KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:57 2014 Check: 00 .. Name: ENSTTRP00000004564/1-1310 Len: 1371 Check: 3946 Weight: 1.00 Name: ENSP00000344786/1-1240 Len: 1371 Check: 9381 Weight: 1.00 Name: ENSBTAP00000054775/1-1345 Len: 1371 Check: 5958 Weight: 1.00 Name: bmy_02395T0/1-975 Len: 1371 Check: 7229 Weight: 1.00 Name: BACU001105/1-1338 Len: 1371 Check: 654 Weight: 1.00 // 1 50 ENSTTRP00000004564/1-1310 ---------- ---------- ---------- --NPSRLSQP PTITKQSVKE ENSP00000344786/1-1240 MARQPPPPWV HAAFLLCLLS LGGAIEIPMD PSIQNELTQP PTITKQSAKD ENSBTAP00000054775/1-1345 -MAGQPPPWA YTAVLLCTLS LGGAIEIPMD PSIQNELSQP PTITKQSVKD bmy_02395T0/1-975 ---------- ---------- ---------- ---------- ---------- BACU001105/1-1338 MARQQPSPWV HTAFLFCLLS LSGAIEIPMD ------LSQP PTITKQSVKD 51 100 ENSTTRP00000004564/1-1310 HIVDPRDNIL IECEAKGNPA PSFHWTRNSR FFNIAKDPRV SMRRRSGTLV ENSP00000344786/1-1240 HIVDPRDNIL IECEAKGNPA PSFHWTRNSR FFNIAKDPRV SMRRRSGTLV ENSBTAP00000054775/1-1345 HIVDPRDNIL IECEAKGNPA PSFHWTRNSK FFNIAKDPRV SMRRRSGTLV bmy_02395T0/1-975 ---------- ---------- ---------- ---------- ---------- BACU001105/1-1338 HIVDPRDNIL IECEAKGNPA PSFHWTRNSR FFNIAKDPRV SMRRRSGTLV 101 150 ENSTTRP00000004564/1-1310 IDFRSGGRPE EYEGEYQCFA RNKFGTALSN RIRLQVSKSP LWPKENLDPV ENSP00000344786/1-1240 IDFRSGGRPE EYEGEYQCFA RNKFGTALSN RIRLQVSKSP LWPKENLDPV ENSBTAP00000054775/1-1345 IDFRSGGRPE EYEGEYQCFA RNKFGTALSN RIRLQVSKSP LWPKENLDPV bmy_02395T0/1-975 ---------- ---------- ---------- ---------- ---------- BACU001105/1-1338 IDFRSGGRPE EYEGEYQCFA RNKFGTALSN RIRLQVSKSP LWPKENLDPV 151 200 ENSTTRP00000004564/1-1310 VVQEGAPLTL QCNPPPGLPS PVIFWMSSSM EPITQDKRVS QGHNGDLYFS ENSP00000344786/1-1240 VVQEGAPLTL QCNPPPGLPS PVIFWMSSSM EPITQDKRVS QGHNGDLYFS ENSBTAP00000054775/1-1345 VVQEGAPLTL QCNPPPGLPS PVIFWMSSSM EPITQDKRVS QGHNGDLYFS bmy_02395T0/1-975 ---------- ---------- ---------M EPITQDKRVS QGHNGDLYFS BACU001105/1-1338 VVQEGAPLTL QCNPPPGLPS PVIFWMSSSM EPITQDKRVS QGHNGDLYFS 201 250 ENSTTRP00000004564/1-1310 NVMLQDMQTD YSCNARFHFT HTIQQKNPFN LKVLT----- ---------- ENSP00000344786/1-1240 NVMLQDMQTD YSCNARFHFT HTIQQKNPFT LKVLT----- ---------- ENSBTAP00000054775/1-1345 NVMLQDMQTD YSCNARFHFT HTIQQKNPFT LKVLT----- ---------- bmy_02395T0/1-975 NVMLQDMQTD YSCNARFHFT HTIQQKNPFN LKVLNNHPYN DSSLRNHPDM BACU001105/1-1338 NVMLQDMQTD YSCNARFHFT HTIQQKNPFN LKVLTNHPYN DSSLRNHPDM 251 300 ENSTTRP00000004564/1-1310 --TRGVAERT PSFMYPQGTA SSQMVLRGMD LLLECIASGV ---PTPDIAW ENSP00000344786/1-1240 --TRGVAERT PSFMYPQGTA SSQMVLRGMD LLLECIASGV ---PTPDIAW ENSBTAP00000054775/1-1345 --TRGVAERT PSFMYPQGTA SSQMVLRGMD LLLECIASGV ---PTPDIAW bmy_02395T0/1-975 YSARGVAERT PSFMYPQGTA SSQMVLRGMD LLLECIASGV YVHPTPDIAW BACU001105/1-1338 YSARGVAERT PSFMHPQGTA SSQMVLRGMD LLLECIASGV ---PTPDIAW 301 350 ENSTTRP00000004564/1-1310 YKKGGDLPSD KAKFENFNKA LRITNVSEED SGEYFCLASN KMGSIRHTIS ENSP00000344786/1-1240 YKKGGDLPSD KAKFENFNKA LRITNVSEED SGEYFCLASN KMGSIRHTIS ENSBTAP00000054775/1-1345 YKKGGDLPSD KAKFENFNKA LRITNVSEED SGEYFCLASN KMGSIRHTIS bmy_02395T0/1-975 YKKGGDLPSD KAKFENFNKA LRITNVSEED SGEYFCLASN KMGSIRHTIS BACU001105/1-1338 YKKGGDLPSD KAKFENFNKA LRITNVSEED SGEYFCLASN KMGSIRHTIS 351 400 ENSTTRP00000004564/1-1310 VRVKAAPYWL DEPKNLILAP GEDGRLVCRA NGNPKPTVQW MVNGEPLQSA ENSP00000344786/1-1240 VRVKAAPYWL DEPKNLILAP GEDGRLVCRA NGNPKPTVQW MVNGEPLQSA ENSBTAP00000054775/1-1345 VRVKAAPYWL DEPKNLILAP GEDGRLVCRA NGNPKPTVQW MVNGEPLQSA bmy_02395T0/1-975 VRVKAAPYWL DEPKNLILAP GEDGRLVCRA NGNPKPTVQW MVNGEPLQSA BACU001105/1-1338 VRVKAAPYWL DEPKNLILAP GEDGRLVCRA NGNPKPTVQW MVNGEPLQSA 401 450 ENSTTRP00000004564/1-1310 PPNPNREVAG DTIIFRDTQI SSRAVYQCNT SNEHGYLLAN AFVSVLDVPP ENSP00000344786/1-1240 PPNPNREVAG DTIIFRDTQI SSRAVYQCNT SNEHGYLLAN AFVSVLDVPP ENSBTAP00000054775/1-1345 PPNPNREVAG DTIIFRDTQI SSRAVYQCNT SNEHGYLLAN AFVSVLDVPP bmy_02395T0/1-975 PPNPNREVAG DTIIFRDTQI SSRAVYQCNT SNEHGYLLAN AFVSVLDVPP BACU001105/1-1338 PPNPNREVAG DTIIFRDTQI SSRAVYQCNT SNEHGYLLAN AFVSVLDVPP 451 500 ENSTTRP00000004564/1-1310 RMLSPRNQLI RVILYNRTRL DCPFFGSPIP TLRWFKNGQG SNLDGGNYHV ENSP00000344786/1-1240 RMLSPRNQLI RVILYNRTRL DCPFFGSPIP TLRWFKNGQG SNLDGGNYHV ENSBTAP00000054775/1-1345 RMLSPRNQLI RVILYNRTRL DCPFFGSPIP TLRWFKNGQG SNLDGGNYHV bmy_02395T0/1-975 RMLSPRNQLI RVILYNRTRL DCPFFGSPIP TLRWFKNGQG SNLDGGNYHV BACU001105/1-1338 RMLSPRNQLI RVILYNRTRL DCPFFGSPIP TLRWFKNGQG SNLDGGNYHV 501 550 ENSTTRP00000004564/1-1310 YENGSLEIKM IRKEDQGIYT CVATNILGKA ENQVRLEVKD PTRIYRMPED ENSP00000344786/1-1240 YENGSLEIKM IRKEDQGIYT CVATNILGKA ENQVRLEVKD PTRIYRMPED ENSBTAP00000054775/1-1345 YENGSLEIKM IRKEDQGIYT CVATNILGKA ENQVRLEVKD PTRIYRMPED bmy_02395T0/1-975 YENGSLEIKM IRKEDQGIYT CVATNILGKA ENQVRLEVKD PTRIYRMPED BACU001105/1-1338 YENGSLEIKM IRKEDQGIYT CVATNILGKA ENQVRLEVKD PTRIYRMPED 551 600 ENSTTRP00000004564/1-1310 QVAKRGTTVQ LECRVKHDPS LKLTVYWLKD DEPLYVGNXX XXXXXXXXXX ENSP00000344786/1-1240 QVARRGTTVQ LECRVKHDPS LKLTVSWLKD DEPLYIGNRM KKEDDSLTIF ENSBTAP00000054775/1-1345 QVAKRGTTVQ LECRVKHDPS LKLAVSWLKD DEPLYISNRM KKEEDSLTIF bmy_02395T0/1-975 QVAKRGTTVQ LECRVKHDPS LKLTVSWLKD DEPLYIGNRM KKEEDSLTIF BACU001105/1-1338 QVAKRGTTVQ LECRVKHDPS LKLTVSWLKD DEPLYIGNRM KKEEDSLTIF 601 650 ENSTTRP00000004564/1-1310 XXXXXXXXSY TCVASTELDQ DLAKAYLTVL ADQATPTNRL AALPKGRPDR ENSP00000344786/1-1240 GVAERDQGSY TCVASTELDQ DLAKAYLTVL ADQATPTNRL AALPKGRPDR ENSBTAP00000054775/1-1345 GVAERDQGSY TCVASTELDQ DLAKAYLTVL ADQATPTNRL AALPKGRPDR bmy_02395T0/1-975 GVAERDQGSY TCVASTELDQ DLAKAYLTVL ADQATPTNRL AALPKA---- BACU001105/1-1338 GVAERDQGSY TCVASTELDQ DLAKAYLTVL ADQATPTNRL AALPKGRPER 651 700 ENSTTRP00000004564/1-1310 PRDLELTDLA ERSVRLTWIP GDDNNSPITD YVVQFEEDQF QPGVWHDHSK ENSP00000344786/1-1240 PRDLELTDLA ERSVRLTWIP GDANNSPITD YVVQFEEDQF QPGVWHDHSK ENSBTAP00000054775/1-1345 PRDLELTDLA ERSVRLTWIP GDDNNSPITD YVVQFEEDQF QPGVWHDHSK bmy_02395T0/1-975 ---------- ---------- ---------- ---------- ---------- BACU001105/1-1338 PRDLELTDLA ERSVRLTWIP GDDNNSPITD YVVQFEEDQF QPGVWHDHSK 701 750 ENSTTRP00000004564/1-1310 FPGSVNSAIL QLSPYVNYQF RVIAINEVGS SHPSLPSERY RTSGAPPESN ENSP00000344786/1-1240 YPGSVNSAVL RLSPYVNYQF RVIAINEVGS SHPSLPSERY RTSGAPPESN ENSBTAP00000054775/1-1345 FPGSVNSAVL RLSPYVNYQF RVIAINEVGS SHPSLPSERY RTSGAPPESN bmy_02395T0/1-975 ---------- ---------- ---------- ---------- ------PESN BACU001105/1-1338 FPGSVNSAVL QLSPYVNYQF RVIAINEVGS SHPSLPSERY RTSGAPPESN 751 800 ENSTTRP00000004564/1-1310 PSDVKGEGTR KNNMEITWTP MNATSAFGPN LRYIVKWRRR ETRETWNNVT ENSP00000344786/1-1240 PGDVKGEGTR KNNMEITWTP MNATSAFGPN LRYIVKWRRR ETREAWNNVT ENSBTAP00000054775/1-1345 PSDVKGEGTR KNNMEITWTP MNATSAFGPN LRYIVKWRRR ETRETWNNVT bmy_02395T0/1-975 PSDVKGEGTR KNNMEITWTP MNATSAFGPN LRYIVKWRRR ETRETWNNVT BACU001105/1-1338 PSDVKGEGTR KNNMEITWTP MNATSAFGPN LRYIVKWRRR ETRETWNNVT 801 850 ENSTTRP00000004564/1-1310 VWGSRYVVGQ TPVYVPYEIR VQAENDFGKG PEPDTVIGYS GEDYPRAAPT ENSP00000344786/1-1240 VWGSRYVVGQ TPVYVPYEIR VQAENDFGKG PEPESVIGYS GED------- ENSBTAP00000054775/1-1345 VWGSRYVVGQ TPVYVPYEIR VQAENDFGKG PEPDTVIGYS GEDYPRAAPT bmy_02395T0/1-975 VWGSRYVVGQ TPVYVPYEIR VQAENDFGKG PEPGTVIGYS GED------- BACU001105/1-1338 VWGSRYVVGQ TPVYVPYEIR VQAENDFGKG PEPGTVIGYS GEDYPRAAPT 851 900 ENSTTRP00000004564/1-1310 DVKIRVLNST AISLQWNRVY SDTVQGQLRE YRAYYWRESS LLKNLWVSQK ENSP00000344786/1-1240 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054775/1-1345 DVKIRVLNST AISLQWNRVY SDTVQGQLRE YRAYYWRESS LLKNLWVSQK bmy_02395T0/1-975 ---------- ---------- ---------- ---------- ---------- BACU001105/1-1338 DVKIRVLNST AISLQWNRVY PDTVQGQLRE YRAYYWRESS LLKSLWVSQK 901 950 ENSTTRP00000004564/1-1310 RQQAGFPGDR LRGVVSRLFP YSNYKLEMAV VNGRGDGPRS ETKEFTTPEG ENSP00000344786/1-1240 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054775/1-1345 RQQAGFPGDR LRGVVSRLFP YSNYKLEMVV VNGRGDGPRS ETKEFTTPEG bmy_02395T0/1-975 ---------- ---------- ---------- ---------- ---------- BACU001105/1-1338 RQQASFPGDR LRGVVSRLFP YSNYKLEMVV VNGRGDGPRS ETKAFTTPEG 951 1000 ENSTTRP00000004564/1-1310 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXNGTKVGKQ ENSP00000344786/1-1240 LPSAPRRFRV RQPNLETINL EWDHPEHPNG IMIGYTLKYV AFNGTKVGKQ ENSBTAP00000054775/1-1345 VPSAPRRFRV RQPNLETINL EWDHPEHPNG ILIGYTLKYV AFNGTKVGKQ bmy_02395T0/1-975 LPSAPRRFRV RQPNLETINL EWDHPEHPNG ILTGYTLKYV AFNGTKVGKQ BACU001105/1-1338 VPSAPRRFRV RQPNLETINL EWDHPEHPNG ILTGYTLKYV AFNGTKVGKQ 1001 1050 ENSTTRP00000004564/1-1310 IVENFSPNQT KFTMQRADPV SRYRFSLSAR TQVGSGEAVT EESPAPPNEG ENSP00000344786/1-1240 IVENFSPNQT KFTVQRTDPV SRYRFTLSAR TQVGSGEAVT EESPAPPNEA ENSBTAP00000054775/1-1345 IVENFSPNQT KFTVQRADPV SRYRFSLSAR TQVGSGEAVT EESPAPPNEA bmy_02395T0/1-975 IVENFSPNQT KFTMQRADPV SRYRFSLSAR TQVGSGEAVT EESPAPPNE- BACU001105/1-1338 IVENFSPNQT KFTMQRADPV SRYRFSLSAR TQVGSGEAVT EESPAPPNE- 1051 1100 ENSTTRP00000004564/1-1310 SPATTPPTSP PTTVGVTGTV GSTDAT--AA TTEATTVPTI PTVAPSTVAT ENSP00000344786/1-1240 TPTAAPPTLP PTTVGATGAV SSTDATAIAA TTEATTVPII PTVAPTTIAT ENSBTAP00000054775/1-1345 TPTAAPPTSP PTTVGVPGTV SSTDATATAA ATEATTVPTV PPVAPTTTAT bmy_02395T0/1-975 ----APPTSP PTTVGVTGTV GSTDATATAA TTEATTVPTI PTVAPSTIAT BACU001105/1-1338 ----APPTSP PTTVGVTGTV GSTDATATAA TTEATTVPTI PTVAPSTIAT 1101 1150 ENSTTRP00000004564/1-1310 TT--VATTTT TTAAATTTES PPTTTR-TEI QESAPDEQSI WNVTVLPNSK ENSP00000344786/1-1240 TTTVATTTTT TAAATTTTES PPTTTSGTKI HESAPDEQSI WNVTVLPNSK ENSBTAP00000054775/1-1345 TE--ATATTA STATTTTTES PATTSR-TEI QESAPDEQSI WNVTVLPNSK bmy_02395T0/1-975 TI--VATTTA TTAAATTTES PPTTTR-TKI QEPAPDEQSI WNVTVLPNSK BACU001105/1-1338 TT--VATTTA TTAAATTTTE ---------- ---TPDEQSI WNVTVLPNSK 1151 1200 ENSTTRP00000004564/1-1310 WANITWKHNF GPGTDFVVEY IDSNHTKKTV PVKAQA--QP IQLTDLYPGM ENSP00000344786/1-1240 WANITWKHNF GPGTDFVVEY IDSNHTKKTV PVKAQA--QP IQLTDLYPGM ENSBTAP00000054775/1-1345 WANISWKHNF GPGTDFVVEY TDSNHTKKTV PVKAQA--QP VQLTDLYPGM bmy_02395T0/1-975 WANITWKHNF GPGTDFVVEY IDSNHTKKTV PVKAQAQPQP IQLTDLYPGM BACU001105/1-1338 WANITWKHNF GPGTDFVVEY IDSNHTKKTV PVKAQA--QP IQLTDLYPGM 1201 1250 ENSTTRP00000004564/1-1310 TYTLRVYSRD NEGISSTVIT FMTSTAYTNN QADIATQGWF IGLMCAVALL ENSP00000344786/1-1240 TYTLRVYSRD NEGISSTVIT FMTSTAYTNN QADIATQGWF IGLMCAIALL ENSBTAP00000054775/1-1345 TYTLRVYSRD HEGISSAVIT FMTSAAYTNN QADIATQGWF IGLMCAIALL bmy_02395T0/1-975 TYTLRVYSRD NEGISSTVIT FMTSTAYTNN QADIATQGWF IGLMCAVALL BACU001105/1-1338 TYTLRVYSRD NEGISSTVIT FMTSTAYTNN QADIATQGWF IGLMCAVALL 1251 1300 ENSTTRP00000004564/1-1310 VLTLLIVCFI KRSRGGKYP- -VREKKDVPL GPEDPKEEDG SFDYSDEDNK ENSP00000344786/1-1240 VLILLIVCFI KRSRGGKYP- -VREKKDVPL GPEDPKEEDG SFDYSDEDNK ENSBTAP00000054775/1-1345 VLILLIVCFI KRSRGGKYPD QVREKKDVPL GPEDPKEEDG SFDYSDEDNK bmy_02395T0/1-975 VLILLIVCFI KRSRGGKYP- -VREKKDVPL GPEDPKEEDG SFDYSDEDNK BACU001105/1-1338 VLILLIVCFI KRSRGGKYP- -VREKKDVPL GPEDPKEEDG SFDYSDEDNK 1301 1350 ENSTTRP00000004564/1-1310 PLQGSQTSLD GTIKQQESDD SLVDYGEGGE GQFNEDGSFI GQYTVKKDKE ENSP00000344786/1-1240 PLQGSQTSLD GTIKQQESDD SLVDYGEGGE GQFNEDGSFI GQYTVKKDKE ENSBTAP00000054775/1-1345 PLQGSQTSLD GTIKQQESDD SLVDYGEGGE GQFNEDGSFI GQYTVKKDKE bmy_02395T0/1-975 PLQGSQTSLD GTIKQQESDD SLVDYGEGGE GQFNEDGSFI GQYTVKKDKE BACU001105/1-1338 PLQGSQTSLD GTIKQQESDD SLVDYGEGGE GQFNEDGSFI GQYTVKKDKE 1351 1400 ENSTTRP00000004564/1-1310 ETEGNESSEA TSPVNAIYSL A ENSP00000344786/1-1240 ETEGNESSEA TSPVNAIYSL A ENSBTAP00000054775/1-1345 ETEGNESSEA TSPVNAIYSL A bmy_02395T0/1-975 ETEGNESSEA TSPVNAIYSL A BACU001105/1-1338 ETEGNESSEA TSPVNAIYSL A