KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:25:22 2014 Check: 00 .. Name: ENSBTAP00000055010/1-694 Len: 697 Check: 9304 Weight: 1.00 Name: BACU008488/1-428 Len: 697 Check: 8195 Weight: 1.00 Name: bmy_16642T0/1-600 Len: 697 Check: 2204 Weight: 1.00 Name: ENSTTRP00000008620/1-630 Len: 697 Check: 3158 Weight: 1.00 // 1 50 ENSBTAP00000055010/1-694 MGREPRYPGL DIGTDSERAL CSHQSRHPDS FRMEVKGQLI SSPTFNASAA BACU008488/1-428 ---------- ---------- ---------- --MEVKGQLI SSPTFSASAA bmy_16642T0/1-600 ---------- ---------- ---------- --MEVKGQLI SSPTFSASAA ENSTTRP00000008620/1-630 ---------- ---------- ---------- --MEVKGQLI SSPTFSASAA 51 100 ENSBTAP00000055010/1-694 LFGEAAPQMK SERLRSLLDR QRALQEALSL KLQELRKVCL QEAELTGQLP BACU008488/1-428 LFGEAAPQVK SERLRGLLDR QRTLQEALSL KLQELRKVCL QEAELTGQLP bmy_16642T0/1-600 LFGEAAPQVK SERLRGLLDR QRTLQEALSL KLQELRKVCL QEAELTGQLP ENSTTRP00000008620/1-630 LFGEAAPQVK SERLRGLLDR QRTLQEALSL KLQELRKVCL QEAELTGQLP 101 150 ENSBTAP00000055010/1-694 PECPLEPGER PQLVRRRPPA ARAYPPPHPN PAHHSLCPTE ---ELALEAL BACU008488/1-428 PECPLEPGER PQLVRRRPPA ARAYPPX--- ---------- ---------- bmy_16642T0/1-600 PECPLEPGER PQLVRRRPPA ARAYPPPHPN PAHHSLCPAK APQELALEAL ENSTTRP00000008620/1-630 PECPLEPGER PQLVRRRPPA ARAYPPPHPN PAHHSLCPAK ---ELALEAL 151 200 ENSBTAP00000055010/1-694 EREVSVQQQI AAAARRLALA PELSAEQRRR RRQVQADALR RLHELEEQLG BACU008488/1-428 ---------- ---------- ---------- ---------- ---------- bmy_16642T0/1-600 EREVSVQQQI AAAARRLALA PELSAEQRRR RRQVQADALR RLHELEEQLG ENSTTRP00000008620/1-630 EREVSVQQQI AAAARRLALA PELSAEQRRR RRQVQADALR RLHELEEQLG 201 250 ENSBTAP00000055010/1-694 EVRARLGLSG LPPSQPLPLS TGGAVITTQG VCLGTRLAQL SHEDVVLHSE BACU008488/1-428 ---------- ---------- ---------- ---------- ---------- bmy_16642T0/1-600 DVRAHLGLPG IPPPQPLPLS A-GTVITAQG VCLGTRLAQL SQEDVVLHSE ENSTTRP00000008620/1-630 DVRAHLGLPG IPPPQPLPLS T-GAVIVAQG VCLGTRLAQL SQEDVVLHSE 251 300 ENSBTAP00000055010/1-694 SSSLSESGAS HDNEEPRGCF PLAERPSPPK AWDQLRAVSG GSPERRTPWK BACU008488/1-428 ---------- ----EPRGCF PLAERPSPPN AWDQLRAVSG GSPERRTPWK bmy_16642T0/1-600 SSSLSESGAS HDNEEPRGCF PLAERPSPPK AWDQLQAVSG GSPERRTPWK ENSTTRP00000008620/1-630 SSSLSESGAS HDNEEPRGCF PLAERPSPPK AWDQLRAVSG GSPERRTPWK 301 350 ENSBTAP00000055010/1-694 PPPSDLYGDL KGRRNSVASP TSPTRSLPRS ASSFEGRSVP ATPVLTRGAG BACU008488/1-428 PPPSDLYGDL KSRRNSVASP TSPTRSLPRS ASRFEGRSVP ATPVLTRGAG bmy_16642T0/1-600 PPPSDLYGDL KSRRNSVASP T--------- ---------- ---------- ENSTTRP00000008620/1-630 PPPSDLYGDL KSRRNSVASP TSPTRSLPRS ASSFEGRSVP ATPVLTRGAG 351 400 ENSBTAP00000055010/1-694 PQLCKPEGLH SRQWSSSQDS QMGFPRVDPV SDRTSLFAAR TRRSNSSEAL BACU008488/1-428 PQLCKPEGLH SRQWSGSQDS QMGFPRADPV SDRASLFAAR TRRSNSSEAL bmy_16642T0/1-600 ----RPEGLH SRQWSGSQDS QMGFPRADPV SDRASLFAAR TRRSNSSEAL ENSTTRP00000008620/1-630 PQLCKPEGLH SRQWSGSQDS QMGFPRADPV SDRASLFAAR TRRSNSSEAL 401 450 ENSBTAP00000055010/1-694 LVDRAAGGGA GSPPAPMVPP ASGPPVCKSS EVLYERPQPT PAFSSRTAGL BACU008488/1-428 LVDRAASGGA GSPPAPLVPP AAGPPVCKST ---------- ---------- bmy_16642T0/1-600 LVDRAASGGA GSPPAPLVPP AAGPPVCKSS EVLYERPQPT PAFSSRTAGP ENSTTRP00000008620/1-630 LVDRAASGGA GSPPAPLVPP ATGPPACKSS EVLYERPQPT PAFSSRTAGP 451 500 ENSBTAP00000055010/1-694 PDPPRAARPS SAAPASRGAP RLPPVCGDFL LDYSLDRGLP RGGGGTGWGE BACU008488/1-428 ---------- ---------- ---------- ---------- ---------- bmy_16642T0/1-600 PDPPRAARPS SAAPASRGVP RLPPVCGDFL LDYSLDRGLP RSGGGTGWGE ENSTTRP00000008620/1-630 PDPPRAARPS SAAPASRGVP RLPPVCGDFL LDYSLDRGLP RGGGGTGWGE 501 550 ENSBTAP00000055010/1-694 LLPAAEVPGP LSRRDGLVAM LPGPPPVYAA DGSSPLLRSK DPHSRAPRTK BACU008488/1-428 ---------- ---------- ---------- DGSSPLLRSQ DPHSRATRTK bmy_16642T0/1-600 LLPAAEVPGP LSRRDGLLSM LPGPPPVYAA DGSSPLLRSK DPHSRATRTK ENSTTRP00000008620/1-630 LLPTAEVPGP LSRRDGLLTM LPGPPPVYAA DGSSPLLRSK DPHSRATRTK 551 600 ENSBTAP00000055010/1-694 PCGLPLEAAE GLEAHPNPVL WMPPPARIPT AGERSGHKNL ALEGLRDWYI BACU008488/1-428 PCGLPLEAAE GPEVHPNPLL WMPPPARIPP AGERSGHKNL ALEGLRDWYI bmy_16642T0/1-600 PCGLPLEAAE GPEVHPNPLL WMPPPARIPP AGERSGHKNL ALEGLRDWYI ENSTTRP00000008620/1-630 PCGLPLEAAE GPEVHPNPLL WMPPPARIPP AGERSGHKSL ALEGLRDWYI 601 650 ENSBTAP00000055010/1-694 RNSGLASGPQ RRPGLPHMGP QHPPFLHARC YEVGQALYGA PSQAPLPHSR BACU008488/1-428 RNSGLATGPQ RRPGLPHMGP QHPPFLHARC YEVGQALYGA PSQAPLPHSR bmy_16642T0/1-600 RNSGLATGPQ RRPGLPHMGP QHPPFLHARC YEVGQALYGA PSQAPLPHSR ENSTTRP00000008620/1-630 RNSGLATGPQ RRPGLPHMGP QHPPFLHARC YEVGQALYGA PSQAPLPHSR 651 700 ENSBTAP00000055010/1-694 SFTAPPVSGR YYADFLYPPE LSARLSDLTL EGEQSSGSDP QTPGTLV BACU008488/1-428 SFTAPPVSGR YYADFLYPPE LSARLSDLTL EGEQSSGSDP QTPGTLV bmy_16642T0/1-600 SFTAPPVSGR YGGCFY---- ---------- ---------- ------- ENSTTRP00000008620/1-630 SFTAPPVSGR YGGCFY---- ---------- ---------- -------