KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:04 2014 Check: 00 .. Name: ENSBTAP00000054836/1-574 Len: 581 Check: 9192 Weight: 1.00 Name: ENSP00000310490/1-471 Len: 581 Check: 6270 Weight: 1.00 Name: ENSTTRP00000003754/1-469 Len: 581 Check: 8154 Weight: 1.00 Name: bmy_01775T0/1-471 Len: 581 Check: 7955 Weight: 1.00 Name: BACU001271/1-453 Len: 581 Check: 9529 Weight: 1.00 // 1 50 ENSBTAP00000054836/1-574 AVSARPGPGH YPPPPHPSRP RWPRRPVARS VYLESRSKWD SISASSPLRP ENSP00000310490/1-471 ---------- -MPAPQRKHR R--------- ---------- ---------- ENSTTRP00000003754/1-469 ---------- -MPGPRRHRP ---------- ---------- ---------- bmy_01775T0/1-471 ---------- -MPRSLKEAQ TW-------- ---------- ---------- BACU001271/1-453 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000054836/1-574 RPPGKRGENR AKPFFALPLP RTARRGRRGP GVLALGPHTA PTPPPPPASV ENSP00000310490/1-471 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003754/1-469 ---------- ---------- ---------- ---------- ---------- bmy_01775T0/1-471 ---------- ---------- ---------- ---------- ---------- BACU001271/1-453 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000054836/1-574 LSCSGLDLRY AKVPKGDTDM -FPLPQETMT PKPTGPPDGG WGWVVAAAGF ENSP00000310490/1-471 ---------- ----GGFSHR CFPTPQTAMT PQPAGPPDGG WGWVVAAAAF ENSTTRP00000003754/1-469 ---------- ----GDFSHR -WSPSQAVMT PKPAGPPDGV WGWVVAAAAF bmy_01775T0/1-471 ---------- ----RLFSQV -FPLLQAVMT PKPAGPPDGG WGWVVAAAAF BACU001271/1-453 ---------- ---------- --------MT PKPAGPPDGG WGWVVAAAAF 151 200 ENSBTAP00000054836/1-574 AVNGLSYGVL RSLGLAFPDF AEYFDRNAQE TAWVSALALA VQQAAS---- ENSP00000310490/1-471 AINGLSYGLL RSLGLAFPDL AEHFDRSAQD TAWISALALA VQQAAS---- ENSTTRP00000003754/1-469 AVNGLSYGLL RSLGLALPDL AEHFDRSAQD TAWVSALALA VQQAAS---- bmy_01775T0/1-471 AVNGLSYGLL RSLGLALPDL AEHFDRSAQD TAWVSALALA VQQAAS---- BACU001271/1-453 AVNGLSCGLL RSLGLALPDL AEHFDRSAQD TAWVSALALA VQQAASEGGP 201 250 ENSBTAP00000054836/1-574 --PVGSALST RWGARPVVMV GGVLTSLGFV FSAFAHSLLH LYLGLGVLAG ENSP00000310490/1-471 --PVGSALST RWGARPVVMV GGVLASLGFV FSAFASDLLH LYLGLGLLAG ENSTTRP00000003754/1-469 --PVGSALST RWGARPVVMV GGVLTSLGFV FSAFARSLLH LYLGLGVLAG bmy_01775T0/1-471 --PVGSALST RWGARPVVMV GGVLTSLGFV FSASARSLLH LYLGLGVLAG BACU001271/1-453 RGPVGSALST RWGARPVVMV GGVLTSLGFV FSAFARSLLH LYLGLGVLAG 251 300 ENSBTAP00000054836/1-574 SGWALVFAPA LGTVSRYFSR RRVLAVGLAL MGNGASSLLL APALQLLLDN ENSP00000310490/1-471 FGWALVFAPA LGTLSRYFSR RRVLAVGLAL TGNGASSLLL APALQLLLDT ENSTTRP00000003754/1-469 SGWALVFAPA LGTLSRYFSR RRVLAVGLAL TGNGASSLLL APALQLLLDN bmy_01775T0/1-471 SGWALVFAPA LGTLSRYFSR RRVLAVGLAL TGNGASSLLL APALQLLLDN BACU001271/1-453 SGWALVFAPA LGTLSRYFSR RRVLAVGLAL TGNGASSLLL APALQLLLDN 301 350 ENSBTAP00000054836/1-574 FGWRGALLLL GAVTLHLTPC GALLRPLALP GDPLALPRSP LAALGLGLFR ENSP00000310490/1-471 FGWRGALLLL GAITLHLTPC GALLLPLVLP GDPPAPPRSP LAALGLSLFT ENSTTRP00000003754/1-469 FGWRGALLLL GSITLHLTPC GALLRPLALP GDPLGPPRSP LAALGLDLFT bmy_01775T0/1-471 FGWRGALLLL GAITLHLTPC GALLRPLALP GDPLGPPRSP LAALGLGLFT BACU001271/1-453 FGWRGALLLL GAITLHLTPC GALLRPLALP GDPLGPPRSP LAALGLGLFT 351 400 ENSBTAP00000054836/1-574 RPAFLVLTLG TALVGVGYFI PYVHLAPHAL DRGLGGYGAA LVVAAAAVGD ENSP00000310490/1-471 RRAFSIFALG TALVGGGYFV PYVHLAPHAL DRGLGGYGAA LVVAVAAMGD ENSTTRP00000003754/1-469 RRAFLVFALG TALVGGGYFV PYVHLAPHAL DRGLGGYGAV LVVTVAAVGD bmy_01775T0/1-471 RRAFLVFALG TALVGGGYFV PYVHLAPHAL DRGLGGYGAV LVVAVAAVGD BACU001271/1-453 RRAFLVFALG TALVGGGYFV PYVHLAPHAL DRGLGGYGAV LVVAVAAVGD 401 450 ENSBTAP00000054836/1-574 IGARLPCGWL ADQGWVPLPR LLTIFGALTG LGLLAVGLVP VVGNEDSWGG ENSP00000310490/1-471 AGARLVCGWL ADQGWVPLPR LLAVFGALTG LGLWVVGLVP VVGGEESWGG ENSTTRP00000003754/1-469 AGARLLCGWL ADQGWVPLPR LLAMFGALTG LGLLAVGLVP VVGNEESWGG bmy_01775T0/1-471 AGARLLCGWL ADQGWVPLPR LLAMFGALTG LGLLAVGLVP VVGNEESWGG BACU001271/1-453 AGARLLCGWL ADQGWVPLPR LLAMFGALTG LGLLAVGLVP VVGNEESWGG 451 500 ENSBTAP00000054836/1-574 PLLAAAGVYG LSAGSFAPLT FCVLPELVGI GNVVQATGLV MLLLSLGGLL ENSP00000310490/1-471 PLLAAAVAYG LSAGSYAPLV FGVLPGLVGV GGVVQATGLV MMLMSLGGLL ENSTTRP00000003754/1-469 PLLAAAGAYG LSAGSYAPLV FGVLPGLVGV GGVVQATGLV MMLMXXXXXX bmy_01775T0/1-471 PLLAAAGAYG LSAGSYAPLV FGVLPGLVGI GGVVQATGLV MMLMSLGGLL BACU001271/1-453 PLLAAAGAYG LSAGSYAPLV FGVLPGLVGI GGVVQATGLV MMLMSLGGLL 501 550 ENSBTAP00000054836/1-574 GPPLSGFLKD ETGDFTASFL MCGSFVLSGS FIYLGLPKAL PSCRQASRPG ENSP00000310490/1-471 GPPLSGFLRD ETGDFTASFL LSGSLILSGS FIYIGLPRAL PSCGPASPPA ENSTTRP00000003754/1-469 XXXXXXFLRD ETGDFTASFL VCSSFILSGS FIYMGLPSAL PSCRPASRPG bmy_01775T0/1-471 GPPLSGFLRD ETGDFTASFL VCGSFILSGS FIYMGLPSAL PSCRPASHPG BACU001271/1-453 GPPLSGFLRD ETGDFTASFL VCGSFILSGS FIYVGLPSAL PSCRPASHPG 551 600 ENSBTAP00000054836/1-574 TPPPEMGELL PVPQVALLSP GDPHSTLDTT C ENSP00000310490/1-471 TPPPETGELL PAPQAVLLSP GGPGSTLDTT C ENSTTRP00000003754/1-469 TPPPERGELL PSPQVALLPP GGPHSTLDST C bmy_01775T0/1-471 TAPPERGELL PDPQVALLPP GGPHSTLDTT C BACU001271/1-453 TAPPERGELL PDPQVALLPP GGPHSTLDTT C