KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:59 2014 Check: 00 .. Name: bmy_17092T0/1-379 Len: 438 Check: 9114 Weight: 1.00 Name: ENSTTRP00000001598/1-417 Len: 438 Check: 3492 Weight: 1.00 Name: BACU018518/1-408 Len: 438 Check: 1904 Weight: 1.00 Name: ENSP00000373715/1-420 Len: 438 Check: 3858 Weight: 1.00 Name: ENSBTAP00000054783/1-428 Len: 438 Check: 7851 Weight: 1.00 // 1 50 bmy_17092T0/1-379 ---------- ----MHCS-- ---------- -----C---- ---------- ENSTTRP00000001598/1-417 METKRVEIPC SVLDDLCSRF ILHIPSEERD NAIRVCFQIE LAHWFYLDFY BACU018518/1-408 ---------- -MFFVFDSRF ILHIPSEERD NAIRVCFQIE LAHWFYLDFY ENSP00000373715/1-420 METKRVEIPG SVLDDFCSRF ILHIPSEERD NAIRVCFQIE LAHWFYLDFY ENSBTAP00000054783/1-428 METKRVEIPG SVLDDLCSRF ILHIPSEERD NAIRVCFQIE LAHWFYLDFY 51 100 bmy_17092T0/1-379 ---------C GSSSWRPNGW RFPAASWTIS AGEDVEKILD EWKEYKMGVP ENSTTRP00000001598/1-417 MQNTPGLPQC GIRDFAK--A VFSHCPFLLP QGEDVEKILD EWKEYKMGVP BACU018518/1-408 MQNTPGLPQC GIRDFAK--A DILHCPFLLP QGEDVEKILD EWKEYKMGVP ENSP00000373715/1-420 MQNTPGLPQC GIRDFAK--A VFSHCPFLLP QGEDVEKVLD EWKEYKMGVP ENSBTAP00000054783/1-428 MQNTPGLPQC GIRDFAKDGV LFNHCPFLLP QGEDVEKILD EWKEYKMGVP 101 150 bmy_17092T0/1-379 TYGAIILDET LENVLLVQGY LAKSGWGFPK GKVNKEEAPH DCAAREVFEE ENSTTRP00000001598/1-417 TYGAIILDET LENVLLVQGY LAKS-WGFKR -KVNR--APH DCAAREVFEE BACU018518/1-408 TYGAIILDET LENVLLVQGY LAKSGWGFPK GKVNKEEAPH DCAAREVFEE ENSP00000373715/1-420 TYGAIILDET LENVLLVQGY LAKSGWGFPK GKVNKEEAPH DCAAREVFEE ENSBTAP00000054783/1-428 TYGAIILDET LENVLLVQGY LAKSGWGFPK GKVNKEEAPH DCAAREVFEE 151 200 bmy_17092T0/1-379 TGFDIKDYIC KDDYIELRIN DQLARLYIIP GIPKDTKFNP KTRREIRNIE ENSTTRP00000001598/1-417 TGFDIKDYIC KDDYIELRIN DQLARLYIIP GIPKDTKFNP KTRREIRNIE BACU018518/1-408 TGFDIKDYIC KDDYIELRIN DQLARLYIIP GIPKDTKFNP KTRREIRNIE ENSP00000373715/1-420 TGFDIKDYIC KDDYIELRIN DQLARLYIIP GIPKDTKFNP KTRREIRNIE ENSBTAP00000054783/1-428 TGFDIKDYIC KDDYIELRIN DQLARLYIIP GIPKDTKFNP KTRREIRNIE 201 250 bmy_17092T0/1-379 WFSIEKLPCH RNDMTPKSKL GLAPNKFFMA IPFIRPLRDW LSRRFGDSSD ENSTTRP00000001598/1-417 WFSIEKLPCH RNDMTPKSKL GLAPNKFFMA IPFIRPLRDW LSRRFGDSSD BACU018518/1-408 WFSIEKLPCH RNDMTPKSKL GLAPNKFFMA IPFIRPLRDW LSRRFGDSSD ENSP00000373715/1-420 WFSIEKLPCH RNDMTPKSKL GLAPNKFFMA IPFIRPLRDW LSRRFGDSSD ENSBTAP00000054783/1-428 WFSIEKLPCH RNDMTPKSKL GLAPNKFFMA IPFIRPLRDW LSRRFGDSSD 251 300 bmy_17092T0/1-379 SDNGFSSAGS TPAKPTVEKL SRTKFRHSQQ LFPEGSPGDQ WVKHRQPLQQ ENSTTRP00000001598/1-417 SDNGFSSAGS TPAKPTVEKL SRTKFRHSQQ LFPEGSPGDQ WVKHRQPLQQ BACU018518/1-408 SDNGFSSAGS TPAKPTVEKL SRTKFRHSQQ LFPEGSPGDQ WVKHRQPLQQ ENSP00000373715/1-420 SDNGFSSTGS TPAKPTVEKL SRTKFRHSQQ LFPDGSPGDQ WVKHRQPLQQ ENSBTAP00000054783/1-428 SDNGFSSAGS TPAKPTVEKL SRTKFRHSQQ LFPEGSPGDQ WVKHRQPLQH 301 350 bmy_17092T0/1-379 KPYNNNHSEM SDLLKAK--- SQSMRGNGRK QYQESPNQKK RTNGVHSQPG ENSTTRP00000001598/1-417 KPYNNNHSEM SDLLKAKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU018518/1-408 KPYNNNHSEM SDLLKAKGTW VQSLVGELR- SYMPAARPKK NK-------- ENSP00000373715/1-420 KPYNN-HSEM SDLLKGK--- NQSMRGNGRK QYQDSPNQKK RTNGL--QPA ENSBTAP00000054783/1-428 KPYSNHHAEV SDLLKAKEKQ NQSIRGNGRK QYQDSPNAKK KPNGVHSQPA 351 400 bmy_17092T0/1-379 KQQNPL--MV DIFPEDLITS SFIFLELESL QILHYAVYDL PCSGEDQLLE ENSTTRP00000001598/1-417 X--------- -XKCEKKLHP RKLQDAFET- ----DAVYDL PCSGEDQLLE BACU018518/1-408 RERDPLTLFW KIKCKKKL-- -ELSLSYGA- ----DAVYDL PCSGEDQLLE ENSP00000373715/1-420 KQQNSL---- -MKCEKKLHP RKLQDNFET- ----DAVYDL PSSSEDQLLE ENSBTAP00000054783/1-428 KQQNPL---- -VKCEKKLHP RKLQDTFET- ----DAVYDS PYSGEDQLLE 401 450 bmy_17092T0/1-379 HAEGQSVACN GRCKFPFSSR AFLSFKFDHN AIMKILDL ENSTTRP00000001598/1-417 HAEGQSVACN GRCKFPFSSR AFLSFKFDHN AIMKILDL BACU018518/1-408 HAEGQSVACN GRCKFPFSSR AFLSFKFDHN AIMKILDL ENSP00000373715/1-420 HAEGQPVACN GHCKFPFSSR AFLSFKFDHN AIMKILDL ENSBTAP00000054783/1-428 HAEGQAVTCN GHCKLPFSSR AFLSFKFDHN AIMKILDL