KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:13 2014 Check: 00 .. Name: ENSTTRP00000004114/1-956 Len: 1003 Check: 927 Weight: 1.00 Name: ENSBTAP00000054923/1-958 Len: 1003 Check: 9633 Weight: 1.00 Name: ENSP00000386458/1-930 Len: 1003 Check: 2651 Weight: 1.00 Name: BACU010043/1-774 Len: 1003 Check: 1631 Weight: 1.00 Name: bmy_10689T0/1-928 Len: 1003 Check: 3266 Weight: 1.00 // 1 50 ENSTTRP00000004114/1-956 -MRPGTGAER GGLMVSEMES HPPSRGPGDG ERRLSGSSLC SSSWVSADGF ENSBTAP00000054923/1-958 -MRPGTGAER GGLMVSEMEN HPPSRGLGDG ERRLSGSSLC SSSWVSADGF ENSP00000386458/1-930 ---MCSGSGR RRSSLSPT-- MRPGTGAERG ---------- --------GL BACU010043/1-774 MLRRDVSSDV QRKALDKM-- FQKQKYINKP DRKKLAAKL- --------GL bmy_10689T0/1-928 MLRRDVSSDV QRKALDKM-- FQKQKYINKP DRKKLAAKL- --------GL 51 100 ENSTTRP00000004114/1-956 LRRRPSMGHP GMHYAPMGMH PMGQRANMPP VPHGMMPQMM PPMGGPPMGQ ENSBTAP00000054923/1-958 LRRRPSMGHP GMHYAPMGMH PMGQRANMPP VPHGMMPQMM PPMGGPPMGQ ENSP00000386458/1-930 M-----MGHP GMHYAPMGMH PMGQRANMPP VPHGMMPQMM PPMGGPPMGQ BACU010043/1-774 KDSR--MGHP GMHYAPMGMH PMGQRANMPP VPHGMMPQMM PPMGGPPMGQ bmy_10689T0/1-928 KDSR--MGHP GMHYAPMGMH PMGQRANMPP VPHGMMPQMM PPMGGPPMGQ 101 150 ENSTTRP00000004114/1-956 MPGMMSSVMP GMMMSHMSQA SMQPALPPGV NNMDVAAGMY TIYKSMWTEH ENSBTAP00000054923/1-958 MPGMMSSVMP GMMMSHMSQA SMQPALPPGV NNMDVAAGTT SGAKSMWTEH ENSP00000386458/1-930 MPGMMSSVMP GMMMSHMSQA SMQPALPPGV NSMDVAAGTA SGAKSMWTEH BACU010043/1-774 MPGMMSSVMP GMMMSHMSQA SMQPALP--- ---------- ---KSMWTEH bmy_10689T0/1-928 MPGMMSSVMP GMMMSHMSQA SMQPALP--- ---------- ---KSMWTEH 151 200 ENSTTRP00000004114/1-956 KSPDGRTYYY NTETKQSTWE KPDDLKTPAE QLLSKCPWKE YKSDSGKPYY ENSBTAP00000054923/1-958 KSPDGRTYYY NTETKQSTWE KPDDLKTPAE QLLSKCPWKE YKSDSGKPYY ENSP00000386458/1-930 KSPDGRTYYY NTETKQSTWE KPDDLKTPAE QLLSKCPWKE YKSDSGKPYY BACU010043/1-774 KSPDGRTYYY NTETKQSTWE KPDDLKTPAE QLLSKCPWKE YKSDSGKPYY bmy_10689T0/1-928 KSPDGRTYYY NTETKQSTWE KPDDLKTPAE QLLSKCPWKE YKSDSGKPYY 201 250 ENSTTRP00000004114/1-956 YNSQTKESRW AKPKELEDLE GYQNTIVAGS LITKSNLHGM FAELKH--SK ENSBTAP00000054923/1-958 YNSQTKESRW AKPKELEDLE GYQNTIVAGS LITKSNLHAM IKAEESRYSK ENSP00000386458/1-930 YNSQTKESRW AKPKELEDLE GYQNTIVAGS LITKSNLHAM IKAEES--SK BACU010043/1-774 YNSQTKESRW AKPKELEDLE ---------- --------AM IKAEES--S- bmy_10689T0/1-928 YNSQTKESRW AKPKELEDLE GYQNTIVAGS LITKSNLHAM IKAEES--SK 251 300 ENSTTRP00000004114/1-956 QEEC-TTSTA PVPTTEIPTT MSTMAAAEAA AAVVAAAAAA AAAAAAANAS ENSBTAP00000054923/1-958 QEECTTTSAA PVPTTEIPTT MSTMAAAEAA AAVVAAAAAA AAAAAAANAS ENSP00000386458/1-930 QEECTTTSTA PVPTTEIPTT MSTMAAAEAA AAVVAAAAAA AAAAAAANAN BACU010043/1-774 ---------- ---------- ---------- ---------- ---------- bmy_10689T0/1-928 QEEC-TTSTA PVPTTEIPTT MSTMAAAEAA AAVVAAAAAA AAAAAAANAS 301 350 ENSTTRP00000004114/1-956 ASTSASSTVG GTVPVVPEPE VTSIVATVVD NENTVTISTE EQAQLTSTPA ENSBTAP00000054923/1-958 ASTSASSTVS GTVPVVPEPE VTSIVATVVD NENTVTISTE EQAQLTSTPS ENSP00000386458/1-930 ASTSASNTVS GTVPVVPEPE VTSIVATVVD NENTVTISTE EQAQLTSTPA BACU010043/1-774 ---------- ---------- ---------- ---------- ---------- bmy_10689T0/1-928 ASTSASSTVG GTVPVVPEPE VTSIVATVVD NENTVTISTE EQAQLTSTPA 351 400 ENSTTRP00000004114/1-956 VQDQSVEVSS NTGEETSKQE TVADFTPKKE EEESQPAKKT YTWNTKEEAK ENSBTAP00000054923/1-958 VQDQS-EVSS NTGEETSKQE TVADFTPKKE EEESQPAKKT YTWNTKEEAK ENSP00000386458/1-930 IQDQSVEVSS NTGEETSKQE TVADFTPKKE EEESQPAKKT YTWNTKEEAK BACU010043/1-774 ---------- ---------- ----FTPKKE EEESQPAKKT YTWNTKEEAK bmy_10689T0/1-928 VQDQSVEVSS NTGEETSKQE TVADFTPKKE EEESQPAKKT YTWNTKEEAK 401 450 ENSTTRP00000004114/1-956 QAFKELLKEK RVPSNASWEQ AMKMIINDPR YSALAKLSEK KQAFNAYKVQ ENSBTAP00000054923/1-958 QAFKELLKEK RVPSNASWEQ AMKMIINDPR YSALAKLSEK KQAFNAYKVQ ENSP00000386458/1-930 QAFKELLKEK RVPSNASWEQ AMKMIINDPR YSALAKLSEK KQAFNAYKVQ BACU010043/1-774 QAFKELLKEK RVPSNASWEQ AMKMIINDP- ---------- ---------- bmy_10689T0/1-928 QAFKELLKEK RVPSNASWEQ AMKMIINDPR YSALAKLSEK KQAFNAYKVQ 451 500 ENSTTRP00000004114/1-956 TEKEEKEEAR SKYKEAKESF QRFLENHEKM TSTTRYKKAE QMFGEMEVWN ENSBTAP00000054923/1-958 TEKEEKEEAR SKYKEAKESF QRFLENHEKM TSTTRYKKAE QMFGEMEVWN ENSP00000386458/1-930 TEKEEKEEAR SKYKEAKESF QRFLENHEKM TSTTRYKKAE QMFGEMEVWN BACU010043/1-774 ---------- ---------- ---------- ----RYRKAE QMFGEMEVWN bmy_10689T0/1-928 TEKEEKEEAR SKYKEAKESF QRFLENHEKM TSTTRYKKAE QMFGEMEVWN 501 550 ENSTTRP00000004114/1-956 AISERDRLEI YEDVLFFLSK KE-------- ---------- ---------- ENSBTAP00000054923/1-958 AISERDRLEI YEDVLFFLSK KE-------- ---------- ---------- ENSP00000386458/1-930 AISERDRLEI YEDVLFFLSK KE-------- ---------- ---------- BACU010043/1-774 AISERDRLEI YEDVLFFLSK KEKCLQCIVV RGEILRGGEG GGIPALEERL bmy_10689T0/1-928 AISERDRLEI YEDVLFFLSK KE-------- ---------- ---------- 551 600 ENSTTRP00000004114/1-956 ---------- -----KEQAK QLRKRNWEAL KNILDNMANV TYSTTWSEAQ ENSBTAP00000054923/1-958 ---------- -----KEQAK QLRKRNWEAL KNILDNMANV TYSTTWSEAQ ENSP00000386458/1-930 ---------- -----KEQAK QLRKRNWEAL KNILDNMANV TYSTTWSEAQ BACU010043/1-774 KKKFEGKSQA GKSTGKEQAK QLRKRNWEAL KNILDNMANV TYSTTWSEAQ bmy_10689T0/1-928 ---------- -----KEQAK QLRKRNWEAL KNILDNMANV TYSTTWSEAQ 601 650 ENSTTRP00000004114/1-956 QYLMDNPTFA EDEELQNMDK EDALICFEEH IRALEKEEEE EKQKSLLRER ENSBTAP00000054923/1-958 QYLMDNPTFA EDEELQNMDK EDALICFEEH IRALEKEEEE EKQKSLLRER ENSP00000386458/1-930 QYLMDNPTFA EDEELQNMDK EDALICFEEH IRALEKEEEE EKQKSLLRER BACU010043/1-774 QYLMDNPTFA EDEELQNMDK EDALICFEEH IRALEKEEEE EKQKSLLRER bmy_10689T0/1-928 QYLMDNPTFA EDEELQNMDK EDALICFEEH IRALEKEEEE EKQKSLLRER 651 700 ENSTTRP00000004114/1-956 RRQRKNRESF QIFLDELHEH GQLHSMSSWM ELYPTIXXXX XXXXXXXXXX ENSBTAP00000054923/1-958 RRQRKNRESF QIFLDELHEH GQLHSMSSWM ELYPTISSDI RFTNMLGQPG ENSP00000386458/1-930 RRQRKNRESF QIFLDELHEH GQLHSMSSWM ELYPTISSDI RFTNMLGQPG BACU010043/1-774 RRQRKNRESF QIFLDELHEH GQLHSMSSWM ELYPTISSDI RFTNMLGQPG bmy_10689T0/1-928 RRQRKNRESF QIFLDELHEH GQLHSMSSWM ELYPTISSDI RFTNMLGQPG 701 750 ENSTTRP00000004114/1-956 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000054923/1-958 STALDLFKFY VEDLKARYHD EKKIIKDILK DKGFVVEVNT TFEDFVAIIS ENSP00000386458/1-930 STALDLFKFY VEDLKARYHD EKKIIKDILK DKGFVVEVNT TFEDFVAIIS BACU010043/1-774 STALDLFKFY VEDLKARYHD EKKIIKDILK DKGFVVEVNT TFEDFVAIIS bmy_10689T0/1-928 STALDLFKFY VEDLKARYHD EKKIIKDILK DKGFVVEVNT TFEDFVAIIS 751 800 ENSTTRP00000004114/1-956 XXXXXXXXXX XXXXXXXXXL LEKAEARERE REKEEARKMK RKESAFKSML ENSBTAP00000054923/1-958 STKRSTTLDA GNIKLAFNSL LEKAEARERE REKEEARKMK RKESAFKSML ENSP00000386458/1-930 STKRSTTLDA GNIKLAFNSL LEKAEARERE REKEEARKMK RKESAFKSML BACU010043/1-774 STKRSTTLDA GNIKLAFNSL LEKAEARERE REKEEARKMK RKESAFKSML bmy_10689T0/1-928 STKRSTTLDA GNIKLAFNSL LEKAEARERE REKEEARKMK RKESAFKSML 801 850 ENSTTRP00000004114/1-956 KQATPPIELD AVWEDIRERF VKEPAFEDIT LESERKRIFK DFMHVLEHEC ENSBTAP00000054923/1-958 KQATPPIELD AVWEDIRERF VKEPAFEDIT LESERKRIFK DFMHVLEHEC ENSP00000386458/1-930 KQAAPPIELD AVWEDIRERF VKEPAFEDIT LESERKRIFK DFMHVLEHEC BACU010043/1-774 KQATPPIELD AVWEDIRERF VKEPAFEDIT LESERKRIFK DFMHVLEHEC bmy_10689T0/1-928 KQATPPIELD AVWEDIRERF VKEPAFEDIT LESERKRIFK DFMHVLEHEC 851 900 ENSTTRP00000004114/1-956 QHHHSKNKKH SKKSKKHHRK RSRSRSGSDS DDDDSHSKKK RQRSESRSAS ENSBTAP00000054923/1-958 QHHHSKNKKH SKKSKKHHRK RSRSRSGSDS DDDDSHSKKK RQRSESRSAS ENSP00000386458/1-930 QHHHSKNKKH SKKSKKHHRK RSRSRSGSDS DDDDSHSKKK RQRSESRSAS BACU010043/1-774 QHHHSKNKKH SKKSKKHHRK RSRSRSGSDS DDDDSHSKKK RQRSESRSAS bmy_10689T0/1-928 QHHHSKNKKH SKKSKKHHRK RSRSRSGSDS DDDDSHSKKK RQRSESRSAS 901 950 ENSTTRP00000004114/1-956 EHSSSAESER SYKKSKKHKK KSKKRRHKSD SPESDAEREK DKKEKDRESE ENSBTAP00000054923/1-958 EHSSSAESER SYKKSKKHKK KSKKRRHKSD SPESDAEREK DKKEKDREGE ENSP00000386458/1-930 EHSSSAESER SYKKSKKHKK KSKKRRHKSD SPESDAEREK DKKEKDRESE BACU010043/1-774 EHSSSAESER SYKKSKKHKK KSKKRRHKSD SPESDAEREK DKKEKDRESE bmy_10689T0/1-928 EHSSSAESER SYKKSKKHKK KSKKRRHKSD SPESDAEREK DKKEKDRESE 951 1000 ENSTTRP00000004114/1-956 KDRTRQRSES KHKSPKKKTG KDSGNWDTSG SELSEGELEK RRRTLLEQLD ENSBTAP00000054923/1-958 KDRTRQRSES KHKSPKKKTG KDSGNWDTSG SELSEGELEK RRRTLLEQLD ENSP00000386458/1-930 KDRTRQRSES KHKSPKKKTG KDSGNWDTSG SELSEGELEK RRRTLLEQLD BACU010043/1-774 KDRTRQRSES KHKSPKKKTG KDSGNWDTSG SELSEGELEK RRRTLLEQLD bmy_10689T0/1-928 KDRTRQRSES KHKSPKKKTG KDSGNWDTSG SELSEGELEK RRRTLLEQLD 1001 1050 ENSTTRP00000004114/1-956 DDQ ENSBTAP00000054923/1-958 DDQ ENSP00000386458/1-930 DDQ BACU010043/1-774 DDQ bmy_10689T0/1-928 DDQ