KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:25 2014 Check: 00 .. Name: ENSBTAP00000055055/1-484 Len: 667 Check: 6114 Weight: 1.00 Name: ENSP00000342848/1-483 Len: 667 Check: 7285 Weight: 1.00 Name: ENSTTRP00000003638/1-465 Len: 667 Check: 523 Weight: 1.00 Name: bmy_13888T0/1-572 Len: 667 Check: 4961 Weight: 1.00 Name: BACU009815/1-388 Len: 667 Check: 390 Weight: 1.00 // 1 50 ENSBTAP00000055055/1-484 ---------- ---------- ---------- ---------- --MASLRDLL ENSP00000342848/1-483 ---------- ---------- ---------- ---------- --MASLGDLV ENSTTRP00000003638/1-465 ---------- ---------- ---------- ---------- --MPSLGDLV bmy_13888T0/1-572 VLGPQPPHRT RDGTPNAAGR ARRPPARNLR LPPWGRAGVH LVMPSLGDLV BACU009815/1-388 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000055055/1-484 RDWHQGAQAV ARGDWDCALR LFSSISEPPA RVSFNVGCVH L-AGDPEAAL ENSP00000342848/1-483 RAWHLGAQAV DRGDWARALH LFSGVPAPPA RLCFNAGCVH LLAGDPEAAL ENSTTRP00000003638/1-465 RDWHRGAQAV ARGDWDYALR LFSSVPEPPA RMSFNVGCVH LLAGDPEAAL bmy_13888T0/1-572 RDWHRGAQAV ARGDWDCALR LFSSVPEPPA RMSFNVGCVH LLAGDPEAAL BACU009815/1-388 ---------- ---------- ---------- -MSFNVGCVH LLAGDPEAAL 101 150 ENSBTAP00000055055/1-484 RAFDQAVTKD ACLAVGFLQR GVANFQLERF MEALSDFQRT LAQLRDNTAI ENSP00000342848/1-483 RAFDQAVTKD TCMAVGFFQR GVANFQLARF QEALSDFWLA LEQLRGHAAI ENSTTRP00000003638/1-465 RAFDQAVTKD ACMAVGFFQR GVANFQLGXX XXXXXXXXXX XXXXXXXXXX bmy_13888T0/1-572 RAFDQAVTKD ACMAVGFFQR GVANFQLERF LQP------- --QAWPSTQV BACU009815/1-388 RAFDQAVTKD ACMAVGFFQR GVANFQLERF REALSDLQRA LAQLRDNAAI 151 200 ENSBTAP00000055055/1-484 DYTQLGLRFK LQAWEVLFNM AAVQSQLGLW AEAACSLGDA ISKGPEGARN ENSP00000342848/1-483 DYTQLGLRFK LQAWEVLHNV ASAQCQLGLW TEAASSLREA MSKWPEGSLN ENSTTRP00000003638/1-465 XXXXXXXXXX XXXXXXXXXX XXVQSQLGLW AEATHSLEEA ISKGPEGARD bmy_13888T0/1-572 CIVRIPLQ-- ---------- ---------- ---------- ---------- BACU009815/1-388 DYTQLGLRFK LQAWE----- ---------- ---------- ---------- 201 250 ENSBTAP00000055055/1-484 GLDVALGQVQ KQVPLQPRQV PRGEVFRPHR RHVEHLEPVD FLGKAKVLAS ENSP00000342848/1-483 GLDSALDQVQ RRGSLPPRQV PRGEVFRPHR WHLKHLEPVD FLGKAKVVAS ENSTTRP00000003638/1-465 DLDIALGQVQ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVVAS bmy_13888T0/1-572 ---------- KQVPLQPRQV PRGEVFRPHR RHLAHLEPVD FLGKAKVVAS BACU009815/1-388 ---------- KQVPLQPRQV PRGEVFRPHR RHLAHLEPVD FLGKAKVVAS 251 300 ENSBTAP00000055055/1-484 ALPTDSHGVA -PPQPQ--GS GSRSRL---T HDRAELVASC PAGPSCR--- ENSP00000342848/1-483 AIPDDQGWGV RPQQPQ--GP GANHDA---- --RSLIMDSP RAGTHQG--- ENSTTRP00000003638/1-465 AIPDGPHEDA RPQQPQ--GL YARGEA---- --RARDTGPS RPGTRCG--- bmy_13888T0/1-572 AIPDGPHEDA RPQQPQVGGQ PSSHLISPLT FCRARDTGPS GPGTRCGPRT BACU009815/1-388 AVPDGPHGDA RPQQPQ--AL YARGEARPGA AERARDTGPS GPGTRRGPRT 301 350 ENSBTAP00000055055/1-484 PCPSPSRVCW AQQSPRPRPL ---------- ---------- ---------- ENSP00000342848/1-483 PLDAETEVG- -----ADRCT STAYQE---- ---------- ---------- ENSTTRP00000003638/1-465 PLDAETEVS- -----ADHGT LVTNDE---- ---------- ---------- bmy_13888T0/1-572 PLDAEMEVSS GQAGRADHGT LVTNDEQVGE PGQGRQGPQY LEDPRPRLSF BACU009815/1-388 PLDAEMGVSS GQAGRADRGT LVTNAE---- ---------- ---------- 351 400 ENSBTAP00000055055/1-484 ---------- ---------- ---------- ---------- ---------- ENSP00000342848/1-483 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003638/1-465 ---------- ---------- ---------- ---------- ---------- bmy_13888T0/1-572 GTSHSWALQG SQGRAGHAPH HWLCSDSVWA PPLTSSRPRE SYVHPQGPTP BACU009815/1-388 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000055055/1-484 ---------- -PRPEAQQRG QQSPDSLAAP SFLPAGLLAA GGPSPGSSSE ENSP00000342848/1-483 ---------- -QRPQVEQVG KQAP------ --LSPGLPAM GGPGPGPCED ENSTTRP00000003638/1-465 ---------- -QKPHVEQVG QWVP------ ----PGLLVA GGLGPGSSED bmy_13888T0/1-572 ARQSPSLWLS LQRPHVEQVG QQVP------ ----PGLLVA GGLGPGSSED BACU009815/1-388 ---------- -QRPHVEQVG QQVP------ ----PGLLVA GGPGPGSSED 451 500 ENSBTAP00000055055/1-484 AASTG----- ---------- ---------- -------GAA PGRSESLATV ENSP00000342848/1-483 PAGAG----- ---------- ---------- -------GAG AGGSEPLVTV ENSTTRP00000003638/1-465 PAGAG----- ---------- ---------- -------GVA AGGPESLVTF bmy_13888T0/1-572 PAGAGSLPCP LARSPPWQSW AHRSGALETN HLSAWTQGVA AGGPESLVTV BACU009815/1-388 PAGAG----- ---------- ---------- -------GVA AGGPESLVTF 501 550 ENSBTAP00000055055/1-484 TVQCALTLSL TAPRGADLSS LRALMSQALP PHAQRAQLSY QDPSEDGRWV ENSP00000342848/1-483 TVQCAFTVAL RARRGADLSS LRALLGQALP HQAQLGQLSY LAPGEDGHWV ENSTTRP00000003638/1-465 TVQCTFTLAL RAPRGADLSS LRALMSQALP LQAQSGQLSY RDPSDSRGWV bmy_13888T0/1-572 TVRCTFTLAL RAPRGADLSS LRALMSQALP PQAQSGQLSY RDPSDSGGWV BACU009815/1-388 TVQCTFTLAL RAPRGADLSS LRALMSQALP PQAQSGQLSY RDPSDRGGWV 551 600 ENSBTAP00000055055/1-484 PLSGEEALQR AWR-DAAGPG GLQLQCRGVG GRPVLYQVVA QHVYSAQRPE ENSP00000342848/1-483 PIPEEESLQR AWQDAAACPR GLQLQCRGAG GRPVLYQVVA QHSYSAQGPE ENSTTRP00000003638/1-465 PLTGEEALQR AWRGAAAGSG ELRLRCQGVG GRPVLYQVVA RHGYSAQGPE bmy_13888T0/1-572 PLTGEEALQR AWQ-RAAGPG ELWLQCQGVG GRPVLYQVVA RHGYSAQGPE BACU009815/1-388 PLTGEEALQR AWQ-RAAGPG ELRLQCQGVG GRPVLYQVVA RHGYSAQRPE 601 650 ENSBTAP00000055055/1-484 DLALQPGDTV DVLCE----- --VDQAWLEG HCDGHIGIFP KSFTVPAARR ENSP00000342848/1-483 DLGFRQGDTV DVLCEEPDVP LAVDQAWLEG HCDGRIGIFP KCFVVPAGPR ENSTTRP00000003638/1-465 DLALQPGDTV DVLCEPP--- -AVDQAWLEG HCDGRVGIFP KCFVVPAGRR bmy_13888T0/1-572 DLALQPGDTV DVLCE----- --VDQAWLEG HCDGRIGIFP KCFVVPAIRR BACU009815/1-388 DLALQPGDTV DVLCE----- --VDQAWLEG HCDGRIGIFP KCFVVPAIRR 651 700 ENSBTAP00000055055/1-484 AWGAGGLLRR TPRSWTP ENSP00000342848/1-483 MSGAPGRLPR SQQGDQP ENSTTRP00000003638/1-465 TGAWR----- ------- bmy_13888T0/1-572 T--------- ------- BACU009815/1-388 T--------- -------