KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:24:59 2014 Check: 00 .. Name: ENSP00000226355/1-599 Len: 611 Check: 5918 Weight: 1.00 Name: ENSTTRP00000006230/1-596 Len: 611 Check: 6395 Weight: 1.00 Name: ENSBTAP00000054782/1-604 Len: 611 Check: 3275 Weight: 1.00 Name: bmy_20629T0/1-611 Len: 611 Check: 4502 Weight: 1.00 // 1 50 ENSP00000226355/1-599 MKLLKLTGFI FFLFFLTESL TLPTQPRDIE NFNSTQKFIE DNIEYITIIA ENSTTRP00000006230/1-596 MKQLKLTGF- LFFFFLTESL TLPTKPQDVD DVSITQKFIE DNIGYITIIA ENSBTAP00000054782/1-604 MKQLKLTGFV IFFFFLTESL TLPTQPQDVD DVRITQKFID DNIGYITIIA bmy_20629T0/1-611 MKQLKLTGFV IFFFFLTESL TLPTKPQDVD DVSITQKFIE DNIGYITIIA 51 100 ENSP00000226355/1-599 FAQYVQEATF EEMEKLVKDM VEYKDRCMAD KTLPECSKLP NNVLQEKICA ENSTTRP00000006230/1-596 FAQYIQEASF EEVEMLVKAM TEYRDKCLAD MTLPECSKLA NDVLLENICT ENSBTAP00000054782/1-604 FAQYIQEASF EEVEMLVKAM TEYRDKCLAD RTLPECSKLA NEVLLENICA bmy_20629T0/1-611 FAQYIQEASF EEVEMLVKAM TEYRDKCLAD MTLPECSKLA NDVLLENICA 101 150 ENSP00000226355/1-599 MEGLPQKHNF SHCCSKVDAQ RRLCFFYNKK SDVGFLPPFP TLDPEEKCQA ENSTTRP00000006230/1-596 MEGLPQKHNF SHCCHKADFE RKHCFLHNKK ADVGFLPPLP TLDPEEKCQT ENSBTAP00000054782/1-604 MEGLPQKYNF SHCCHKVDFE RRLCFFHNKK ADIGLLPPLP TLDPEEKCQT bmy_20629T0/1-611 MEGLPQKHNF SHCCHKADFE RKHCFLHNKK ADVGFLPPLP TLDPEEKCQT 151 200 ENSP00000226355/1-599 YESNRESLLN HFLYEVARRN PFVFAPTLLT VAVHFEEVAK SCCEEQNKVN ENSTTRP00000006230/1-596 YKNNRESFLN NYIYEVSRRN PFVFAPTLLT AAARFEEMTK TCCEEQEKAN ENSBTAP00000054782/1-604 YKNNRESFLN NYVYEVSRRN PFVFAPTLLT VAARFEEMTK TCCEEQEKAN bmy_20629T0/1-611 YKNNRESFLN NYIYEVSRRN PFVFVPTLLT AAARFEEMTK ICCEEQEKAN 201 250 ENSP00000226355/1-599 CLQTRAIPVT QYLKAFSSYQ KHVCGALLKF GTKVVHFIYI AILSQKFPKI ENSTTRP00000006230/1-596 CFRTKAETFI QYLKALSSYQ KNVCGALMKF GPQILKSINI AVLSQKFPKI ENSBTAP00000054782/1-604 CFQTKAEPFI YYLKALSSYQ KNACRALMKF GRQILQSINI AILSQKFPKI bmy_20629T0/1-611 CFRTKAETFI QYLKALSSYQ KNVCGALMKF GPQILKSINI AVLSQKFPKI 251 300 ENSP00000226355/1-599 EFKELISLVE DVSSNYDGCC EGDVVQCIRD TSKVMNHICS KQDSISSKIK ENSTTRP00000006230/1-596 EFKELISLLE DVSSKYDGCC EGDVVQCIHG RSKVMSHICS KQDSISSKIK ENSBTAP00000054782/1-604 GFKQLTSLLE DVSSKYDGCC EGDVVQCIRG RSKVMSHICS KQDSISSKIK bmy_20629T0/1-611 EFKELISLLE DVSSKYDGCC EGDVVQCIHG RSKVMSHICS KQDSISSKIK 301 350 ENSP00000226355/1-599 ECCEKKIPER GQCIINSNKD DRPKDLSLRE GKFTDSENVC QERDADPDTF ENSTTRP00000006230/1-596 ECCEKKIPER GECIIYSNKD DRPNNLPLRE AKFTESENVC EERDADQENF ENSBTAP00000054782/1-604 DCCEKKIPER GECIIYSNKD DRPNDLSLRE AKFIESDNVC EKRDADQANF bmy_20629T0/1-611 ECCEKKIPER GECIIYSNKD DRPNNLPLRE AKFTESENVC EERDADQENF 351 400 ENSP00000226355/1-599 FAKFTFEYSR RHPDLSIPEL LRIVQIYKDL LRNCCNTENP PGCYRYAEDK ENSTTRP00000006230/1-596 MAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXENK ENSBTAP00000054782/1-604 MAEFLYEYSR RHPELSTPEL LRIAKVYKDL LKECCNMENP PECYRHAENR bmy_20629T0/1-611 MAEFLYQYSR RHPELSTPEL LRIAGVYEDL LRECCNTKNP PDCYRHAENK 401 450 ENSP00000226355/1-599 FNETTEKSLK MVQQECKHFQ NLGKDGLKYH YLIRLTKIAP QLSTEELVSL ENSTTRP00000006230/1-596 FNETTEKSLK IVQRECEHFQ ISGKDDLKYH YLINLTKLAP QLSTEELTFL ENSBTAP00000054782/1-604 FNETTEKSLK IVQRECEHFQ NLGKDDLKYH YLINLTKLAP QLSTEELTFL bmy_20629T0/1-611 FNETTEKSLK IVQRECEHFQ ILGKDDLKYH YLINLTKLAP QLSTEELTFL 451 500 ENSP00000226355/1-599 GEKMVTAFTT CCTLSEEFAC VDNLADLVFG ELCGVNENRT INPAVDHCCK ENSTTRP00000006230/1-596 GKEMVTALTT CCTLSEEFAC VDNLVDLVLG ELCGINENRS INPAVDHCCK ENSBTAP00000054782/1-604 GKEMVMALTT CCTLSEEFAC VDNLVDLVLG ELCGINENRN INPAVDHCCK bmy_20629T0/1-611 GKEMVTALTT CCTLSEEFAC VDNLVDLVLG ELCGINENRS INPAVDHCCK 501 550 ENSP00000226355/1-599 TNFAFRRPCF ESLKADKTYV PPPFSQDLFT FHADMCQSQN EELQRKTDRF ENSTTRP00000006230/1-596 TNFAFRRSCF EGLEADKTYV PPPTSQGLFT FHTDLCQAHN EELQRKKDRF ENSBTAP00000054782/1-604 TNFAFRRSCF ESLEADKTYV PPSTSQGLFT FHADLCQAHN EELQRKKDRF bmy_20629T0/1-611 TNFAFRRSCF EGLEADKTYV SPSTSQGVFI FHADLCQAHN EELQRKKDRF 551 600 ENSP00000226355/1-599 LVNLVKLKHE LTDEELQSLF TNFANVVDKC CKAESPEVCF NEESPKIGN- ENSTTRP00000006230/1-596 LVNLVKL-PE LT-VELQSLL MDFXXXXXXX XXXXXXXXXX XXXGPKVSQ- ENSBTAP00000054782/1-604 LVNLVKLKPE LAGEELWSLL ADFTNVVEKC CKAQEPEACF KEESPKLAAK bmy_20629T0/1-611 LVNLVKLKPE LTGVELQSLL VDFTNVVKKC CQALGPEACF KEEVLEKREE 601 650 ENSP00000226355/1-599 ---------- - ENSTTRP00000006230/1-596 ---------- - ENSBTAP00000054782/1-604 SQAA------ - bmy_20629T0/1-611 DQHTCFLSVL W