KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:25:14 2014 Check: 00 .. Name: ENSBTAP00000054938/1-673 Len: 756 Check: 8465 Weight: 1.00 Name: ENSP00000394472/1-712 Len: 756 Check: 1308 Weight: 1.00 Name: bmy_17551T0/1-596 Len: 756 Check: 1366 Weight: 1.00 Name: BACU017249/1-720 Len: 756 Check: 2090 Weight: 1.00 // 1 50 ENSBTAP00000054938/1-673 ---------- ---------- ---------- ---------- ---------- ENSP00000394472/1-712 ---------- ---------- --MCSPASPK ILYRNPRFLR LAFLQLHHQQ bmy_17551T0/1-596 ---------- ---------- --MCSPASPK ILYRNPRFLR LAFLQLHHQQ BACU017249/1-720 MGDKVRLEPS RGLLLHYAWG ALSGAEAIRS LLKGKPQF-D VNCSELQCHL 51 100 ENSBTAP00000054938/1-673 ---------- ---GEAVPAH CCILSACSPF FTERLEREKP AQGRKVVLEL ENSP00000394472/1-712 QSDVFCDVLL QAEGEAVPAH CCILSACSPF FTERLERERP AQGGKVVLEL bmy_17551T0/1-596 QSGVFCDVLL QAEGEAVPAH CCILSACSPF FTERLERERP AQGRKVVLEL BACU017249/1-720 TENCVPEKEH RLCSEAVPAH CCILSACSPF FTERLERERP AQGRKVVLEL 101 150 ENSBTAP00000054938/1-673 GGLKIRTLRK LVDFLYTSEM ELSGEEVQDV LSAARQLQVS ELESLQLEGG ENSP00000394472/1-712 GGLKISTLRK LVDFLYTSEM EVSQEEAQDV LSAARQLRVS ELESLQLEGG bmy_17551T0/1-596 GGLKIRTLRK LVDFLYTSEM EVSREEAQDV LSAARQLRVS ELESLQLEGG BACU017249/1-720 GGLKIRTLRK LVDFLYTSEM EVSREEAQDV LSAARQLRVS ELESLQLEGG 151 200 ENSBTAP00000054938/1-673 KLVKVPQGRR LNRECLQPPS PAPISARVVA SSRRPRAPLP VTQAPCPLRA ENSP00000394472/1-712 KLVKAPQGRR LNRECLQPTS AAPISARVVT PSHHPHTPLP TNQTPCPLGA bmy_17551T0/1-596 KLVKAPQGRR LNRECLQPPS AAAISARVVA SIRRPRTPLP VTQTPCPLGA BACU017249/1-720 KLVKTPQGRR LNRECLQPPS AAAISARVVA SIRRPRTPLP VTQTPCPLGG 201 250 ENSBTAP00000054938/1-673 ARLKSLGKEE GPPEKNHQEN PENSSGALLL KRKARACPAP QEPSASPSSH ENSP00000394472/1-712 IRLKSLGKEE GPQE-NNRQN ADNLSGTLLL KRKARACPTP QEKNSSPSSH bmy_17551T0/1-596 VRLKSSGKEE GAQEKNHRQN TENLSGTLLL KRKARACPTP QEKSSSPSSH BACU017249/1-720 VRPKSSGKEE GAQEKNSRQN AENLSGTLLL KRKARACPTP QEKSSSPSSH 251 300 ENSBTAP00000054938/1-673 SQGPKENRSD PALGPISLSP PSLYPCVDER LLPRKIKLSR SKPSPDVCTS ENSP00000394472/1-712 SQEPRENKND TALDPTVLSP PSLYPSVDKH LLPRKIRLSR SKPSPGICTS bmy_17551T0/1-596 SQGPKENKSY PALGPTALSP PSLYPSVDER LLPRKIRLSR AKLSPDVCTS BACU017249/1-720 SQGPKENKSY PALGPTALSP PSLYPSVDER LLPRKIRLSR AKLSPDVCTS 301 350 ENSBTAP00000054938/1-673 KPASLLSGAS SVPTAPGRRL WRQKSTNKEA PEDKQKTGRA SPLRSSPSAS ENSP00000394472/1-712 KPSSILSGSS SVPATPGRRL WRQRSVNKET PEDKPKPGRA SPLQSTPNPS bmy_17551T0/1-596 KPASLLSGPS SVPPAPGRRL WRQKSINKEA PEDEQKTGRT SPLQSTPSQS BACU017249/1-720 EPASLLSGPS SVPPAPGRRL WRQKSINKEA PEDEQKTGRT SPLQSTPSQS 351 400 ENSBTAP00000054938/1-673 GLGKTAGNKK WSPEATHPHP DSAEEEQIGR VKLRKIVNGT CWEVVQEPPL ENSP00000394472/1-712 GLGKTGGSRK RSPEVRAPNS DSAEEGQVGR VKLRKIVNGT CWEVVQETPL bmy_17551T0/1-596 GLGKSGGNKK RSPEVRAPNS DSAEEGQVGR VKLRKIVNGT CWEVVQEPPL BACU017249/1-720 GLVKSGGNKK RSPEVRASNP DSAEEGQVGR VKLRKIVNGT CWE------- 401 450 ENSBTAP00000054938/1-673 RISQDSPQIP EL-KDSGEPL GTQPSSGKEQ DLSSARTNLC EDSPVCSRLQ ENSP00000394472/1-712 KNTQDSPQIP DPGGDFQEPS GTQPFSSNEQ EMSPTRTELC QDSPMCTKLQ bmy_17551T0/1-596 KSSQDSPQIP EP-EDSEEPP GTQPSSGNKQ EMSSARTDLC EDSPTRSRLQ BACU017249/1-720 ---------- ---------- ---PSSGNEQ EVSSASTDLC EDFPTCSRLQ 451 500 ENSBTAP00000054938/1-673 DVLLSAGSSP EHPVEKSEFG SSPELVGKEP RLDMGCRESY TFNPALLGQP ENSP00000394472/1-712 DILVSASHSP DHPVVKSEFE SSPELVEKEP MLAIDCREPY AFDTALLEQP bmy_17551T0/1-596 GILLSASHSP DNPVVKSEFG SSPELIGKAP GLDIDCREPY AFDTALLGQP BACU017249/1-720 GIL-SAGHSP YNPVVKSEFG SSPELIGEAP GLDIDCREPY AFDTALLGQP 501 550 ENSBTAP00000054938/1-673 CEAEEYRITS AAATSELEEI LDFMLCGSDI EPPMESLESP RAEGCRTPSY ENSP00000394472/1-712 CEAEEYRITS AAATSELEEI LDFMLCGSDI EPPIGSLESP GAEGCRTPTY bmy_17551T0/1-596 CEAEEYRITS AAATSELEEI LDFMLCGSDI EPPIGSLESP RAEGCRTPSY BACU017249/1-720 CEAEEYRITS AAAASELEEI LDFVLCGSDM EPPIGSLQSP RAEGCRTPSY 551 600 ENSBTAP00000054938/1-673 HLTETGKTWI EGEEWCLPDV ELWPRELTGL EKEPLILPSE NKEPAEPFSP ENSP00000394472/1-712 HLTETGKNWI EGEEWCLPDM ELWPRELTEL EKEP---AGE NRGPTELLSP bmy_17551T0/1-596 HLTETGKNWI EGEEWCLPDV ELWPREITGL EXEP---AGE NKGPIEPFSP BACU017249/1-720 HLTETGKNWI EGEEWCLPDV ELWPREITGL EKEP---AGE NKGPIEPFSP 601 650 ENSBTAP00000054938/1-673 ---------- ------LVMP SEVSEGEVFS VGGSWTPDLE ISSSQPLEGQ ENSP00000394472/1-712 ---------- ------LVMP SEVSE--VLS VGGRWTPDLE ITSSQPLDGQ bmy_17551T0/1-596 ---------- ------LVMP SENRE----- ---------- -----PIE-- BACU017249/1-720 FVMPSENREP IEPLSPLVMP SEVSEGEVLS VGGSWTADLE IPSSQPLDGQ 651 700 ENSBTAP00000054938/1-673 RDKLLQMDSL DPPQKSCGDL SPPCSNWVDA GLEVSLSMDE VLYPAPEAGK ENSP00000394472/1-712 EDKLLHVSSL DTPQRSYGDL SPPCSNWVET GLEVSLTTDE LLYPSPKAGK bmy_17551T0/1-596 ---------- ---------- ---------- ---------- ---------- BACU017249/1-720 RDKLLHLNSL NPPQRSYGDL SPPCSSWVET GLEVSLTTDE VLYPAPEASK 701 750 ENSBTAP00000054938/1-673 EGSGNSEWVG PLPASPE-EE ID-VDSLSEG -ILPMGILSV WPDPSSESET ENSP00000394472/1-712 EVSGHSELLG SLPASSEEEE IDVVDWTAEG RLVPTTVPSV WPDPSSESET bmy_17551T0/1-596 ---------- --PRSPL--- ---------- -VMPSE---- ---------- BACU017249/1-720 EGFGNFELLD PLPASPEEEE IDVVDSMSEG -IVPMSIPSV WPDPSSESET 751 800 ENSBTAP00000054938/1-673 EVDILT ENSP00000394472/1-712 EVDILT bmy_17551T0/1-596 ------ BACU017249/1-720 EVDILT