KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:26 2014 Check: 00 .. Name: ENSBTAP00000055066/1-796 Len: 1108 Check: 9167 Weight: 1.00 Name: ENSP00000453854/1-1101 Len: 1108 Check: 9490 Weight: 1.00 Name: ENSTTRP00000008926/1-1101 Len: 1108 Check: 4104 Weight: 1.00 Name: bmy_17841T0/1-1049 Len: 1108 Check: 9711 Weight: 1.00 Name: BACU003219/1-1009 Len: 1108 Check: 8253 Weight: 1.00 // 1 50 ENSBTAP00000055066/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000453854/1-1101 MDRAPTEQNV KLSAEVEPFI PQKKSPDTFM IPMALPNDNG SVSGVEPTPI ENSTTRP00000008926/1-1101 MDRAPADQNV KLSAEVEPFI PQKKNPDTFM IPMALPNDNG SVSGVEPTPI bmy_17841T0/1-1049 MDRAPADQNV KLSAEVEPFI PQKKSPDTFM IPMALPNDNG SVSGVEPTPI BACU003219/1-1009 MCFTFSLKNV KLSAEVEPFI PQKKNPDTFM IPMALPNDNG SVSGVEPTPI 51 100 ENSBTAP00000055066/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000453854/1-1101 PSYLITCYPF VQENQSNRQF PLYNNDIRWQ QPNPNPTGPY FAYPIISAQP ENSTTRP00000008926/1-1101 PSYLITCYPF VQENQSNRQF PLYNNDIRWQ QPNPNPAGPY LAYPIISAQP bmy_17841T0/1-1049 PSYLITCYPF VQENQSNRQF PLYNNDIRWQ QPNPNPAGPY LAYPIISAQP BACU003219/1-1009 PSYLITCYPF VQENQSNRQF PLYNNDIRWQ QPNPNPAGPY LAYPIISAQP 101 150 ENSBTAP00000055066/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000453854/1-1101 PVSTEYTYYQ LMPAPCAQVM GFYHPFPTPY SNTFQAANTV NAITTECTER ENSTTRP00000008926/1-1101 PVSTEYTYYQ LMPAPCAQVM GFYHPFPAPY SNTFQAANTV NTITAECTER bmy_17841T0/1-1049 PVSTEYTYYQ LMPAPCAQVM GFYHPFPAPY SNTFQAANTV NTITAECTER BACU003219/1-1009 PVSTEYTYYQ LMPAPCAQVM GFYHPFPAPY SNTFQAANTV NTITAECTER 151 200 ENSBTAP00000055066/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000453854/1-1101 PSQLGQVFPL SSHRSRNSNR GSVVPKQQLL QQHIKSKRPL VKNVATQKET ENSTTRP00000008926/1-1101 PNQLGQVFPL SGHRNRNSNR GPVVPKQQLL QQHIKSKRPL VKNVATQKET bmy_17841T0/1-1049 PNQLGQVFPL SGHRNRNSNR GPVVPKQQLL QQHIKSKRPL VKNVATQKET BACU003219/1-1009 PNQLGQVFPL SGHRNRNSNR GPVVPKQQLL QQHIKSKRPL VKNVATQKET 201 250 ENSBTAP00000055066/1-796 ---------- ---------- ---------- ---------- ---------- ENSP00000453854/1-1101 NAAGPDSRSK IVLLVDASQQ TDFPSDIANK SLSETTATML WKSKGRRRRA ENSTTRP00000008926/1-1101 NAAGPDNRSK IVLLVDASQQ TDFPSDIANK SLSESSATML WKAKGRRRRA bmy_17841T0/1-1049 NAA------- ---------- -DFPSDIANK SLSESSATMV WKAKGRRRRA BACU003219/1-1009 NAAGPDNRSK IVLLVDASQQ TDFPSDIANK SLSESSATMV WKAKGRRRRA 251 300 ENSBTAP00000055066/1-796 ---------- ---------- ---------- ---------- --------HV ENSP00000453854/1-1101 SHPTAESSSE QGASEADIDS DSGYCSPKHS NNQPAAGALR NPDSGTMNHV ENSTTRP00000008926/1-1101 SHPTAESSSE QGASEADIDS DSGYCSPKHS NNQPAAGALR NPDSSTISHV bmy_17841T0/1-1049 SHPTAESSSE QGASEADIDS DSGYCSPKHS NNQPAAGALR NPDSSTISHV BACU003219/1-1009 SHPTAESSSE QGASEADIDS DSGYCSPKHS NNQPAAGALR NPDSSTIS-- 301 350 ENSBTAP00000055066/1-796 DSSICAGGVN WSNVTCQATQ KKPWMEKNQT FSRGGRQTEQ RNNSQVGEIG ENSP00000453854/1-1101 ESSMCAGGVN WSNVTCQATQ KKPWMEKNQT FSRGGRQTEQ RNNSQVGFRC ENSTTRP00000008926/1-1101 ESSICAGGVN WSSVTCQATQ KKPWMEKNQT FSRGGRQAEQ RNNSQVGFRC bmy_17841T0/1-1049 ESSICAGGVN WSNVTCQATQ KKPWMEKNQT FSRGGRQAEQ RNNSQ----- BACU003219/1-1009 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000055066/1-796 HWLSLKSGRR WLLKKKKKRK H---SLKKKE KKKKEILLYY LLRGFLHFFF ENSP00000453854/1-1101 RGHSTSSERR QNLQKRPDNK HLSSSQSHRS DPNSESLYFE DEDGFQELNE ENSTTRP00000008926/1-1101 RGHSTSSERR QNLQKRQDNK QLNPSQCHRG DPNSESLYFE DEDGFRELNE bmy_17841T0/1-1049 ---------- -----RQDNK QLNPSQCHRG DPNSESLYFE DEDGFRELNE BACU003219/1-1009 ---------- ---------- ---------- ---------- DEDGFRELNE 401 450 ENSBTAP00000055066/1-796 FFNAT-PNVD QLISMRIARC FQGFLCIFLI SYPKPVYQHL QSRSTSRLKN ENSP00000453854/1-1101 NGNAKDENIQ QKLSSKVLDD LPENSPINIV QTPIPITTSV PKRAKSQKKK ENSTTRP00000008926/1-1101 NGSAKDENIQ QKLSSKVLDD LPENSPINIV QTPIPITTSV PKRAKSQKKK bmy_17841T0/1-1049 NGSAKDENIQ QKLSPKV--- ---------- -TPIPITTSV PKRAKSQKKK BACU003219/1-1009 NGSAKDENIQ QKLSSKVLDD LPENSPINIV QTPIPITTSV PKRAKSQKKK 451 500 ENSBTAP00000055066/1-796 TKAADIKRSK EGSSLT-PQK KLKSPLHNTA NSQFHFLGSF TLSKMLLPLS ENSP00000453854/1-1101 ALAAALATAQ EYSEISMEQK KLQEALSKAA GKKNKTPVQL DLGDMLAALE ENSTTRP00000008926/1-1101 ALAAALATAQ EYSEISMEQK KLQEALSKAA GKKNKTPVQL DLGDMLAALE bmy_17841T0/1-1049 ALAAALATAQ EYSEISMEQK KLQEALSKAA GKKNKTPVQL DLGDMLAALE BACU003219/1-1009 ALAAALATAQ EYSEISMEQK KLQEALSKAA GKKNKTPVQL DLGDMLAALE 501 550 ENSBTAP00000055066/1-796 SSQQHVTLKP RMYSMFKPFA YTIKSLTTFE HLDTNSTHSL KPIPNTNPIL ENSP00000453854/1-1101 KQQQ--AMKA RQITNTRPLS YTVVTAASFH TKDSTNR--- KPLTKSQPCL ENSTTRP00000008926/1-1101 KQQQ--AMKA RQITNTRPLS YTVVTAASFH TKDSTNR--- KPLTKGQPCL bmy_17841T0/1-1049 KQQQ--AMKA RQITNTRPLS YTVVTAASFH TKDSTNR--- KPLTKGQPCL BACU003219/1-1009 KQQQ--AMKA RQITNTRPLS YTVVTAASFH TKDSTNR--- KPLTKGQPCL 551 600 ENSBTAP00000055066/1-796 PQTQNLLLLS TLTTP-KNHQ ITKKKRESIL LITHMLQREN CKACCGAESS ENSP00000453854/1-1101 TSFNSVDIAS SKAKKGKEKE IAKLKRPTAL KKVILKEREE KKGRLTVDHN ENSTTRP00000008926/1-1101 TSFNSLDITS SKAKKGKEKE IAKLKRPTAL KKVILKEREE KKGRLTVDHN bmy_17841T0/1-1049 TSFNSLDITS SKAKKGKEKE IAKLKRPTAL KKVILKEREE KKGRLTVDHN BACU003219/1-1009 TSFNSLDITS SKAKKGKEKE IAKLKRPTAL KKVILKEREE KKGRLTVDHN 601 650 ENSBTAP00000055066/1-796 WLIGFSPIQW HLKFLNSFSS PHFST-DTGL SMPSDTSLSP ASQNSPYCMT ENSP00000453854/1-1101 LLGSEEPTEM HLDFIDDLPQ EIVSQEDTGL SMPSDTSLSP ASQNSPYCMT ENSTTRP00000008926/1-1101 LLGSEEPIEM HLDFIDDLPQ EIVSQEDAGL SMPSDASLSP ASQNSPYCMT bmy_17841T0/1-1049 LLGSEEPIEM HLDFIDDLPQ EIVSQEDAGL SMPSDASLSP ASQNSPYCMT BACU003219/1-1009 LLGSEEPIEM HLDFIDDLPQ EIVSQEDAGL SMPSDASLSP ASQNSPYCMT 651 700 ENSBTAP00000055066/1-796 PVSQGSPASS GIGSPMASST ITKIHSKRFR DHC----CSP VSHALTLIFL ENSP00000453854/1-1101 PVSQGSPASS GIGSPMASST ITKIHSKRFR EYCNQVLCKE IDECVTLL-L ENSTTRP00000008926/1-1101 PVSQGSPASS GIGSPMASST ITKIHSKRFR EYCNQVLCKE IDECVTLL-L bmy_17841T0/1-1049 PVSQGSPASS GIGSPMASST ITKIHSKRFR EYCNQVLCKE IDECVTLL-L BACU003219/1-1009 PVSQGSPASS GIGSPMASST ITKIHSKRFR EYCNQVLCKE IDECVTLL-L 701 750 ENSBTAP00000055066/1-796 QSLLTQQKEC CFKKDQIQVN KTAKFILHYN CTSVTMSHKR IIKEQLSGSC ENSP00000453854/1-1101 QELVSFQ-ER IYQKDPVRAK ARRRLVMGLR EVTKHMKLNK IKCVIISPNC ENSTTRP00000008926/1-1101 QELVSFQ-ER IYQKDPVRAK ARRRLVMGLR EVTKHMKLNK IKCVIISPNC bmy_17841T0/1-1049 QELVSFQ-ER IYQKDPVRAK ARRRLVMGLR EVTKHMKLNK IKCVIISPNC BACU003219/1-1009 QELVSFQ-ER IYQKDPVRAK ARRRLVMGLR EVTKHMKLNK IKCVIISPNC 751 800 ENSBTAP00000055066/1-796 VRTQSQGACL QGI-QLHEET HELQQGSVIS ITEKSMGSCA DAFYPISQLI ENSP00000453854/1-1101 EKIQSKGGLD EALYNVIAMA REQEIPFVFA LGRKALGRCV NKLVPVSVVG ENSTTRP00000008926/1-1101 EKIQSKGGLD EALYNVIAMA REQEIPFVFA LGRKALGRCV NKLVPVSVVG bmy_17841T0/1-1049 EKIQSKGGLD EALYNVIAMA REQEIPFVFA LGRKALGRCV NKLVPVSVVG BACU003219/1-1009 EKIQSKGGLD EALYNVIAMA REQEIPFVFA LGRKALGRCV NKLVPVSVVG 801 850 ENSBTAP00000055066/1-796 MFNYFMKETV FRSLHFLFHL ARASHVTAFS CKEEWDSCDS LRTILIPP-- ENSP00000453854/1-1101 IFNYFGAESL FNKLVELTEE ARKAYKDMVA AMEQEQAEEA LKNVKKVPHH ENSTTRP00000008926/1-1101 IFNYFGAESL FNKLVELTEE ARKAYKDMVA AMEQEQAEEA LKNVKKVPHH bmy_17841T0/1-1049 IFNYFGAESL FNKLVELTEE ARKAYKDMVA AMEQEQAEEA LKNVKKVPHH BACU003219/1-1009 IFNYFGAESL FNKLVELTEE ARKAYKDMVA AMEQEQAEEA LKNVKKVPHH 851 900 ENSBTAP00000055066/1-796 VGLSSSPSQV FSLAHCQGRG EAFSETPSKE NETNWRNMVE TSDGLETSEN ENSP00000453854/1-1101 MGHSRNPSAA SAISFCSVIS EPISEVNEKE YETNWRNMVE TSDGLEASEN ENSTTRP00000008926/1-1101 MGHSRNPSAA SAISFCSVIS EPISEVNEKE YETNWRNMVE TSDALETSEN bmy_17841T0/1-1049 MGHSRNPSAA SAISFCSVIS EPISEVNEKE YETNWRNMVE TSDALETSEN BACU003219/1-1009 MGHSRNPSAA SAISFCSVIS EPISEVNEKE YETNWRNMVE TSDALETSEN 901 950 ENSBTAP00000055066/1-796 EREVSCKHST SEKPNKLPFD TAPVGKQASL VTAGSTTSAT NPGKSAVGDK ENSP00000453854/1-1101 EKEVSCKHST SEKPSKLPFD TPPIGKQPSL VATGSTTSAT SAGKSTASDK ENSTTRP00000008926/1-1101 EREVSCKHST SEKPSKLAFD TAPVGKQPSS VAAGSTTSAT NPGKPTVSDK bmy_17841T0/1-1049 EREVSCKHST SEKPSKLPFD TAPVGKQPSS VAAGSTTSAT NPGKSTVSDK BACU003219/1-1009 EREVSCKHST SEKPSKLPFD TAPVGKQPSS VAAGSTTSAT NPGKSTVSDK 951 1000 ENSBTAP00000055066/1-796 EEVKPDDLEW ASQQSTETGS LDGSCRDLLN SSITSTTSTL VPGMLEEEDD ENSP00000453854/1-1101 EEVKPDDLEW ASQQSTETGS LDGSCRDLLN SSITSTTSTL VPGMLEEEED ENSTTRP00000008926/1-1101 EDVKPDDLEW ASQQSTETGS LDGSGRDLLN SSITSTTSTL VPGMLEEEDD bmy_17841T0/1-1049 EEVKPDDLEW ASQQSTETGS LDGSGRDLLN SSITSTTSTL VPGMLEEEDD BACU003219/1-1009 EEVKPDDLEW ASQQSTETGS LDGSGRDLLN SSITSTTSTL VPGMLEEEDD 1001 1050 ENSBTAP00000055066/1-796 EEEEEEEDYA HEPISVEVQL NSRIESWVSE TQRTMETLQL GKTLNGSEED ENSP00000453854/1-1101 EDEEEEEDYT HEPISVEVQL NSRIESWVSE TQRTMETLQL GKTLNGSEED ENSTTRP00000008926/1-1101 EDEEEEEDYT HEPISVEVQL NSRIESWVSE TQRTMETLQL GKTLNGSEED bmy_17841T0/1-1049 EXEEEEEDYT HEPISVEVQL NSRIESWVSE TQRTMETLQL GKTLNGSEED BACU003219/1-1009 EDEEEEEDYT HEPISVEVQL NSRIESWVSE TQRTMETLQL GKTLNGSEED 1051 1100 ENSBTAP00000055066/1-796 NAEQSGEEEA EAAEVLEPGM DSEAWTTDHQ ASQEQQKPSN CSSLNKEHSD ENSP00000453854/1-1101 NVEQSGEEEA EAPEVLEPGM DSEAWTADQQ ASPGQQKSSN CSSLNKEHSD ENSTTRP00000008926/1-1101 NAEQSGEEEA EAAEVLEPGV DSEAWTTDHQ ASQEQQKPSN CSSLSKEHSD bmy_17841T0/1-1049 NAEQSGEEEA EAAEVLEPGM DSEAWTTDHQ ASQEQQKPSN CSSLNKEHSD BACU003219/1-1009 NAEQSGEEEA EAAEVLEPGM DSEAWTTDHQ ASQEQQKPSN CSSLNKEHSD 1101 1150 ENSBTAP00000055066/1-796 SNYTPPDL ENSP00000453854/1-1101 SNYTTQTT ENSTTRP00000008926/1-1101 SNYTPPSL bmy_17841T0/1-1049 SNYTPPNL BACU003219/1-1009 SNYTPPNL