KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:25:05 2014 Check: 00 .. Name: ENSBTAP00000054845/1-429 Len: 436 Check: 5814 Weight: 1.00 Name: ENSP00000377303/1-427 Len: 436 Check: 1120 Weight: 1.00 Name: bmy_18749T0/1-392 Len: 436 Check: 1459 Weight: 1.00 Name: ENSTTRP00000007055/1-424 Len: 436 Check: 3664 Weight: 1.00 // 1 50 ENSBTAP00000054845/1-429 MSRGLRVWQD MEKEQETLRA WKDRVARELD RVVAFWLDHS HDQEQGGFFT ENSP00000377303/1-427 MSKGLPARQD MEKERETLQA WKERVGQELD RVVAFWMEHS HDQEHGGFFT bmy_18749T0/1-392 ---------- MEKERETLQA WKERVGHELD VVVAFWLEHS HDQEHGGFFT ENSTTRP00000007055/1-424 TSGSLRVWQD MEKERETLQA WKERVEHELD VVVAFWLEHS HDQEHGGFFT 51 100 ENSBTAP00000054845/1-429 CLGRDGQVYD DLKYVWLQGR QTGQGSRAHR PQRAFQRDTF LTT---GGEF ENSP00000377303/1-427 CLGREGRVYD DLKYVWLQGR QVWMYCRLYR TFERFRHAQL LDAAKAGGEF bmy_18749T0/1-392 CLGRDGQVYD DLKYVWLQGR QVWMYCRLYR KLERFRRPEL LNAAKAGGEF ENSTTRP00000007055/1-424 CLGRDGQVYD DLKYVWLQGR QVWMYCRLYR KLERFRRPEL LNAAKAGGEF 101 150 ENSBTAP00000054845/1-429 LLRYAQVAPP AKKCAFVLTR DGRPVKVQRT IFSECFYTMA MNELWRVTGD ENSP00000377303/1-427 LLRYARVAPP GKKCAFVLTR DGRPVKVQRT IFSECFYTMA MNELWRATGE bmy_18749T0/1-392 LLRYARVAPP AKKCAFVLTR DGRPVKVQRT IFSECFYTMA MNELWRVTGD ENSTTRP00000007055/1-424 LLRYARVAPP AKKCAFVLTR DGRPVKVQRT IFSECFYTMA MNELWRVTGD 151 200 ENSBTAP00000054845/1-429 ARYQNEAMEM MDQIVSWVRE DPSGLGRPQL PGAPASESMA VPMMLLNLVE ENSP00000377303/1-427 VRYQTEAVEM MDQIVHWVQE DASGLGRPQL QGAPAAEPMA VPMMLLNLVE bmy_18749T0/1-392 AQYQSEAVEM MDQIVHWVRE DPSGLGRPQL PGAPASESMA VPMMLLSLVE ENSTTRP00000007055/1-424 AQYQSEAVEM MDQIVHWVRE DPSGLGRPQL PGAPAAESMA VPMMLLSLVE 201 250 ENSBTAP00000054845/1-429 QLGEADEELA GISAELGDWC AQRILQHVQR GGQAVLENVS EDGEELSGCL ENSP00000377303/1-427 QLGEADEELA GKYAELGDWC ARRILQHVQR DGQAVLENVS EGGKELPGCL bmy_18749T0/1-392 QLGEADEELA GSYAELGDWC ARRILRHVQR GGQAVLENVS EDGEELSGCL ENSTTRP00000007055/1-424 QLGEADDELA GSYAELGDWC ARRILRHVQR GGQAVLENVA EDGEGLSGCL 251 300 ENSBTAP00000054845/1-429 GRHQNPGHAL EAGWFLLRYA IQRGDAKLRA HVIDKFLLLP FHSGWDPEHG ENSP00000377303/1-427 GRQQNPGHTL EAGWFLLRHC IRKGDPELRA HVIDKFLLLP FHSGWDPDHG bmy_18749T0/1-392 GRHQNPGHAL EAGWFLLRHT IRRGDPKLRA H--------- ---------- ENSTTRP00000007055/1-424 GRHQNPGHAL EAGWFLLRHA VRRGDPKLRA HVIDKFLLLP FRSGWDPDHG 301 350 ENSBTAP00000054845/1-429 GLFYFQDADG LCPTQLEWAM KLWWPHSEAM IAFLMGYSET GDPALLRIFY ENSP00000377303/1-427 GLFYFQDADN FCPTQLEWAM KLWWPHSEAM IAFLMGYSDS GDPVLLRLFY bmy_18749T0/1-392 ---------- -----LEWAM KLWWPHSEAM IAFLMGYSES GDSALLKVFY ENSTTRP00000007055/1-424 GLFYFQDADG LCPTQLEWAM KLWWPHSEAM IAFLMGYSES GDSALLNIFY 351 400 ENSBTAP00000054845/1-429 QVAEYTFHRF RDPEYGEWFG YLNRDGKVAL TIKGGPFKGC FHVPRCLAMC ENSP00000377303/1-427 QVAEYTFRQF RDPEYGEWFG YLSREGKVAL SIKGGPFKGC FHVPRCLAMC bmy_18749T0/1-392 QVAEYTFRQF RDPEYGEWFG YLNREGKVAL TIKGGPFKGC FHVPRCLAMC ENSTTRP00000007055/1-424 QVAEYT---F RDPEYGDWFA YLNREGKIAL TIKGGPFKGC FHVPRCLAMC 401 450 ENSBTAP00000054845/1-429 EEMLNNLLSR LAPASALS-- --TRSPPAGP TRPGAE ENSP00000377303/1-427 EEMLGALLSR PAPAPSPA-- -------PTP ACRGAE bmy_18749T0/1-392 EEMLSDLLSR LAPASAPAAA LSARSPPADP ARRGAE ENSTTRP00000007055/1-424 EEMLSDLPSR LAPASAPA-- -------PDP ARRGAE