KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:16 2014 Check: 00 .. Name: ENSTTRP00000001960/1-441 Len: 496 Check: 99 Weight: 1.00 Name: ENSP00000347213/1-495 Len: 496 Check: 9745 Weight: 1.00 Name: ENSBTAP00000054974/1-495 Len: 496 Check: 211 Weight: 1.00 Name: bmy_14835T0/1-454 Len: 496 Check: 5050 Weight: 1.00 Name: BACU009834/1-485 Len: 496 Check: 4197 Weight: 1.00 // 1 50 ENSTTRP00000001960/1-441 ---------- ---------- ---------- ---AAASLTY GIVLDAGSSH ENSP00000347213/1-495 MAGKVRSLLP PLLLAAAGLA GLLLLCVPTR DVREPPALKY GIVLDAGSSH ENSBTAP00000054974/1-495 MAGKALSLLP PLLLAAAGLA GLLLLCVPTR DIREPPALKY GIVLDAGSSH bmy_14835T0/1-454 ---------- ---------- ---------- --MEGELVLK GQIGPPAPKP BACU009834/1-485 ---MCSASGA PPLLRFPEAR GLGLP----- --RQGPLLPY GIVLDAGSSH 51 100 ENSTTRP00000001960/1-441 TSMFIYKWPA DKENDTGIVG QHSSCDVR-G GGISSYADNP SGAGQSLVEC ENSP00000347213/1-495 TSMFIYKWPA DKENDTGIVG QHSSCDVP-G GGISSYADNP SGASQSLVGC ENSBTAP00000054974/1-495 TSMFIYKWPA DKENDTGIVG QHSSCDAQ-G GGISSYADNP SGAGQSLVEC bmy_14835T0/1-454 TCGVV----- -----TGPVP AEEASSQPSG GGISSYADNP SGAGQSLVEC BACU009834/1-485 TSMFIYKWPA DKENDTGIVG QHSSCDVR-G GGISSYADSP SGAGQSLVEC 101 150 ENSTTRP00000001960/1-441 LNQALRDVPK ERHAGTPLYL GATAGMRLLN LTNPEAAANV LASATQTLTQ ENSP00000347213/1-495 LEQALQDVPK ERHAGTPLYL GATAGMRLLN LTNPEASTSV LMAVTHTLTQ ENSBTAP00000054974/1-495 LNQALRDVPK ERHAGTPLYL GATAGMRLLN LTSPEASANV LAAVTQTLTQ bmy_14835T0/1-454 LNQALRDVPK ERHAGTPLYL GATAGMRLLN LTSPEASANV LAAATQTLTQ BACU009834/1-485 LNQALRDVPK ERHAGTPLYL GATAGMRLLN LTSPEASANV LAAATQTLTQ 151 200 ENSTTRP00000001960/1-441 YPFDFRDARI LSAQDEGVFG WVAANCLLEN FIKXXXXXXX XXXXXXXXXX ENSP00000347213/1-495 YPFDFRGARI LSGQEEGVFG WVTANYLLEN FIKYGWVGRW FRPRKGTLGA ENSBTAP00000054974/1-495 YPFDFRGARI LSGQDEGVFG WVTANYLLEN FIKYGWVGRW FRPRKGTLGA bmy_14835T0/1-454 YPFDFRGARI LSAQDEGVFG WVTANYLLEN FIKYGWVGQW FRPKKGTLGA BACU009834/1-485 YPFDFRGARI LSAQDEGVFG WVTANYLLEN FIKHGWVGQW FRPKKGTLGA 201 250 ENSTTRP00000001960/1-441 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000347213/1-495 MDLGGASTQI TFETTSPAED RASEVQLHLY GQHYRVYTHS FLCYGRDQVL ENSBTAP00000054974/1-495 MDLGGASTQI TFETTSPTED PANEVQLRLY GQRYRVYTHS FLCYGRDQVL bmy_14835T0/1-454 MDLGGASTQI TFETASPAED PASEVQLRLY GQHYRVYTHS FLCYGRDQVL BACU009834/1-485 MDLGGASTQI TFETASPAED PASEVQLRLY GQHYRVYTHS FLCYGRDQVL 251 300 ENSTTRP00000001960/1-441 XXXXXXXXXT HGFHPCWPKG YSTHVLLQDV YESPCTAAQR PQTFNRSAKV ENSP00000347213/1-495 QRLLASALQT HGFHPCWPRG FSTQVLLGDV YQSPCTMAQR PQNFNSSARV ENSBTAP00000054974/1-495 RRLLARALQT HGSHPCWPRG YSTHVMLWDV YESPCTAAQR PQAFNRSTRV bmy_14835T0/1-454 RRLLASALQT HSFHPCWPKG YSTHVLLQDV YESPCTAAQR PQTYNRSTKV BACU009834/1-485 RRLLASALQT HGFHPCWPKG YSTHVLLQDV YESPCTAAQR PQTFNRSTKV 301 350 ENSTTRP00000001960/1-441 SLSGSSDPAL CRGLMSELFN FSSCRFSGRS FNGIFQPPLP GKFIAFSAFF ENSP00000347213/1-495 SLSGSSDPHL CRDLVSGLFS FSSCPFSRCS FNGVFQPPVA GNFVAFSAFF ENSBTAP00000054974/1-495 SLAGSSDPAL CRSLVSQLFN SSSCHFSRCS FNGVFQPPVA GKFIAFSAFF bmy_14835T0/1-454 SLSGSSDPAL CRGLISELFN FSSCRFSRCS FNGIFQPPLA GKFIAFSAFF BACU009834/1-485 SLSGSSDPAL CRGLISELFN FSSCRFSRCS FNGIFQPPLA GKFIAFSAFF 351 400 ENSTTRP00000001960/1-441 HTVDFLRTGM GLPVATLQQL EAAVVTICNQ TWSELQAQAP GERARLPDYC ENSP00000347213/1-495 YTVDFLRTSM GLPVATLQQL EAAAVNVCNQ TWAQLQARVP GQRARLADYC ENSBTAP00000054974/1-495 YTMDFLRTVM GLPVATLQQL EGAVVTLCNQ TWSELQARAP DDRARLPDYC bmy_14835T0/1-454 YTVDFLRTVM GLPVATLQQL EAAVVTICNQ TWSELQARAP GEGARLPDYC BACU009834/1-485 YTVDFLRTVM GLPVATLQQL EAAVVTICNQ TWSELQARAP GERARLPDYC 401 450 ENSTTRP00000001960/1-441 AGATFVQPLL CRGYGFDERT FGGVTFQKKA GDTAVGWALG YVPNLTNLIP ENSP00000347213/1-495 AGAMFVQQLL SRGYGFDERA FGGVIFQKKA ADTAVGWALG YMLNLTNLIP ENSBTAP00000054974/1-495 AGAMFVQQLL SRGYGFDERS FGGVTFQKKA GDTAVGWALG YMLNLTNLIP bmy_14835T0/1-454 AGATFVQQLL RRGYGFDERA FGGVTFQKKA GGTAVGWALG YMLNLTNLIP BACU009834/1-485 AGATFVQQLL RRGYGFDERA FGGVTFQKKA GDTAVGWALG YMLNLTNLIP 451 500 ENSTTRP00000001960/1-441 ADPPGLRKGT DFSSRVVLLL LAAMT----- ---------- ------ ENSP00000347213/1-495 ADPPGLRKGT DFSSWVVLLL LFASALLAAL VLLLRQVHSA KLPSTI ENSBTAP00000054974/1-495 ADPPGLRKGT DFSSWVVLLL LFAAMLLAAF ALLLHQARST KSASTI bmy_14835T0/1-454 ADPPGLRKGT DFGSWVVLLL LFAAMPLAAF VLLLHRARSA KSPSAI BACU009834/1-485 ADPPGLRKGT DFSSWVVLLL LFAAMPLAAS VLLLHRARSA KSPSAI