KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:00 2014 Check: 00 .. Name: ENSP00000308708/1-516 Len: 578 Check: 7032 Weight: 1.00 Name: ENSBTAP00000054786/1-578 Len: 578 Check: 778 Weight: 1.00 Name: ENSTTRP00000013595/1-504 Len: 578 Check: 4511 Weight: 1.00 Name: bmy_10966T0/1-470 Len: 578 Check: 8603 Weight: 1.00 Name: BACU018060/1-428 Len: 578 Check: 6371 Weight: 1.00 // 1 50 ENSP00000308708/1-516 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000054786/1-578 RLPPAGGGTC LTPLPRRRAG VCAQSPACAT LTRARGPRRP SAVVRPALSG ENSTTRP00000013595/1-504 ---------- ---------- ---------- ---------- ---------- bmy_10966T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU018060/1-428 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000308708/1-516 --------MT RGGGGGDTIS KMPDVKESVP PKYPGDSEGR SCKPETSGPP ENSBTAP00000054786/1-578 GPPPRRRTSS CGPRGRDSIS RMTDVEENVP VKDPGDAESR PCKPESSGPT ENSTTRP00000013595/1-504 ---------- ---------- -MTDVEENVP LKDPGDAESG PCKPETSGPT bmy_10966T0/1-470 ---------- ---------- -MTDVEENVP LKDTGDAESG PCKPETSGPI BACU018060/1-428 ---------- ---------- -MTDVEENVP LKDPGDAESG ACKPETSGPT 101 150 ENSP00000308708/1-516 QEDKSGSEDP PP-FLSVTGL TETVNEVSKL SNKIGMNCDY YMEEKVLPPS ENSBTAP00000054786/1-578 REDKSSLRDH PSHLLSVTGL RNTVNDASKL SSEIGMNRDF RMEEKVLPPG ENSTTRP00000013595/1-504 RQDMSSPKNH PF-ILSVTGL IDTVNDVSKL SKEIGMNHDF HMEEKVLPRS bmy_10966T0/1-470 REDMSSPKDH P------SRL IDTVNDVSKL SKEIGMNHDF HMEEKVLPPS BACU018060/1-428 REDMSSPKDH P------SRL IDTVNDVSKL SKEIGMNHDF HMEEKVLPPS 151 200 ENSP00000308708/1-516 SLEGKVKETV HNAFWDHLKE QLSATPPDFS CALELLKEIK EILLSLLLPR ENSBTAP00000054786/1-578 SLEGRIRETM HDAFWDHLKE RLSATPPDFS CALELLKEIK EILLSLLLPR ENSTTRP00000013595/1-504 SLEGRVKETM HNAFWDHLEE QLLATPPDFS CALELLKEIK EILLSLLLPR bmy_10966T0/1-470 SYIDIAINKN HS-------- ---------- ---------- -ILLSLLLPR BACU018060/1-428 SYIDIAINKN HS-------- ---------- ---------- -ILLSLLLPR 201 250 ENSP00000308708/1-516 QNRLRIEIEE ALDMDLLKQE AEHGALKVLY LSKYVLNMMA LLCAPVRDEA ENSBTAP00000054786/1-578 QNRLRSEIEE ALDMDLLTQE AEHGALNVPH LSKYILNMMT LLCAPVRDEA ENSTTRP00000013595/1-504 QNRLRSEIEE GLDMNLLRQE AEHGALNVPR LSKYILNMMT LLCAPIRDEA bmy_10966T0/1-470 QNRLRSEIEE GLDMNLLKQE AEHGALNVPH LSKYILNMMT LLCAPVRDEA BACU018060/1-428 QNRLRSEIEE GLDMNLLKQE AEHGALNVPH LSKYILNMMT LLCAPVRDEA 251 300 ENSP00000308708/1-516 VQKLENITDP VWLL--RGIF QVLGRMKMDM VNYTIQSLQP HLQEHSIQYE ENSBTAP00000054786/1-578 VQKLENISDP VWLLSVRGIF QVLGLMKMDM VNYTIQSLQP QLQEHSIQYE ENSTTRP00000013595/1-504 VQKLENITDP VRLL--RGIF QVLGLMKMDM VNYTIQSLQP QLQEHSIQCE bmy_10966T0/1-470 VQKLENITDP VRLL--RGIF QVLGLMKMDM VNYTIQSLQP QLQEHSIQYE BACU018060/1-428 VQKLENITDP VRLL--RGIF QVLGLMKMDM VNYTIQSLQP QLQEHSIQYE 301 350 ENSP00000308708/1-516 RAKFQELLNK QPSLLNHTTK WLTQAAGDLT MSPPTCPDTS DSSSVAGPSP ENSBTAP00000054786/1-578 RAKFQDLLNK QPSLLDHTAR WLTRAAAQLS APPPSGPDAA DAASSPCSSP ENSTTRP00000013595/1-504 RAKFQELLNK QPSLLDHTTK WLTRAAADLS TPPPSCPDSP DSSSVVCPSP bmy_10966T0/1-470 RAKFQELLNK QPSLLDHTTK WLTRAAADLS TPPPSCPDTP DSSSVVCPSP BACU018060/1-428 RAKFQELLNK QPSLLDHTTK WLTRAAADLS TPPPSCPDTP DSSSVVCPSP 351 400 ENSP00000308708/1-516 NEAANNPEPL SPTMVLCQGF LNLLLWDLEN EEFPETLLMD RTRLQELKSQ ENSBTAP00000054786/1-578 GEAASSPEPL SPTMVLSQGF LNLLLWDPED DEFPETLLTD RARLQELEAQ ENSTTRP00000013595/1-504 SEAANSPEPL NPKMVLSQGF LNLLLWDPED EEFPETLLMD RAQLQELGAQ bmy_10966T0/1-470 SEAANSPEPL SPKMVLSQGF LNLLLWDPED EEFPETLLMD RAQLQELEAQ BACU018060/1-428 SEAANSPEPL SPKMVLSQGF LNLLLWDPED EEFPE----- ---------- 401 450 ENSP00000308708/1-516 LHQLTVMASV LLVASSFSGS VLFGSPQFVD KLKRITKSLL EDFHSRP-EE ENSBTAP00000054786/1-578 LRQLTILASV LLVSSSFSGS VLFGSPQFVD KLKRVTRALL EEFKSRPEEE ENSTTRP00000013595/1-504 LRQLTILASV LLVASSFSGS VLFGSPQLVD KLKRITKALM EELKSRPEEE bmy_10966T0/1-470 LRQLTILASV LLVASSFSGS VLFGSPQFVD KLKRITKALM EEFKSRPEEE BACU018060/1-428 ---------- ---------- -------FVD KLKRITKALM EEFKSRPEEE 451 500 ENSP00000308708/1-516 AILTVSEQVS QEIHQSLKNM GLVALSSDNT ASLMGQLQNI AKKENCVCSV ENSBTAP00000054786/1-578 AVLTVSEQVA QEIHQSLKNM GLAALSSDNT ASLIGQLQDV ARKENCVRSV ENSTTRP00000013595/1-504 AMLTVSEQVS QEIHQSLQNM GLAALSSDNT ASLMGELQNI TKKENCVHSV bmy_10966T0/1-470 AMLTVSEQVS QEIHRSLKNM GLAALSSDNT ASLIGELQNI TKKENCVHSV BACU018060/1-428 AMLTVSEQVS QEIHRSLRNM GLAALSSDNT ASLIGELQNI TRKENCVHSV 501 550 ENSP00000308708/1-516 IDQRIHLFLK CCLVLGVQRS LLDLPGGLTL IEAELAELGQ KFVNLTHHNQ ENSBTAP00000054786/1-578 IDQRIHLFLK CCLVLGVQRS LLDLPGGLTL IEAELAELGQ KFVSLTHHNQ ENSTTRP00000013595/1-504 IGQRIHLFLK CCLVLGVQRS LLDLPGGLTL LEAELAELGQ KFVNLTHHNQ bmy_10966T0/1-470 IDQRIHLFLK CCLVLGVQRS LLDLPGGLTL IEAELAELGQ KFVNLTHHNQ BACU018060/1-428 IDQRIHLFLK CCLVLGVQQS LLDLPGGLTL IEAELAELGQ KFINLTHHNQ 551 600 ENSP00000308708/1-516 QVFGPYYTEI LKTLISPAQA LETKVESV ENSBTAP00000054786/1-578 QVFGPYYTEI LKSLLPPAQV LETEVASL ENSTTRP00000013595/1-504 QVFGPFYMEI LKTLIPPAQA LETEVGSL bmy_10966T0/1-470 QVFGPYYTEI LKTLIPPAQA LETEVGSL BACU018060/1-428 QVFGPYYMEI LKTLIPPAQA LETEVGSL