KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:24:59 2014 Check: 00 .. Name: bmy_20976T0/1-299 Len: 301 Check: 1556 Weight: 1.00 Name: ENSP00000244241/1-197 Len: 301 Check: 8794 Weight: 1.00 Name: ENSTTRP00000005909/1-199 Len: 301 Check: 2528 Weight: 1.00 Name: BACU004290/1-139 Len: 301 Check: 5777 Weight: 1.00 Name: ENSBTAP00000054784/1-201 Len: 301 Check: 7799 Weight: 1.00 // 1 50 bmy_20976T0/1-299 MARPFPRREG AGCSPGVARG IKGAASRLQP GQPPGLLGPP GAPLRSPEPS ENSP00000244241/1-197 ---------- ---------- -----MTLLP GLLFLTWLHT CLAHHDPSLR ENSTTRP00000005909/1-199 ---------- ---------- ------MPLR VLLLLLWPPT SLALHSPPTP BACU004290/1-139 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054784/1-201 ---------- ---------- -----HQLLP GLLLLLWLPT SLARHSPSLL 51 100 bmy_20976T0/1-299 PRRDAWLTTA PHSGRGPAPT RPGPGAATRR RSCPWATPLP TCWR--ERPG ENSP00000244241/1-197 G--------- -------HPH SHGT------ ---------P HCYSAEELPL ENSTTRP00000005909/1-199 A--------- ----RGPHPH S-GT------ ---------P RCYSAAELPL BACU004290/1-139 ---------- ---------- MAGT------ ---------P RCYSAEELPL ENSBTAP00000054784/1-201 V--------- ---GAHTHPH SPGT------ ---------L RCYSAEELPL 101 150 bmy_20976T0/1-299 GRRRCRWRWC PAWRRRAAGA GTRVPRPGAS APCCSLRRCW KLASTGAPSR ENSP00000244241/1-197 GQAP------ PHLLARGAKW GQALPVALVS SLEAASHRG- ---------- ENSTTRP00000005909/1-199 GHTP------ PHLLARAAKW EQALPVALAS SLEAAGHMC- ---------- BACU004290/1-139 GHAP------ PHLLARAARW EQALPAALVS SLEAAGRRG- ---------- ENSBTAP00000054784/1-201 GHAP------ PHLLARAAKW EQALPVALVS SLEAVGRRR- ---------- 151 200 bmy_20976T0/1-299 PGDTGPWGTR TVSLPGHQLR AKPSQRPTPP ALRPGAALST WGRLGAAGRE ENSP00000244241/1-197 ---------- --------RH ERPSATTQCP VLRPEEVL-- ---------E ENSTTRP00000005909/1-199 ---------- --------RH AGSPARNQCP VLQPEEVL-- ---------E BACU004290/1-139 ---------- --------RH GGP------- ---------- ---------- ENSBTAP00000054784/1-201 ---------- --------RH AGGPAGTQCP VLQPGEVL-- ---------E 201 250 bmy_20976T0/1-299 GGARPGSLTP RLSRSVDTDE SRYPQKLAFA ECLCRGCISA KTGRETAALN ENSP00000244241/1-197 ADTHQRSISP WRYR-VDTDE DRYPQKLAFA ECLCRGCIDA RTGRETAALN ENSTTRP00000005909/1-199 ADVHQRSISP WRYR-VDTDE SRYPQKLAFA ECLCRGCISA KTGRETAALN BACU004290/1-139 ---------- -----VDTDE SRYPQKLAFA ECLCRGCICP KTGRETAALN ENSBTAP00000054784/1-201 ADVHQRSISP WRYR-VDTDE SRYPQKLAFA ECLCRGCISA KTGRETAALN 251 300 bmy_20976T0/1-299 SVPLAQSLLV LRRRPCSRDA AGAPTPGAFA FHTEFIRVPV GCTCVLPRSA ENSP00000244241/1-197 SVRLLQSLLV LRRRPCSRDG SGLPTPGAFA FHTEFIHVPV GCTCVLPRSV ENSTTRP00000005909/1-199 SVPLVQSLLV LRRRPCSRDA AGVPTPGAFT FHTEFIRVPV GCTCVLPRSA BACU004290/1-139 SVPLAQSLLV LRRRPCSRDA AAAPTPGAFA FHTEFIRVPV GCTCVLPRSA ENSBTAP00000054784/1-201 SVPLVQSLLV LRRRPCSRDA TGAPTPGAFT FHAEFIRVPV GCTCVLPRSA 301 350 bmy_20976T0/1-299 R ENSP00000244241/1-197 - ENSTTRP00000005909/1-199 R BACU004290/1-139 R ENSBTAP00000054784/1-201 -