KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:28 2014 Check: 00 .. Name: ENSP00000328070/1-291 Len: 338 Check: 4235 Weight: 1.00 Name: ENSBTAP00000055094/1-318 Len: 338 Check: 2371 Weight: 1.00 Name: ENSTTRP00000000529/1-284 Len: 338 Check: 4483 Weight: 1.00 Name: bmy_08650T0/1-284 Len: 338 Check: 4521 Weight: 1.00 Name: BACU001283/1-296 Len: 338 Check: 69 Weight: 1.00 // 1 50 ENSP00000328070/1-291 --MGVAARPP ALRHWFSHSI PLAIFALLLL YLSVRSLG-- ---------- ENSBTAP00000055094/1-318 AAMGVALPGQ MPRRWLHSAI PLAVFALLLV YLWARNLREY SVHSPALGGT ENSTTRP00000000529/1-284 --MRVALPQP VPRRCLRSAI PLAVFTLLLV YLWARSLR-- ---------- bmy_08650T0/1-284 --MRVPLPQP VPRHWLRSAI PLAVFTLLLV YLWARSLR-- ---------- BACU001283/1-296 --MRVPLPQP VPRRWLRSAI PLAIFTLLLV YLWARSLR-- ---------- 51 100 ENSP00000328070/1-291 ---------- ---------- -ARSGCGPRA QPCVPGETAP F--------- ENSBTAP00000055094/1-318 GESRPWGSKA SPKALTALSR LPLSGCGSGT QSCIAEGPPP F--------- ENSTTRP00000000529/1-284 ---------- ---------- -ALSGCRSGA QSCIAREPPP F--------- bmy_08650T0/1-284 ---------- ---------- -ALSGCRPGA QSCIAREPPP F--------- BACU001283/1-296 ---------- ---------- -ALSGCRPGA QSCIAREPPS FQVCSRKGWD 101 150 ENSP00000328070/1-291 ---QVRQESG TLEAPERKQP PCLGPRGMLG RMMRRFHASL KPEGDVGLSP ENSBTAP00000055094/1-318 ---QVQQQSG PVEGAEWEEP QCLGPQGMLG RIMRQFRASL KPEGDVELSQ ENSTTRP00000000529/1-284 ---QVRQQSG PLEAPEREEP QCLGPQGMLG RMMRPFRASL NPERDVELSQ bmy_08650T0/1-284 ---QVRQQSG PLEAPEREGP QCLGPQGMLG RMMRPFRASL NPERDVELSQ BACU001283/1-296 WELQVRQQSG PLEAPEREEP QCLGPQGMLG RMMRPFRASL NPERDVELSQ 151 200 ENSP00000328070/1-291 YLAGWRALVE FLTPLGSVFA FATREAFTKV TDLEARVHGP DAEHYWSLVA ENSBTAP00000055094/1-318 YLAGWRDLVR FVTPLGSIFA FATSEASAKV TALEALVHGP QAAHYTSLGT ENSTTRP00000000529/1-284 YLAGWRELVR FLIPLGSIFA FATSEASAKV TALEALVHGP EAAHYTSLAT bmy_08650T0/1-284 YLAGWRELVR FLAPLGSIFA FATSEASAKV TALEALVHGP EAAHYTSLAT BACU001283/1-296 YLAGWRELVR FLAPLGSIFA FATSEASAKV TALEALVHGP EAAHYTSLAT 201 250 ENSP00000328070/1-291 MAAWERRAGL LEQPGAAPRD PTRSSGSRTL LLLHRALRWS QLCLHRVATG ENSBTAP00000055094/1-318 MVAWER---- ---PEIASS- PSRASGSVSM LVLHRALRWS QLCLHRVATG ENSTTRP00000000529/1-284 MVAWER---- ---PGIAPRL SAGCPGSMTM LLLHRALRWS QLCLHRVATG bmy_08650T0/1-284 MVAWER---- ---PGIAPRL SAGCPGSLTM LLLHRALRWS QLCLHRVATG BACU001283/1-296 MVAWER---- ---PGIAPRL PAGCPGSLTM LLLHRALRWS QLCLHRVATG 251 300 ENSP00000328070/1-291 ALGGPDAGVQ CSDAYRAALG PHHPWLVRQT ARLAFLAFPG RRRLLELACP ENSBTAP00000055094/1-318 MLGGPDAGVQ CSDAYGTALA PHHSWLVRQA AHLAFLAFPG RGRLLKLMCP ENSTTRP00000000529/1-284 MRGGPDAGAQ CSDAYGTALA PHHPWFVRQA AHLAFLAFPS RGRLLELACP bmy_08650T0/1-284 MLGGPDAGAQ CSDAYGTALA PHHPWFVRQA AHLAFLAFPG RGRLLELACP BACU001283/1-296 MLGGPDAGAQ CSDAYGTALA PHHPWFVRQA AHLAFLAFPG RGRLLELACP 301 350 ENSP00000328070/1-291 GATEAEARAA LVRAAGTLED VYNRTQSLLA ERGLLQLA ENSBTAP00000055094/1-318 GARETEARAA VARAAGTLED VYNRTQGLLA ERGLLELA ENSTTRP00000000529/1-284 GSKEAEARNA LVRAARTLED VYNRTQGLLA DGGLLELA bmy_08650T0/1-284 GSKEAEARNA LVRAAGTLED VYNRTQSLLA EGGLLELA BACU001283/1-296 GSKEAEARNA LVRAAGTLED VYNRTQSLLA EGGLLELA