KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:49 2014 Check: 00 .. Name: ENSP00000247815/1-1087 Len: 1091 Check: 2626 Weight: 1.00 Name: ENSBTAP00000054741/1-1077 Len: 1091 Check: 7704 Weight: 1.00 Name: ENSTTRP00000008608/1-1045 Len: 1091 Check: 3704 Weight: 1.00 Name: bmy_06814T0/1-1060 Len: 1091 Check: 9745 Weight: 1.00 Name: BACU008199/1-1030 Len: 1091 Check: 6658 Weight: 1.00 // 1 50 ENSP00000247815/1-1087 MARSSPYLRQ LQGPLLPPRD LVEEDDDYLN DDVEEDEESV FIDAEEL-CS ENSBTAP00000054741/1-1077 MASSSQPLLE LQGPLLPPKD LVEEEDEYLR EDAEEDEDTV FLDAEEL-CS ENSTTRP00000008608/1-1045 MASLSQPLRE LQGPLLPPKD LVEEEXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06814T0/1-1060 MASLSQALRE LQGPLLPPKD LVEEEDDYLR GDAEEEEDTV FVDAEEL-CS BACU008199/1-1030 MASLSQALRE LQGPLLPPKD LLEDEDDYLR GDAEEEEDTV FVDAEEL-CS 51 100 ENSP00000247815/1-1087 GGVKAGSLPG CLRVSICDEN TQETCKVFGR FPITGAWWRV KVQVKPVVGS ENSBTAP00000054741/1-1077 GGVNAGSLPG LLRVSVFDEN TQQKCDVLGR FPLTDAWWRV KVQVKP-VGS ENSTTRP00000008608/1-1045 XXXXXXXXXX XXXXSIFDEN TQQQCEVFGR FPLMGAWWRV KVQVKP-VGS bmy_06814T0/1-1060 GGVKAGSLPG RLR------- ------VFGR FPLMGPWWRV KVQVQP-VGS BACU008199/1-1030 GGVKAGGLPG RLRVSIFDEN THQQCEVFGR FPLMGPWWRV KVQVQP-VGS 101 150 ENSP00000247815/1-1087 RSYQYQVQGF PSYFLQSDMS PPNQKHICAL FLKECEVSSD DVNKFLTWVK ENSBTAP00000054741/1-1077 GS--YQVQGF PSYFLQSDMS PPNQIHICSL FLKECSVSSE QRIKFFTWLN ENSTTRP00000008608/1-1045 RS--FQVQGF PSYFLQSDMA APNQLHICSL FLKDCNVSSE KRKKFLAWVN bmy_06814T0/1-1060 RS--YQVQGF PSYFLQSDMS APNQLHICSL FLKDCNVPSE NRNKFLTWVN BACU008199/1-1030 RS--YQVQGF PSYFLQSDMS APNQLHICSL FLKDCNVPSE NRNKFLAWVN 151 200 ENSP00000247815/1-1087 EVSNYKNLNF ENLRETLRTF HKETGRKDQK QPTQNGQEEL FLDNEMSLPL ENSBTAP00000054741/1-1077 NKSRYKDLNF ENLMENLRTW QEEIEGNSQK QSTQKTQ-ES PPDREMPLPL ENSTTRP00000008608/1-1045 AESSYKDLNF ENLREKLRTY QKNIGRNTQK QSTRKTQEES PPDDEILRSL bmy_06814T0/1-1060 DESSYKDLNF ENLREKLRTY QKNIGRNTQK QSTQKTQEES PPDYEILLPL BACU008199/1-1030 DESSYKDLNF ENLREKLRTY QKNIERNTQK QSTQKTQEES PPDYEILLPL 201 250 ENSP00000247815/1-1087 ENTIPFRNVM TALQFPKIME FLPVLLPRHF KWIIGSGSKE MLKEIEEILG ENSBTAP00000054741/1-1077 EFTFPFITVM RALQFPKIME FLPVLLPRHF KQLITSNSIE VLEEIEEILG ENSTTRP00000008608/1-1045 ENTIPFITVM RALQFPKIME FLPVLLPRHF KRLISSDSTQ VLEAIEEILG bmy_06814T0/1-1060 ENTIPYITVM RALQFPKIME FLPVLLPRHF KRLISSDSAE VLEQIEEILG BACU008199/1-1030 ENTIPYITVM RALQFPKIME FLPVLLPRHF KRLISSDSAE VLEEIEEILR 251 300 ENSP00000247815/1-1087 THPWKLGFSK ITYREWKLLR CEASWIAFCQ CESLLQLMTD LEKNALIMYS ENSBTAP00000054741/1-1077 TQPWKLGFRK ITYRELKLLR CEANWTSFRQ CKSLFQLMTD LEKNALIIYS ENSTTRP00000008608/1-1045 TQPWKLGFRK ITYRQLKLLQ CEASWTSFCQ CRSLLQLMTD LEKNALVIYS bmy_06814T0/1-1060 TQPWKLGFRK ITYRQLKLLQ CEASWTSFCQ CRSLLQLMTD LEKNALVIYS BACU008199/1-1030 TQPWKLGFRK ITYRQLKLLQ CEASWTSFCQ CRSLLQLMTD LEKNALVIYS 301 350 ENSP00000247815/1-1087 RLKQICREDG HTYVEVNDLT LTLSNHMSFH AASESLKFLK DIGVVTYEKS ENSBTAP00000054741/1-1077 HLKQICREQG HTCVEEADLT FQLSDLMSFH DAWQSLKFLK DIGVVTYEKG ENSTTRP00000008608/1-1045 ELKRMCREQG HTCVEEADLT SELSDRMSFH DAWQSLKFLK DIGVVTYEKG bmy_06814T0/1-1060 ELKQMCREQG HTCVEEADLT SELSDRMSFH DAWQSLKFLK DIGXVTYEKG BACU008199/1-1030 ELKQMCRQQG HTCVEEADLT SELSDRMSFH DAWQSLKFLK DIGVVTYEKG 351 400 ENSP00000247815/1-1087 CVFPYDLYHA ERAIAFSICD LMKKPPWHLC VDVEKVLASI HTTKPENS-S ENSBTAP00000054741/1-1077 CVFLYDLYQA ERGIASSVCD LMTRPPWQLQ VDVKKVLASI CTTRPENSGS ENSTTRP00000008608/1-1045 CVFLYDLYQA ERGIASSICD LMTRSPWRLH VDVKKVLASI HTTRPENSES bmy_06814T0/1-1060 CVFLYDLYQA ERGIASSICD LMTRSPWRLX VDVKKVLASI HTTGPENSGS BACU008199/1-1030 CVFLYDLYQA ERGIASSICD LMTRSPWRLH VDVKKVLASI HTTGPENSGS 401 450 ENSP00000247815/1-1087 DDALNESKPD EVRLENPVDV VDTQDNGDHI WTNGENEINA EISEVQLDQD ENSBTAP00000054741/1-1077 GDTLNKSKPD EIRLEDLVDI LDTQDSSDHI WDDGEKEVNA EMSEGQLDQ- ENSTTRP00000008608/1-1045 DDTLNKSEPD ETRLEDPVDI WDMQDSGDHI WDNGESEVKA EISEVQLDQ- bmy_06814T0/1-1060 DDTLNKSKPD ETRLEDPVDI WDTQDSGDHI LDNGENEVKA EISEVQLDQ- BACU008199/1-1030 DATLNNSKPD ETRLEDPVDI WDTQDSGDHI LDNGENEVKA EISEVQLDQ- 451 500 ENSP00000247815/1-1087 QVEVPLDRDQ VAALEMICSN PVTVISGKGG CGKTTIVSRL FKHIEQLEER ENSBTAP00000054741/1-1077 --------DQ MTALDMICSN AVTVISGKGG CGKTTIVSQL FKHIELLEEK ENSTTRP00000008608/1-1045 --------DQ VAALDMICSN AVTVISGKGG SGKTTIVSQL FKHIELLEER bmy_06814T0/1-1060 --------DQ VAALDMICSN AVTVISGKGG SGKTTIVSQL FKHIELLEER BACU008199/1-1030 --------DQ VAALDMICSN AVTVISGKGG SGKTTIVSQL FKHIELLEER 501 550 ENSP00000247815/1-1087 EVKKACEDFE QDQNASEEWI TFTEQSQLEA DKAIEVLLTA PTGKAAGLLR ENSBTAP00000054741/1-1077 EVKKACEDFE QDWNVPEEWI TFAEQSQQEL DKAIEVLLTA PTGKAAGLLR ENSTTRP00000008608/1-1045 EVKKACEDFE QDQNVPEEWI TFTEQSQPKP GKAIEVLLTA PTGKAAGLLR bmy_06814T0/1-1060 EVKKACEDFE QDQNVPEEWI TFTQQSQPKP GKAIEVLLTA PTGKAAGLLR BACU008199/1-1030 EVKNACEDFE QDQNVPEEWI TFTQQSQLKP GKAIEVLLTA PTGKAAGLLR 551 600 ENSP00000247815/1-1087 QKTGLHAYTL CQVNYSFYSW TQTMMTTNKP WKFSSVRVLV VDEGSLVSVG ENSBTAP00000054741/1-1077 QKTGFNAYTL CQVNYSFYLW KEKKKTKNRP WKFSSVRVLV VDEGSLVSVA ENSTTRP00000008608/1-1045 QKTGFSAYTL CQVNYSFYLW ETKTMTKDMP WKFSSVRVLV VDEGSLVSVG bmy_06814T0/1-1060 QKTGFNAYTL CQVNYSFYLW EKKTMTKDMP WKFSSVRVLV VDEGSLVSVR BACU008199/1-1030 QKTGFNAYTL CQVNYSFYLW EKKTRTKDMP WKFSSVRVLV VDEGSLVSVR 601 650 ENSP00000247815/1-1087 IFKSVLNLLC EHSKLSKLII LGDIRQLPSI EPGNLLKDLF ETLKSRNCAI ENSBTAP00000054741/1-1077 IFKSVLNLLC EHSKLSKLII LGDVRQLPSI EPGNLLKDLF ETLKSRNCAI ENSTTRP00000008608/1-1045 IFKSVLNLLC EHSQLSKLII LGDIRQLPSI EPGNLLKDLF ETLKSRNCAI bmy_06814T0/1-1060 IFKSVLNLLC EHSQLSKLII LGDIRQLPSI EPGNLLKDLF ETLKSRNCAV BACU008199/1-1030 IFKSVLNLLC EHSQLSKLIV LGDIRQLPSI EPGNLLKDLF ETLKSRNCAV 651 700 ENSP00000247815/1-1087 ELKTNHRAES QLIVDNATRI SRRQFPKFDA ELNISDNPTL PISIQDKTFI ENSBTAP00000054741/1-1077 ELKTNHRAES ELIVDNATRI SRRQFPTFDA ELNISDNLTF PVSVQDKSFI ENSTTRP00000008608/1-1045 ELKTNHRAES ELIVDNATRI SRRQFPTFDA ELNISDDPTF PVSIQDKSFI bmy_06814T0/1-1060 ELKTNHRAES ELIVDNATRI SRRQFPTFDA ELNISDDPTF PVSIQDKSFI BACU008199/1-1030 ELKTNHRAES ELIVDNATRI SRRQFPTFDA ELNISDDPTL PVSIQDKSFI 701 750 ENSP00000247815/1-1087 FVRLPEEDAS SQSSKTNHHS CLYSAVKTLL QENNLQNAKT SQFIAFRRQD ENSBTAP00000054741/1-1077 FVRLPEEDAS SQSSKSDHQS YLYSAVSTLL KEKDLEDVKT SQFIAFRRQD ENSTTRP00000008608/1-1045 FVRLPEEDAS SQFSKSNHHS YLYSAVSTLL KEKDLEDAKT SQFIAFRRQD bmy_06814T0/1-1060 FVRLPEEDAS SQFSKN---- -LYSAVSTLL KEKDLEDAKT SQFIAFRRQD BACU008199/1-1030 FVRLPEEDAS SQFSKSNHHS YLYSAVSTLL KEKDLQDAKT SQFIAFRRQD 751 800 ENSP00000247815/1-1087 CDLINDCCCK HYTGHLTKDH QSRLVFGIGD KICCTRNAYL SDLLPENISG ENSBTAP00000054741/1-1077 CDVINACCCK HYTGHLIKNH QNRLEFGVGD KICCTKNAYL SELLPENTFN ENSTTRP00000008608/1-1045 CDVINTCCCK HYTGRLIKNH QNRLEFGVGD KICCTRNAYL SDLLPENTFN bmy_06814T0/1-1060 CDVINTCCCK HYTGRLIKNH QNRLEFGVGD KICCTRNAYL SDLLPENTFN BACU008199/1-1030 CDVINTCCCK HYTGRLIKNH QNRLEFGVGD KICCTRNAYL SDLLPENTFN 801 850 ENSP00000247815/1-1087 SQQNNDLDAS SEDFSGTLPD FAKNKRDFES NVRLCNGEIF FITNDVTDVT ENSBTAP00000054741/1-1077 SQRNNELKAS GKDFNGGTPG FAKNKHDFES GTRLCNGEIF FITADKTDVT ENSTTRP00000008608/1-1045 SQQNNELKAG GEDFNGTPHG FAKNKHDFES GIRLCNGEVF FITEDKTDIT bmy_06814T0/1-1060 SQQNNELKAS GEDFNGTPHG FAKNKHDFES GIRLCNGEVF FITEDKTDIT BACU008199/1-1030 SQQNNELKAS GEDFNGTPHG FAKNKHDFES GIRLCNGEVF FITE------ 851 900 ENSP00000247815/1-1087 FGKRRSLTIN NMAGLEVTVD FKKLMKYCRI KHAWARTIHT FQGSEEQTVV ENSBTAP00000054741/1-1077 VGKKRFLTIN NMAGLEVTVD FGKLMQYCHI KHAWARTIHT FQGSEEKTVV ENSTTRP00000008608/1-1045 FGKKRFLTIN NMAGFEVTVD FGKLMQYCNI KHAWARTIHT FQGSEEKTVV bmy_06814T0/1-1060 FGKQRFLTIN NMAGFEXTVD FGKLMQYCHI KHAWARTIHT FQGSEEKTVV BACU008199/1-1030 ---------- ---------- ---------- ---------- --GSEEKTVV 901 950 ENSP00000247815/1-1087 YVVGKAGRQH WQHVYTAVTR GRCRVYVIAE ESQLRNAIMK NSFPRKTRLK ENSBTAP00000054741/1-1077 YVVGKAGRQH WQHVYTAVTR GRCRVYVIAE ESQLRSAITR KSVPRKTRLK ENSTTRP00000008608/1-1045 YVVGKAGRQH WQHVYTAVTR GRCRVYVIAE ESQLRSAIMK NSVPRKTRLK bmy_06814T0/1-1060 YVVGKAGRQH WQHVYTAVTR GRCRVYVIAE ESQLRSAIMK NSVXRKTRLK BACU008199/1-1030 YVVGKAGRQH WQHVYTAVTR GRCRVYVIAE ESQLWSAIMK NSVPRKTRLK 951 1000 ENSP00000247815/1-1087 HFLQSKLSSS GAPPADFPSP RKSSGDSGGP ST-PSASPLP VVTDHAMTND ENSBTAP00000054741/1-1077 HFLQNKLSRS CTSPAEFASS SKNLEDSRRP GTQPSASPLS TVTADTVTND ENSTTRP00000008608/1-1045 HFLQNKLSES CASPAESASP SKSSEDSRRP STRPSASPLP TATDDRVTDY bmy_06814T0/1-1060 HFLQNKLSES CASPAEFASP SKSPEDSRRP STHPSASPLP TVTDDRVTDY BACU008199/1-1030 HFLQNKLSES CASPAEFASP SKSPEDSRRP STHPSASPLP TVTDDRVTDD 1001 1050 ENSP00000247815/1-1087 VTWSEASSPD ERTLTFAERW QLSSPDGVDT DDDLPKSRAS KRTCGVNDDE ENSBTAP00000054741/1-1077 SPRSGDSVAD DMLLAFAEGW ELSSHDEVDA TEDPSQLRGS KRTCGSNDAE ENSTTRP00000008608/1-1045 VPRRRASVAD DTLFAFAEGW KLPSSDEVHT IEDPSQSRGS KRTCCLNATA bmy_06814T0/1-1060 VPRRRASVAG DTLFAFAEGW KLSSSDEVHT IEDPSQSRGS KRTCCMNATA BACU008199/1-1030 VPRRRASVAG DTLFAFAEGW KLSSSDAVHA TEDPSQSRGS KRTCCTNAAA 1051 1100 ENSP00000247815/1-1087 SPSKIFMVGE -SPQVSSRLQ NLRLNNLIPR QLFKPTDNQE T ENSBTAP00000054741/1-1077 SPSKILMVEE SSPQVSSKLQ NLRLNSLTPK QLFKSTNNQE T ENSTTRP00000008608/1-1045 SPNKILM--- ---------- ---------- ---------- - bmy_06814T0/1-1060 SPNKILMVEE SSPQVSSKLQ NLRLNSLTPR QLFKPTNNQE T BACU008199/1-1030 SPSKILMVEE SSPQVSSKLQ NLRLNSLTPR QLFKPTNNQE T