KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:25:22 2014 Check: 00 .. Name: ENSP00000370697/1-359 Len: 360 Check: 7472 Weight: 1.00 Name: ENSBTAP00000055014/1-354 Len: 360 Check: 9122 Weight: 1.00 Name: bmy_17976T0/1-353 Len: 360 Check: 4856 Weight: 1.00 Name: ENSTTRP00000014596/1-353 Len: 360 Check: 182 Weight: 1.00 // 1 50 ENSP00000370697/1-359 MQVPNSTGPD NATLQMLRNP AIAVALPVVY SLVAAVSIPG NLFSLWVLCR ENSBTAP00000055014/1-354 MDV-NMTRPD NATILMLRDP AIAVVLPVVY SLVALVSIPG NLFSLWVLCR bmy_17976T0/1-353 MDM-NLTRPD NATLLMLRDP AIAVVLPVVY SLVALISIPG NLFSLWVLCR ENSTTRP00000014596/1-353 MDM-NVTRPD NATLLMLRDP AIAVVLPVVY SLVALISIPG NLFSLWVLCR 51 100 ENSP00000370697/1-359 RMGPRSPSVI FMINLSVTDL MLASVLPFQI YYHCNRHHWV FGVLLCNVVT ENSBTAP00000055014/1-354 HIGPKTPSVI FMINLSVTDL MLACVLPFQI YYHCNGNHWV FGVLLCNAVT bmy_17976T0/1-353 HIGPKTPSVI FMINLSVTDL MLACVLPFQI YYHCNGNHWV FGELLCNVVT ENSTTRP00000014596/1-353 HIGPKTPSVI FMINLSVTDL MLACVLPFQI YYHCNGNHWV FGELLCNVVT 101 150 ENSP00000370697/1-359 VAFYANMYSS ILTMTCISVE RFLGVLYPLS SKRWRRRRYA VAACAGTWLL ENSBTAP00000055014/1-354 VAFYANMYSS ILTMTCISVD RFLGVVYPLA SARWRRRRYA LAACAGTWLL bmy_17976T0/1-353 VAFYANMYSS ILTMTCISVD RFLGVVYPLA SARWRCRRYA AAACAGTWLL ENSTTRP00000014596/1-353 VAFYANMYSS ILTMTCISVD RFLGVVYPLA SARWRCRRYA VAACAGTWLL 151 200 ENSP00000370697/1-359 LLTALSPLAR TDLTYPVHAL GIITCFDVLK WTMLPSVAMW AVFLFTIFIL ENSBTAP00000055014/1-354 LLAALSPLAR TDLTYAVDAL GIVTCFDVLK SNMLPSVAMW AAFLFTLFVV bmy_17976T0/1-353 LLAALSPLAR TDLTYAVEAL GIVTCFDVLK STMLPSVATW AAFLFTLFVV ENSTTRP00000014596/1-353 LLAALSPLAR TDLTYAVEVL GIVTCFDVLK SSMLPSVAMW AVFLLTLFVV 201 250 ENSP00000370697/1-359 LFLIPFVITV ACYTATILKL LRTEEAHGRE QRRRAVGLAA VVLLAFVTCF ENSBTAP00000055014/1-354 LFLIPFVVTV ACYTATILTL LRSADRHGRA QRRRAVSLAA VVLLAFVACF bmy_17976T0/1-353 LFLIPFVVTV ACYTATILAL LRSADRHGEA RRRRAVCLAA VVLLAFVTCF ENSTTRP00000014596/1-353 LFLVPFVVTV ACYTATILTL LRSADRHGEA RRSRAVCLAA VVLLAFVTCF 251 300 ENSP00000370697/1-359 APNNFVLLAH IVSRLFYGKS YYHVYKLTLC LSCLNNCLDP FVYYFASREF ENSBTAP00000055014/1-354 APNNFVLLVH MVSRLFLGRS YYHIYKLTLC LSCLNNCLDP FVYYFASSEF bmy_17976T0/1-353 APNNFVLLAH VVSRLFFGRS YYHVYKLTLC LSCLNNCLDP FVYYFASHEF ENSTTRP00000014596/1-353 APNNFVLLVH VVSRLFFGRS YYHVYKLTLC LSCLNNCLDP FVYYFASREF 301 350 ENSP00000370697/1-359 QLRLREYLGC RRVP-RDTLD TRRESLFSAR TTSVRSEAGA HPEGMEGATR ENSBTAP00000055014/1-354 QLRLRDYLGY GPLPAADSPD SRHESLFSGR TLSARS---- -VDGQEAPER bmy_17976T0/1-353 QLHMRRYLGY RPLA-TGSPE ARCESLGSGR TLSVRS---- -AEGLDAAGR ENSTTRP00000014596/1-353 QLHMRHYLGY RLLP-TGSPE GHLESLASGR TLSVRS---- -VEGLDAAGR 351 400 ENSP00000370697/1-359 PGLQRQESVF ENSBTAP00000055014/1-354 PSVKRQESVF bmy_17976T0/1-353 PSVKRQESVF ENSTTRP00000014596/1-353 PSVKRQESVF