KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 18:25:00 2014 Check: 00 ..
Name: ENSP00000384794/1-353 Len: 368 Check: 7405 Weight: 1.00
Name: ENSBTAP00000054793/1-368 Len: 368 Check: 1452 Weight: 1.00
Name: bmy_01038T0/1-354 Len: 368 Check: 6919 Weight: 1.00
Name: BACU007270/1-354 Len: 368 Check: 9111 Weight: 1.00
//
1 50
ENSP00000384794/1-353 ---------- ----MSKPPD LLLRLLRGAP RQRVCTLFII GFKFTFFVSI
ENSBTAP00000054793/1-368 PADSCWRLLT SGEMTSAPPD CLLRLLRDTP RQRVCTLFII GFKLTFFVSV
bmy_01038T0/1-354 ---------- ---MTSRPPD CLLRLLRGAP RQRVCTLFII GFKFTFLVSV
BACU007270/1-354 ---------- ---MTSRPPD CLLRLLRGGP RQRVCTLFII GFKFTFLVSV
51 100
ENSP00000384794/1-353 MIYWHVVGEP KEKGQLYNLP AEIPCPTLTP PTPPSHG-PT PGNIFFLETS
ENSBTAP00000054793/1-368 MVYWHVVGEP GGQGQLSNLP VDVPCPHMVP PTPPPSGIPP PGNIFFLETS
bmy_01038T0/1-354 MVYWHVVGEP GGQGQFSHLP ADIPCPRLVP HTPPP-GTPP PGNIFFLETS
BACU007270/1-354 MVYWHIVGEP GGQGQFSNLP ADIPCPHLVP HTPSS-GTPP PGNIFFLETS
101 150
ENSP00000384794/1-353 DRTNPNFLFM CSVESAARTH PESHVLVLMK GLPGGNASLP RHLGISLLSC
ENSBTAP00000054793/1-368 DRTNPNFLFM CSVESAARAH PESPVVVLMK GLPGGNASRP RHLGLSLLGC
bmy_01038T0/1-354 DRTDPNFLFM CSVESAARAQ PESRVVVLMK GLPGGNASLP RHLGLSLLGC
BACU007270/1-354 DRTDPNFLFM CSVESAARAQ PESRVVVLTK GLPGGNASLP RQLGLSLLGC
151 200
ENSP00000384794/1-353 FPNVQMLPLD LRELFRDTPL ADWYAAVQGR WEPYLLPVLS DASRIALMWK
ENSBTAP00000054793/1-368 FPNVQMRPLD LGELFRDTPL AAWYAAVQRR WEPYLLPVLS DASRIALLWK
bmy_01038T0/1-354 FPNVQMLPLD LQELFRDTPL AAWYAALQRR WEPYVLPVLS DASRIALMWK
BACU007270/1-354 FPNVQMLPLD LQELFRDTAL AGWYAALQWQ WEPYVLPVLS DASRTALMWK
201 250
ENSP00000384794/1-353 FGGIYLDTDF IVLKNLRNLT NVLGTQSRYV LNGAFLAFER RHEFMALCMR
ENSBTAP00000054793/1-368 FGGIYLDTDF IVLKDLRNLT NALGTQSRYV LNGAFLAFEQ HHEFMAQCMR
bmy_01038T0/1-354 FGGIYLDTDF IVLKSLGNLT NALGTQSRYV LNGAFLAFER HHEFMALCMR
BACU007270/1-354 FGGIYLDTDF IVLKSLGNLT NALGTQSRYV PNGAFLAFKR HHEFVALCMR
251 300
ENSP00000384794/1-353 DFVDHYNGWI WGHQGPQLLT RVFKKWCSIR SLAESRACRG VTTLPPEAFY
ENSBTAP00000054793/1-368 DFVTHYNGWI WGHQGPQLLT RVFKKWCSIR SLSESRACRG VTTLPPEAFY
bmy_01038T0/1-354 DFVAHYNGWI WGHQGPQLLT RVFKKWCSIR SLGESHACRG VTALPYEAFY
BACU007270/1-354 DFVAHYNSWI WGHQGPQLLT RVFKKWCSIR SLGESRACRG VTTLPYEAFY
301 350
ENSP00000384794/1-353 PIPWQDWKKY FEDINPEELP RLLSATYAVH VWNKKSQGTR FEATSRALLA
ENSBTAP00000054793/1-368 PIPWQNWKKY FEDISPQELT RLLNATFAVH VWNKKSQGTR FEATSKALLA
bmy_01038T0/1-354 PIPWQNWKKY FEDVSPEELS RLLNATYAVH VWNKKSQGTR FKATSRALLA
BACU007270/1-354 PIPWQNWKKY FEDVSPEELS RLLNATYAVH VWNKKSQGTR FKATSRALLA
351 400
ENSP00000384794/1-353 QLHARYCPTT HEAMKMYL
ENSBTAP00000054793/1-368 QLHARYCPTT HKAMKMYL
bmy_01038T0/1-354 QLHARYCPTT HKAMKLYL
BACU007270/1-354 QLHARYCPTT HKAMKLYL