KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:21 2014 Check: 00 .. Name: ENSP00000269703/1-531 Len: 574 Check: 1505 Weight: 1.00 Name: ENSBTAP00000055004/1-531 Len: 574 Check: 1278 Weight: 1.00 Name: ENSTTRP00000008139/1-531 Len: 574 Check: 485 Weight: 1.00 Name: BACU004855/1-542 Len: 574 Check: 5984 Weight: 1.00 Name: bmy_19202T0/1-510 Len: 574 Check: 4269 Weight: 1.00 // 1 50 ENSP00000269703/1-531 -----MLPIT DRLLHLLGLE KTAFRIYAVS TLLLFLLFFL FRLLLRFLRL ENSBTAP00000055004/1-531 -----MLPIT EQLLHLLGLE KTAFRLYAVS GLLLTLLFFL FRLLLQFLRL ENSTTRP00000008139/1-531 -----MLPIT EHLLHLLGLE KTAFRLYALS GLLLSLLFFL FRLLLQFLRL BACU004855/1-542 MCPPRMLPIT ENLLHLLGLE KTAFRLYALS GLLLSLLFFL FRLLLQFLRL bmy_19202T0/1-510 -----MLPIT EHLLHLLGLE KTAFRLYALS GLLLSLLFFL FRLLLQFLRL 51 100 ENSP00000269703/1-531 CRSFYITCRR LRCFPQPPRR NWLLGHLGM- -----YLPNE AGLQDEKKVL ENSBTAP00000055004/1-531 CWGFYITCRR LRCFPQPPRR NWLLGHLGM- -----YLPNE RGLQDEKKVL ENSTTRP00000008139/1-531 CWHFYITCCR LRCFPQPPRR SWLLGHLGM- -----YLPNE TGLQDEKKVL BACU004855/1-542 CWHFYITCCR LRCFPQPPRR SWLLGHLGMV CVAGQYLPNE TGLQDEKKVL bmy_19202T0/1-510 CWHFYITCCR LRCFPQPPRR SWLLGHLGM- -----YLPNE TGLQDEKKVL 101 150 ENSP00000269703/1-531 DNMHHVLLVW MGPVLPLLVL VHPDYIKPLL GASAAIAPKD DLFYGFLKPW ENSBTAP00000055004/1-531 DDMHHVILVW LGPVLPLVVL VHPDYIKPLV GASAAVAPKD DLFYGFLKPW ENSTTRP00000008139/1-531 DSMHHVILVW IGPVLPLVVL VHPDYIKPLV GASAAVAPKD DLFYGFLKPW BACU004855/1-542 DSMHHVILVW IGPVLPLLVL VHPDYIKPLV GASAAVAPKD DLFYGFLKPW bmy_19202T0/1-510 DSMHHVILVW IGPVLPLLVL VHPDYIKPLV GAS------- ---------- 151 200 ENSP00000269703/1-531 LGDGLLLSKG DKWSRHRRLL TPAFHFDILK PYMKIFNQSA DIMH------ ENSBTAP00000055004/1-531 LGDGLLLSRG DKWSRHRRLL TPAFHFDILK PYMKIFNQCA DTMH------ ENSTTRP00000008139/1-531 LGDGLLLSKG DKWSRHRRLL TPAFHFDILK PYMKIFNQCA DIMH------ BACU004855/1-542 LGDGLLLSKG DKWSQHRRLL TPAFHFDILK PYMKIFNQCT SIMH------ bmy_19202T0/1-510 -GDGLLLSKG DKWSRHRRLL TPAFHFDILK PYMKIFNQCT GIMHWSCSEL 201 250 ENSP00000269703/1-531 ---------- ---------- -----AKWRH LAEGSAVSLD MFEHISLMTL ENSBTAP00000055004/1-531 ---------- ---------- -----AKWRG LAEGSEVSLD MFEHVSLMTL ENSTTRP00000008139/1-531 ---------- ---------- -----AKWQR LAEGSEVSLD MFEHVSLMTL BACU004855/1-542 ---------- ---------- -----AKWRR LAEGSEVSLD MFEHVSLMTL bmy_19202T0/1-510 AAGSLSARLK VCGLHTHLPR VFLFQAKWRC LAEGSEVSLD MFEHVSLMTL 251 300 ENSP00000269703/1-531 DSLQKCVFSY NSNCQEKMSD YISAIIELSA LSVRRQYRLH HYLDFIYYRS ENSBTAP00000055004/1-531 DCLQKCVFSY NSNCQEKMSD YISAIIELSA LVVRRQYRLH HYLDFIYYRT ENSTTRP00000008139/1-531 DTLQKCVFSY SSNCQEKMTD YISAIIELSA LVVRRQYRLH HHIDFIYYRT BACU004855/1-542 DSLQKCVFSY DSNCREKMSD YISAIIELSA LVVRRQYRLH HHIDFIYYRT bmy_19202T0/1-510 DSLQKC---- -------MSD YISAIIELSA LVVRRQYRLH HHIDFIYYHT 301 350 ENSP00000269703/1-531 ADGRRFRQAC DMVHHFTTEV IQERRRALRQ QGAEAWLKAK QGKTLDFIDV ENSBTAP00000055004/1-531 ADGRRFRQAC DTVHGFTTEV IQERRRALRQ QGAEAWFKAK QGKTLDFIDV ENSTTRP00000008139/1-531 ADGRRFRQAC DTVHHFTTEV IQERRRALHQ LGAEAWLKAK QGKTLDFIDV BACU004855/1-542 ADGRRFQQAC DTVHHFTTEV IQERRWALHQ LGAEAWLKAK QGKTLDFIDV bmy_19202T0/1-510 ADGRRFRQAC DTVHHFTTEV IQERRRALHQ LGAEAWLKAK QGKTLDFIDV 351 400 ENSP00000269703/1-531 LLLARDEDGK ELSDEDIRAE ADTFMFEGHD TTSSGISWML FNLAKYPEYQ ENSBTAP00000055004/1-531 LLLAKDEDGK ELSDEDIRAE ADTFMFEGHD TTSSGLSWVL FNLAKYPEYQ ENSTTRP00000008139/1-531 LLLARDEDGK ELSDEDIRAE ADTFMFEGHD TTSSGLSWVL FNLAKYPEYQ BACU004855/1-542 LLLARDEDGK ELSDEDIRAE ADTFMFEGHD TTSSGLSWVL FNLAKYPEYQ bmy_19202T0/1-510 LLLARDEDGK ELSDEDIRAE ADTFMFEGHD TTSSGLSWVL FNLAKYPE-- 401 450 ENSP00000269703/1-531 EKCREEIQEV MKGRELEELE WDDLTQLPFT TMCIKESLRQ YPPVTLVSRQ ENSBTAP00000055004/1-531 EKCREEIQEV MKGRELEELE WDDLTQLPFT TMCIKESLRQ FPPVTLVSRR ENSTTRP00000008139/1-531 EKCREEIQEV MKGRELEELE WDDLTQLSFT T-CIKESLRQ FPPVTLISRR BACU004855/1-542 EKCREEIQEV MKGRELEELE WDDLTQLPFT TLCIKESLRQ FPPVTLISRR bmy_19202T0/1-510 ---------- ---------- -DDLTQLPFT TLCIKESLRQ FPPVTLISRR 451 500 ENSP00000269703/1-531 CTEDIKLPDG RIIPKGIICL VSIYGTHHNP TVWPDSKVYN PYRFDPDNPQ ENSBTAP00000055004/1-531 CTEDIKLPDG RIIPKGIICL VSIYGTHYNP AVWPDSKVYN PYRFDPDNPQ ENSTTRP00000008139/1-531 CTEDIKLPDG RIIPKGIICL VSIYGTHHNP TVWPDSKVYN PYRFDPDNPQ BACU004855/1-542 CTEDIKLPDG RIIPKGIICL VSIYGTHHNP TVWPDSKVYN PYRFDPDNPQ bmy_19202T0/1-510 CTEDIKLPDG RIIPKGIICL VSVYGTHHNP TVWPESKVYN PYRFDPDNPQ 501 550 ENSP00000269703/1-531 QRSPLAYVPF SAGPRNCIGQ SFAMAELRVV VALTLLRFRL SVDRTRKVRR ENSBTAP00000055004/1-531 QRSPLAYVPF SAGPRNCIGQ SFAMAEMRVA VALTLLRFRL SVDRTRKVRR ENSTTRP00000008139/1-531 QRSPLAYMPF SAGPRNCIGQ SFAMAEMRVA VALTLLRFRL SVDRTRKVRR BACU004855/1-542 QRSPLAYMPF SAGPRNCIGR SFAMAEMRVA VALTLLRFRL SVDRTRKVRR bmy_19202T0/1-510 QRSPLAYMPF SAGPRNCIGQ SFAMAEMRVA VALTLLRFRL SVDRTRKVRR 551 600 ENSP00000269703/1-531 KPELILRTEN GLWLKVEPLP PRA- ENSBTAP00000055004/1-531 KPELILRTEN GIWLKVEPLP PRA- ENSTTRP00000008139/1-531 KPELILRTED GIWLKVEPLP PRAC BACU004855/1-542 KPELILRAEN GIWLKVEPLP PRA- bmy_19202T0/1-510 KPELILRAEN GIWLKVEPLP PRA-