KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:25:06 2014 Check: 00 .. Name: ENSBTAP00000054851/1-1595 Len: 2108 Check: 7388 Weight: 1.00 Name: ENSTTRP00000004993/1-2101 Len: 2108 Check: 5695 Weight: 1.00 Name: bmy_20520T0/1-929 Len: 2108 Check: 4112 Weight: 1.00 Name: BACU001640/1-1327 Len: 2108 Check: 7059 Weight: 1.00 // 1 50 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 MNSVAGNKER LAVSTRGKKY GVNEVCSPTK PAAPFSPESW YRKAYEESRA bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---MGNKTPT AHNKPCRGLK PYPDSQSEAW ---------- 51 100 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 GSRPTPEGAG SALGSSGTPS PGSGTSSPSS FTGSPGPASP GIGTSSPGSL bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 GGSPGFGTGL PGGSRGSSPG SDRVCECNXX XXXXXXXXXX XXXXRPCPPD bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 AAFSAVIHDK LQVPNTIRKA WNDRDNRCDI CATHLNQLKQ EAIQMVLTLE bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 QAAGSEHFDG SPGSPPALSN IPTPVGSRHV GGLQQPRDWA FVPTSYASSN bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 YTALITSKHS SKPSSLGVSN GVEKKSGSPT HQAKVSLQMA TSPSNGNILN bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- --PANAALIH 301 350 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 SVAIQAHQYL DGTWSLSRAN GVTLYPYQIS QLMTEPGREG LTEAALNRYN bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 FVG------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 ADKPSACSVP ASQASCVASE TSAGTSVAAS FFARAAQKLN LSSKKKKHRP bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ----QVKVML ENSTTRP00000004993/1-2101 STSSVTEPPL FATSFSGILQ TSPPPAPPCL LRAVNKVKDT PGLGKVKVML bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000054851/1-1595 RICSTLARDT SESSSFLKVD PRKKQITLYD PLACGGLNAF QKRGNQVPPK ENSTTRP00000004993/1-2101 RVCSTLARDT SESSSFLKVD PRKKQITLYD PLTCGGLNAF QKRGNQVPPK bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000054851/1-1595 MFAFDAVFPQ DASQAEVCAG TVAEVIQSVV NGADGCVFCF GHAKLGKSYT ENSTTRP00000004993/1-2101 MFAFDAVFPQ DASQAEVCAG TVAEVIQSVV NGADGCVFCF GHAKLGKSYT bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000054851/1-1595 MIGKDDSMQN LGIIPCAISW LFKLINERKE KTGARFSVRI SAVEVWGKEE ENSTTRP00000004993/1-2101 MIGKDDSMQN LGIIPCAISW LFKLINERKE KTGARFSVRI SAVEVWGKEE bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000054851/1-1595 NLRDLLSEVA TGSLQDGQSP GVYLCEDPIC GTQLQNQSEL RAPTAEKAAF ENSTTRP00000004993/1-2101 NLRDLLSEXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000054851/1-1595 FLDAAIASRR GNQQDCDEDD LRNSHMLFTL HIYQYRMEKS GKGGMSGGRS ENSTTRP00000004993/1-2101 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSGGRS bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000054851/1-1595 RLHLIDLGSC VKALSKNREG GSGLCLSLSA LGNVILALVN GSKHIPYKES ENSTTRP00000004993/1-2101 RLHLIDLGSC VKALSKNREG GSGLCLSLSA LGNVILALVN GSKHIPYKES bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- -------RES 751 800 ENSBTAP00000054851/1-1595 KLTMLLRESL GNVNCRTTMI AHISAAAGNY AETLSTIQIA SRVLRMKKKK ENSTTRP00000004993/1-2101 KLTMLLRESL GNVNCRTTMI AHISAAAGNY AETLSTIQIA SRVLRMKKKK bmy_20520T0/1-929 ---MLLRESL GNVNCRTTMI AHISAAAGNY AETLSTIQIA SRVLRMKKKK BACU001640/1-1327 KLTMLLRESL GNVNCRTTMI AHISAAAGNY AETLSTIQIA SRVLRMKKKK 801 850 ENSBTAP00000054851/1-1595 TKYTSSSSGG ESSCEEGRMR RPTQLRPFHA RAAVESDFPI PHLSSDPDYS ENSTTRP00000004993/1-2101 TKYTSSSSGG ESSCEEGRMR RPTQLRPFHA RAAVESDFPI PHLSSDPDYS bmy_20520T0/1-929 TKYTSSSSGG ESSCEEGRMR RPTQLRPFHA RAAVESDFAI PHLSSDPDYS BACU001640/1-1327 TKYTSSSSGG ESSCEEGRMR RPTQLRPFHA RAAVESDFAI PHLSSDPDYS 851 900 ENSBTAP00000054851/1-1595 SSSEQSCDTV IYIGPNGTAL SDKELTDNEG PPDFVPIVPA LQK-ARGDSR ENSTTRP00000004993/1-2101 SSSEQSCDTV IYIGPNGTAL SDKELTDNEG PPDFVPIVPA LQKAARGDSR bmy_20520T0/1-929 SSSEQSCDTV IYIGPNGTAL SDKELTDNEG PPDFVPIVPA LQKAARGDSR BACU001640/1-1327 SSSEQSCDTV IYVGPSGTAL SDKELTDNEG PPDFVPIVPA LQKAARGDSR 901 950 ENSBTAP00000054851/1-1595 STEAGEAGAS KSERDCLKCN TFAELQERLD CIDGSEEPSK FP-------- ENSTTRP00000004993/1-2101 SAEAGEAAAS KSERDCLKCN TFAELQERLD CIDGSEESST FPFEELPAQF bmy_20520T0/1-929 STEAGEAAAS KSERDCLKCN TFAELQERLD CIDGSEEPST FPFEELPAQF BACU001640/1-1327 PTEAGEAAAS KSERDCLKCN TFAELQERLD CIDGSEEPST FPFEELPAQF 951 1000 ENSBTAP00000054851/1-1595 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004993/1-2101 GAQQGSKSVP LSQAAGASPL CESDKEDDGS DSQLTAREGS EPPGSKVQGN bmy_20520T0/1-929 GAEQASMSVP LSQAAGASPL CESDEEDDGS DGQLTAREGS EPPGSEVQGN BACU001640/1-1327 GAEQASKSVP LSQAAGASPL CESDEEDDGS DGQLAAGEGS EPPGSEVQGS 1001 1050 ENSBTAP00000054851/1-1595 ---------L TNSPTPASPR SIPGSSSQHN SSQLAQSPSL RSSRESLNSC ENSTTRP00000004993/1-2101 -HSPVPAAWL TNSPTPASPR SIPGSGSQHG SSQLVQSPSL QSSRESLNSC bmy_20520T0/1-929 -HSPVPAAWL TNSPTPASPR SIPGSSSQHG SSQLVQSPSL QSSRESLNSC BACU001640/1-1327 RHSPVPAAWL TNSPTPASPR SIPGSSSQHG SSQLVQSPSL QSSRESLNSC 1051 1100 ENSBTAP00000054851/1-1595 GFVEGKPRPM GSPRLGIASL SKTSEYKPAS SPSQRCKVYT QKGVLPSPAP ENSTTRP00000004993/1-2101 GFVEGKPRPM GSPRLGIASL SKTSEYKPAS SPSQRCKVYT QKGVLPSPAP bmy_20520T0/1-929 GFVEGKPRPM GSPRLGIASL SKTSEYKPAS SPSQRCKVYT QKGVPPSPAP BACU001640/1-1327 GFVEGKPRPM GSPRLGIASL SKTSEYKPAS SPSQRCKVYT QKGVPPSPAP 1101 1150 ENSBTAP00000054851/1-1595 LPTLSKDSGI VSSESLLQPE VRTPPVGMSP QVLKKSMSTG SEGFPETPVD ENSTTRP00000004993/1-2101 LPTFSKDAGV VSSESLLQPE VRTPPVGMSP QVLKKSMSTG SEGFPETPVD bmy_20520T0/1-929 LPTFSKDAGV VSSESLLQPK VRTPPVGMSP QVLKKSMSTG SEGFPETPVD BACU001640/1-1327 LPTFSKDAGV VSSESLLQPK VRTPPVGMSP QVLKKSMSTG SEGFPETPVD 1151 1200 ENSBTAP00000054851/1-1595 DDHQAATSPD SKKEILSTTM VTVQQPLELN GEDELVFTLV EELTISGVLD ENSTTRP00000004993/1-2101 AERQAATSAD AKKEIRSTTM VTVQQPLELN GEDELVFTLV EELTISGVLG bmy_20520T0/1-929 AEHQAATSPD AKKEILSTTM VTVQQPLELN GEDELVFTLV EELTISGVLG BACU001640/1-1327 AEHQAATSPD AKKEILSTTM VTVQQPLELN GEDELVFTLV EELTISGVLG 1201 1250 ENSBTAP00000054851/1-1595 SGRPTSIISF NSDCSVQALA SGSRPVSIIG SISEDLECYS NVAPVSEVSI ENSTTRP00000004993/1-2101 GGRPTSIISF NSDCSVQALA SGSRPVSIIG SVSEDLECYS NVAPVSEVSI bmy_20520T0/1-929 GGRPTSIISF NSDCSVQALA SGSRPVSIIG SVSEDLECYS NVAPVSEVSI BACU001640/1-1327 GGRPTSIISF NSDCSVQALA SGSRPVSIIG SVSEDLECYS NVAPVSEVSI 1251 1300 ENSBTAP00000054851/1-1595 TQFLPLPKLN LDEKAREAGS RRSSISSWLS EMSTGSDGEQ PCHSFIAQAC ENSTTRP00000004993/1-2101 TQFLPLPKLN LDEKARETGS RRSSISSWLS EMSTGSDGEP PCHSFIAQTC bmy_20520T0/1-929 TQFLPLPKLN LEEKAREAGS RRSSISSWLS EMSTGSDSEP PCHSFIAQTC BACU001640/1-1327 TQFLPLPKLN LEEKAREAGS RRSSISSWLS EMSTGSDSEP PCHSFIAQTC 1301 1350 ENSBTAP00000054851/1-1595 FGHGEAMADP PASEFVGSIQ NTAVVCREKP KASPDNLLIL SEMGEDSFNK ENSTTRP00000004993/1-2101 FGHGEAMADP PASEFVSGTQ NTAVVCREKP KEGPDSLLLL SEMGDDSFNK bmy_20520T0/1-929 FGHGEAMADP PASEFVSGIQ NTAVVCREKP KAGPDNLLIL SEMGDDSFNK BACU001640/1-1327 FGHGEAMADP PASEFVSGIQ NTAVVCREKP KAGPDNLLIL SEMGDDSFNK 1351 1400 ENSBTAP00000054851/1-1595 AAPIKGCKIS TLGKAMVTIS NTASLSNCEG YIPMKTNITV YPCISMSPRN ENSTTRP00000004993/1-2101 ATPVKGCKIS TLGKAMVTIS NTASLSNCEG YIPMKTNITV YPCIAVSPRN bmy_20520T0/1-929 ATPIKGCKIS TLGKAMVTIS NTASLSNCEG YIPMKTNITV YPCIAVSPRN BACU001640/1-1327 ATPIKGCKIS TLGKAMVTIS NTASLSNCEG YIPMKTNITV YPCIAVSPRN 1401 1450 ENSBTAP00000054851/1-1595 VQEPEVSLAT VSSVPKAAQS QESKESGAKK EMKFEDPWLK REEEVKKENA ENSTTRP00000004993/1-2101 VQEPEASLAT VSSVPKAARS QESKESGAKK EMKFEDPWLK REEEVKKENA bmy_20520T0/1-929 VQEPEASLAT VSSVAKAARS QESKESGAKK EMKFEDPWLK REEEVKKENA BACU001640/1-1327 IQEPEASLAT VSSVPKAARS QESKESGAKK EMKFEDPWLK REEEVKKENA 1451 1500 ENSBTAP00000054851/1-1595 YPNEEGSRFE TATGPPKPEA RAEQDKKASP SDRLSNSSGE VSASPGADNF ENSTTRP00000004993/1-2101 YPHEAGMRHE TTPGPPKPEA RAEQDRKASP SDGLSSSSGE VSASPVADNF bmy_20520T0/1-929 CXPEAGIRHE TAXGPPKPEA RAXQDRKASP SDGLSSSGGE VSASPVADNF BACU001640/1-1327 CPPEAGIRHE TATGPPKPEA RADQDRKASP SDGLSSSGGE VSASPVADNF 1501 1550 ENSBTAP00000054851/1-1595 RRVVDGCEMA LPSVAAQSPV HLNKSLKSSS LPRAFQKASR QEELDSLFYH ENSTTRP00000004993/1-2101 RRVVDGCETA LPSVAAQSPV HLNKSLKSSS LPRAFQKASR QEEPDSLFSH bmy_20520T0/1-929 RRVVDGCEMA LPSVAAQSPV HLNKSLKSSS LPRAFQKASR QEEVDSLFSH BACU001640/1-1327 RRVVDGCEMA LPSVAAQSPV HLSKSLKSSS LPRAFQKASR QEEPDSLFSH 1551 1600 ENSBTAP00000054851/1-1595 CASETNGIGS ASSTQPSKAT LEKKVASPKH CVLARPKGTP PLPPVRKSSL ENSTTRP00000004993/1-2101 CPAETNGIGP ASSAQPSKAT LERKVASPKH CVLARPKGTP PLPPVRKSSL bmy_20520T0/1-929 CPAETNGIGP ASSTQPSKAT LERKVASPKH CVLARPKGTP PLPPVRKSSL BACU001640/1-1327 CPAETSGIGP ASSTQPSKAT LERKVASPKH CVLARPKGTP PLPPVRKSSL 1601 1650 ENSBTAP00000054851/1-1595 DQKNRASPQH SACSSSSSSP LNQPAPFLAS FPDEPSSKMK DASS-SSKLF ENSTTRP00000004993/1-2101 DQKNRASPQH SACSSNSSSP LNQPAPFSAS FPDEPSGKTK DAGSCSSKLF bmy_20520T0/1-929 DQKNRASPQH SACSSSSSSP LNQPAPFSAS FPDEPSGKMK DAGS-SSKLF BACU001640/1-1327 DQKNRASPQH SACSSSSSSP LNQPAPFSAS FLDEPSGKMK DAGS-SSKLF 1651 1700 ENSBTAP00000054851/1-1595 SAKLEQLASR TNSLGRTTVS HYECLSLERA ESLSSMSSRL HTGKDSTMPR ENSTTRP00000004993/1-2101 GAKLEQLASR TNSLGRTTVS HYECLSLERA ESLSSVSSRL HAGKDSTMPR bmy_20520T0/1-929 GAKLEQLASR TNSLGRTTVS HYECLSLERA ESLS------ ---------- BACU001640/1-1327 GAKLEQLASR TNSLGRTTVS HYECLSLERA ESLSSVSSRL HAGKDSTMPR 1701 1750 ENSBTAP00000054851/1-1595 TGRSPGRSAG ASPTNPGPTQ SAGASPKASQ SKISAVSKLL LASPKARSLS ENSTTRP00000004993/1-2101 TGRSPGRSAG ASPTNP---- --GASPKASQ SKISAVSKLL LASPKARSLS bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 TGRSPGRSAG ASPTNPGPAQ PAGASPKASQ SKISAVSKLL LASPKARSLS 1751 1800 ENSBTAP00000054851/1-1595 TSTTKTLSFS TKSLPQAVGQ SSGPPPGGKH MSWSTQSLSR SRGSGLASKL ENSTTRP00000004993/1-2101 TSTTKTLSFS TKSLPQAVGQ SSGPAPGGKH MSWSTQSLSR SRGSGLASKL bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 TSTTKTLSFS TKSLPQAVGQ SSGPPPGGKH I--------- ---------- 1801 1850 ENSBTAP00000054851/1-1595 PLRAVNGRIS ELLQGGAGGR GPPGRAGPEA EDRAIPTDER PPPTAPLPSP ENSTTRP00000004993/1-2101 PLRAVNGRIS ELLQGGAGPR GPPARAGPEA EERAATADER PPPAVPLPSP bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ---------- ---------- ---------- ---------- ---------- 1851 1900 ENSBTAP00000054851/1-1595 YSKITPPRRP HRCSSGHGSD NSSVLSGELP PAMGKTALFY HSGGSSGYES ENSTTRP00000004993/1-2101 YSKITPPRRP HRCCSGHGSD NSSVLSGELP PAMGKTALFY HSGGSSGYES bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 --KITPPRRP HRCSSGHGSD NSSVLSGELP PAMGKTALFY HSGGSSGYES 1901 1950 ENSBTAP00000054851/1-1595 MMRDSEATGS ASSTQDSMSE NSSSVGGRCR SLKAPKKRAN SGSQRRRLIP ENSTTRP00000004993/1-2101 MMRDSEATGS ASSAQDSMSE NSSSVGGRCR SLKAPKKRAN SXXXXXXXXX bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 MMRDSEATGS ASSAQDSMSE NSSSVGGRCR SLKAPKKRAN SGSQRRRLIP 1951 2000 ENSBTAP00000054851/1-1595 ALSLDTPSPV RKPTNSAGIR GVDGPLRSTQ RGLGEPFEIK VYEIDDVERL ENSTTRP00000004993/1-2101 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 ALSLDTPSPV RKPANSAGVR WVDGPLRSTQ RGLGEPFEIK VYEIDDVERL 2001 2050 ENSBTAP00000054851/1-1595 QRRRGGSSKE VMCFNAKLKI LEHRQQRIAE VRAKYEWLMK ELETTKQYLM ENSTTRP00000004993/1-2101 XXXXXXXXXE VMCFNAKLKI LEHRQQRIAE VRAKYEWLMK ELETTKQYLM bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 QRRRGGSSKE VMCFNAKLKI LEHRQQRIAE VRAKYEWLMK ELETTKQYLM 2051 2100 ENSBTAP00000054851/1-1595 LDPNKWLSEF DLEQVLELDS LEYLEALECV TERLESRVNF CKAHLMMITC ENSTTRP00000004993/1-2101 LDPNKWLSEF DLEQVLELDS LEYLEALECV TERLESRVNF CKAHLMMITC bmy_20520T0/1-929 ---------- ---------- ---------- ---------- ---------- BACU001640/1-1327 LDPNKWLSEF DLEQVLELDS LEYLEALECV TERLESRVNF CKAHLMMITC 2101 2150 ENSBTAP00000054851/1-1595 FDITSRRR ENSTTRP00000004993/1-2101 FDITSRRR bmy_20520T0/1-929 -------- BACU001640/1-1327 FDITSRRR