KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:56 2014 Check: 00 .. Name: ENSP00000325402/1-399 Len: 410 Check: 466 Weight: 1.00 Name: ENSBTAP00000054771/1-379 Len: 410 Check: 2864 Weight: 1.00 Name: bmy_06576T0/1-380 Len: 410 Check: 2347 Weight: 1.00 Name: ENSTTRP00000013570/1-396 Len: 410 Check: 24 Weight: 1.00 // 1 50 ENSP00000325402/1-399 ----MASAAA GEAEETTRLR KPRFSFEENQ ILIREVRAHY PQLYGAQSRR ENSBTAP00000054771/1-379 SGGAMASAAA GEAEETTRLR KPRFSFEENQ ILIREVRAHY PQLYGAQSRR bmy_06576T0/1-380 ----MASAAA GEAEETTRLR KPRFSFEENQ ILIREVRAHY PQLYGAQSRR ENSTTRP00000013570/1-396 ----MASAAA GVAVEITRLC KPRFSFEEIQ ILIREVRAHY LQLYVAQSRR 51 100 ENSP00000325402/1-399 VSVAERRRVW DGIAAKINGI TSWKRTGQEV QKRWNDFKRR TKEKLARVPH ENSBTAP00000054771/1-379 VSVAERRRVW DGIAAKINGI TSWKRTGQEV QKRWNDFKRR TKEKLARVPH bmy_06576T0/1-380 VSVAERRRVW DGIAAKINGI TSWKRTGQEV QKRWNDFKRR TKEKLARVPH ENSTTRP00000013570/1-396 VSVAERRRVW EGIAAKINGI TSWKRTGQEV QKRWNDFKRR TKEKLARVPH 101 150 ENSP00000325402/1-399 STQGAGPAAE DAFSAEEETI FAILGPGVAA PGAGAGAEEP PAAPSSQPPP ENSBTAP00000054771/1-379 STQGAGPAAE DAFSAEEETI FAILGPGVAG SGASAGAEQP PAAASSQPPA bmy_06576T0/1-380 STQGTGPAAE DAFSAEEETI FAILGPGVAG PGAGAGAEQP SAAASSQPPA ENSTTRP00000013570/1-396 STQGTGPAAE DAFSAEEETI FAILGPGVAG PGAGAGAEQP SAAASSQPPA 151 200 ENSP00000325402/1-399 PSACPQRYVL SEDRREDRRA DTSAHSKAGS SSPEPWARPS CTPQEGGCPR ENSBTAP00000054771/1-379 PSACAQRYVL SEDRREDRRA DTPAHSKGGS SSPEPWARAS CNPQEGGCQP bmy_06576T0/1-380 PSACAQRCVL ---------- ------KGGS SSPEPWARPS CNPQEGGCQA ENSTTRP00000013570/1-396 PSACAQRCVL SEDRKEDRRA DTPAHSKGGS SSPEPWARPS CNPQEGGCPA 201 250 ENSP00000325402/1-399 PKERESPPPS ALQPVQLPRL ALSPPPPA-- --PPLPP--- PPPLAQVAPS ENSBTAP00000054771/1-379 PKERESSPPP ALQTVQLPRL ALSPPPPAPP PPPPPPPPPQ PPQQAQVALS bmy_06576T0/1-380 PKERESPPPP ALQTIQLPRL ALSPPPPA-- --PPLPPPPE PPQQVQVAPS ENSTTRP00000013570/1-396 PKERESPPPP ALQTIQLPRL ALSPPPPA-- --PPLPPPPE PPQQVQVAPS 251 300 ENSP00000325402/1-399 PPSPPPPPRP PPTLSASDPS LDFLRAQQET ANAIRELAGT LRQGLAKLSE ENSBTAP00000054771/1-379 PPSPPPPPLP PP--SAPDPS LDFLRAQQET ANAIRELAGT LRQGLAKLSE bmy_06576T0/1-380 PSSSPSPPLP PP--SAPDPS LDFLRAQQET ANAIRELAGT LRQGLAQLSE ENSTTRP00000013570/1-396 PSSSPSPPLP PP--SAPDPS LDFLRAQQET ANAIRELAGT LRQGLAQLSE 301 350 ENSP00000325402/1-399 ALSALLPLLP GTPVDSLPPP LPPPPPPPPP PRPVLPPPAP KVEITPEPVS ENSBTAP00000054771/1-379 ALSALLPLLP GTPADPLPPP LP--PPPPPP PRPILPPPSP KVEVTPEPVS bmy_06576T0/1-380 ALSALLPLLP GSPADPLPPP ----PPPPPP PRPVLSPPSP KVEVTPEPVS ENSTTRP00000013570/1-396 ALSALLPLLP GTPADPLPPP ----PPPPPP PRPVLSPPSP KVEVTPEPVS 351 400 ENSP00000325402/1-399 VVAAVVDGAV VAARGVIIAP RSEEGAPRPP PAPLPPHDSP PHKRRKGFPT ENSBTAP00000054771/1-379 VVTAVVDGAV VAARGVIIAP RSEEGAPRPP PAP------- ---------- bmy_06576T0/1-380 VVAAVVDGAV VAARGVIIAP RSEEGAPRPP PTPLPPHDSP PHKRRKSFPT ENSTTRP00000013570/1-396 VVAAVVDGAV VAARGVIIAP RSEEGTPRAP PAPLPPHDSP PHKRRKSFPT 401 450 ENSP00000325402/1-399 RKRRGRWKSP ENSBTAP00000054771/1-379 ---------- bmy_06576T0/1-380 RKRRGRWKSP ENSTTRP00000013570/1-396 RKRRGRWKSP