLF BACU005560/1-729 MNKGWLELES DPGLFTLLVE DFGVKGVQVE EIYDLQSKCQ GPVYGFIFLF 51 100 ENSP00000417132/1-729 KWIEERRSRR KVSTLVDDTS VIDDDIVNNM FFAHQLIPNS CATHALLSVL ENSTTRP00000001135/1-729 KWIEERRSRR KVSTLVDDTS VIDDDIVNNM FFAHQLIPNS CATHALLSVL ENSBTAP00000054730/1-664 KWIEERRSRR KVSTLVDDTS VIDDDIVNNM FFAHQLIPNS CATHALLSVL bmy_11559T0/1-729 KWIEERRSRR KVSTLVDDTS VIDDDIVNNM FFAHQLIPNS CATHALLSVL BACU005560/1-729 KWIEERRSRR KVSTLVDDTS VIDDDIVNNM FFAHQLIPNS CATHALLSVL 101 150 ENSP00000417132/1-729 LNCSSVDLGP TLSRMKDFTK GFSPESKGYA IGNAPELAKA HNSHARPEPR ENSTTRP00000001135/1-729 LNCSNVDLGP TLSRMKDFTK GFSPESKGYA IGNAPELAKA HNSHARPEPR ENSBTAP00000054730/1-664 LNCSNVDLGP TLSRMKDFTK GFSPESKGYA IGNAPELAKA HNSHARPEPR bmy_11559T0/1-729 LNCSNVDLGP TLSRMKDFTK GFSPESKGYA IGNAPELAKA HNSHARPEPR BACU005560/1-729 LNCSNVDLGP TLSRMKDFTK GFSPESKGYA IGNAPELAKA HNSHARPEPR 151 200 ENSP00000417132/1-729 HLPEKQNGLS AVRTMEAFHF VSYVPITGRL FELDGLKVYP IDHGPWGEDE ENSTTRP00000001135/1-729 HLPEKQNGLS AVRTMEAFHF VSYVPITGRL FELDGLKVYP IDHGPWGEDE ENSBTAP00000054730/1-664 HLPEKQNGLS AVRTMEAFHF VSYVPITGRL FELDGLKVYP IDHGPWGEDE bmy_11559T0/1-729 HLPEKQNGLS AVRTMEAFHF VSYVPITGRL FELDGLKVYP IDHGPWGEDE BACU005560/1-729 HLPEKQNGLS AVRTMEAFHF VSYVPITGRL FELDGLKVYP IDHGPWGEDE 201 250 ENSP00000417132/1-729 EWTDKARRVI MERIGLATAG EPYHDIRFNL MAVVPDRRIK YEARLHVLKV ENSTTRP00000001135/1-729 EWTDKARRVI MERIGLATAG EPYHDIRFNL MAVVPDRRIK YEARLHVLKV ENSBTAP00000054730/1-664 EWTDKARRVI MERIGLATAG ---------- --------IK YEARLHVLKV bmy_11559T0/1-729 EWTDKARRVI MERIGLATAG EPYHDIRFNL MAVVPDRRIK YEARLHVLKV BACU005560/1-729 EWTDKARRVI MERIGLATAG EPYHDIRFNL MAVVPDRRIK YEARLHVLKV 251 300 ENSP00000417132/1-729 NRQTVLEALQ QLIRVTQPEL IQTHKSQESQ LPEESKSASN KSPLVLEANR ENSTTRP00000001135/1-729 NRQTVLEALQ QLIRVTQPEL IQTHKSQESQ LPEETKAVSS KSPLALEASR ENSBTAP00000054730/1-664 NRQTVLEALQ QLIRVTQPEL IQTHKSQESQ LPEESKPASS KSPLALETSR bmy_11559T0/1-729 NRQTVLEALQ QLIRVTQPEL IQTHKSQESQ LPEETKPVCS KSPLALETSR BACU005560/1-729 NRQTVLEALQ QLIRVTQPEL IQTHKSQESQ LPEETKPVCS KSPLALETSR 301 350 ENSP00000417132/1-729 APAASEGNHT DGAEEAAGSC AQAPSHSPPN KPKLVVKPPG SSLNGVHPNP ENSTTRP00000001135/1-729 APAASEGTHT DGVEEVAGSC PQAPTHSPPS KPKLVVKPPG SSINGVPPNP ENSBTAP00000054730/1-664 APVASESTHT DGVEEVAGSC PQAPTHSPPS KPKLVVKPPG SNINGVPPNP bmy_11559T0/1-729 APAASEGTHT DGAEEVAGSC PQAPTHSPPS KPKLVVKPPG SSINGVPPNP BACU005560/1-729 APVASEGTHT DGAEEVAGSC PQAPTHSPPS KPKLVVKPPG SSINGVPPNP 351 400 ENSP00000417132/1-729 TPIVQRLPAF LDNHNYAKSP MQEEEDLAAG VGRSRVPVRP PQQYSDDEDD ENSTTRP00000001135/1-729 TPIVQRLPAF LDNHNYAKSP MQEEEDLAAG VGRSRVPVRP PQQYSDDEDD ENSBTAP00000054730/1-664 TPIVQRLPAF LDNHNYAKSP MQEEEDLAAG VGRSRVPVRP PQQYSDDEDD bmy_11559T0/1-729 TPIVQRLPAF LDNHNYAKSP MQEEEDLAAG VGRSRVPVRP PQQYSDDEDD BACU005560/1-729 TPIVQRLPAF LDNHNYAKSP MQEEEDLAAG VGRSRVPVRP PQQYSDDEDD 401 450 ENSP00000417132/1-729 YEDDEEDDVQ NTNSALRYKG KGTGKPGALS GSADGQLSVL QPNTINVLAE ENSTTRP00000001135/1-729 YEDDEEDDVQ NTNSAIRYKR KGPGKPGPLS GSGDGQLSVL QPNTINVLAE ENSBTAP00000054730/1-664 YEDEEEDDAQ STSSAIRYKR KGPGKPGPLS SSGDGQLSVL QPNTINVLAE bmy_11559T0/1-729 YEDDEEDDVQ NTNSAIRYKR KGPGKPGPLS GSGDGQLSVL QPNTINVLAE BACU005560/1-729 YEDDEEDDVQ NTNSAIRYKR KGPGKPGPLS GSGDGQLSVL QPNTINVLAE 451 500 ENSP00000417132/1-729 KLKESQKDLS IPLSIKTSSG AGSPAVAVPT HSQPSPTPSN ESTDTASEIG ENSTTRP00000001135/1-729 KLKESQKDLS IPLSIKTSSG AGSPAVAVPT HSQPSPTPSN ESTDTASEIG ENSBTAP00000054730/1-664 KLKESQKDLS IPLSIKTSSG AGSPAVAVPT HSQPSPTPSN ESTDTASEIG bmy_11559T0/1-729 KLKESQKDLS IPLSIKTSSG AGSPAVAVPT HSQPSPTPSN ESTDTASEIG BACU005560/1-729 KLKESQKDLS IPLSIKTSSG AGSPAVAVPT HSQPSPTPSN ESTDTASEIG 501 550 ENSP00000417132/1-729 SAFNSPLRSP IRSANPTRPS SPVTSHISKV LFGEDDSLLR VDCIRYNRAV ENSTTRP00000001135/1-729 SAFNSPLRSP IRSANPTRPS SPVTSHISKV LFGEDDSLLR VDCIRYNRAV ENSBTAP00000054730/1-664 SAFNSPLRSP IRSANPTRPS SPVTSHIS-V LFGEDDSLLR VDCIRYNRAV bmy_11559T0/1-729 SAFNSPLRSP IRSANPTRPS SPVTSHISKV LFGEDDSLLR VDCIRYNRAV BACU005560/1-729 SAFNSPLRSP IRSANPTRPS SPVTSHISKV LFGEDDSLLR VDCIRYNRAV 551 600 ENSP00000417132/1-729 RDLGPVISTG LLHLAEDGVL SPLALTEGGK GSSPSIRPIQ GSQGSSSPVE ENSTTRP00000001135/1-729 RDLGPVISTG LLHLAEDGVL SPLALTESGK GSSPSIRPSQ GSQGSGSPEE ENSBTAP00000054730/1-664 RDL---VLTG LLHLAEDGVL SPLALTESGK GSSPSIRPSQ GSQGSGSPEE bmy_11559T0/1-729 RDLGPVISTG LLHLAEDGVL SPLALTESGK GSSPSIRPSQ GSQGSGSPEE BACU005560/1-729 RDLGPVISTG LLHLAEDGVL SPLALTESGK GSSPSIRPSQ GSQGSGSPEE 601 650 ENSP00000417132/1-729 KEVVEATDSR EKTGMVRPGE PLSGEKYSPK ELLALLKCVE AEIANYEACL ENSTTRP00000001135/1-729 KEVVEAVDSR EKPGLVRPSE PLSGEKYSPK ELLALLKCVE AEXXXXXXXX ENSBTAP00000054730/1-664 KEVVEAVDSR EKPGLVRPSE SLNGEKYSPK ELLALLKCVE AEIANYEACL bmy_11559T0/1-729 KEVVETVDSR EKPGLVRPSE PLSGEKYSPK ELLALLKCVE AEIANYEACL BACU005560/1-729 KEVVEAVDSR EKPGLVRPSE PLSGEKYSPK ELLALLKCVE AEIANYEACL 651 700 ENSP00000417132/1-729 KEEVEKRKKF KIDDQRRTHN YDEFICTFIS MLAQEGMLAN LVEQNISVRR ENSTTRP00000001135/1-729 XXXXEKRKKF KIDDQRRTHN YDEFICTFIS MLAQEGMLAN LVEQNISVRR ENSBTAP00000054730/1-664 KEEVEKRKKF KIDDQRRTHN YDEFICTFIS MLAQEG---- ---------- bmy_11559T0/1-729 KEEVEKRKKF KIDDQRRTHN YDEFICTFIS MLAQEGMLAN LVEQNISVRR BACU005560/1-729 KEEVEKRKKF KIDDQRRTHN YDEFICTFIS MLAQEGMLAN LVEQNISVRR 701 750 ENSP00000417132/1-729 RQGVSIGRLH KQRKPDRRKR SRPYKAKRQ ENSTTRP00000001135/1-729 RQGVSIGRLH KQRKPDRRKR SRPYKAKRQ ENSBTAP00000054730/1-664 ---------- ---------- --------- bmy_11559T0/1-729 RQGVSIGRLH KQRKPDRRKR SRPYKAKRQ BACU005560/1-729 RQGVSIGRLH KQRKPDRRKR SRPYKAKRQ