KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:25:29 2014 Check: 00 .. Name: ENSBTAP00000055097/1-947 Len: 992 Check: 6746 Weight: 1.00 Name: ENSTTRP00000011349/1-766 Len: 992 Check: 5904 Weight: 1.00 Name: bmy_19399T0/1-887 Len: 992 Check: 7354 Weight: 1.00 Name: BACU013988/1-921 Len: 992 Check: 8031 Weight: 1.00 // 1 50 ENSBTAP00000055097/1-947 ----MLQQVN GHGSGSAAHS GESLREDLKE LLGGEVPPQQ LNDLTKVNPV ENSTTRP00000011349/1-766 ----MLQQVN GHSSGSDAHG GESLREDLQE FLGGEAPLHQ LDDLTKVNPV bmy_19399T0/1-887 ------MKVN GHSSGSDAHG RESLREDLQE FLGGEAPLHQ LDDLTKVNPV BACU013988/1-921 MPATRTGHVN GHSSGSDAHG GESLREDLQE FLGGEAPLHQ LDDLTKVNPV 51 100 ENSBTAP00000055097/1-947 TLET------ ---------- VLRCLQARYM ADTFYTNAGC TLVAMNPFKP ENSTTRP00000011349/1-766 TLET------ ---------- VLRCLQARYM ADTFYTSAGC TLVALNPFKP bmy_19399T0/1-887 TLETVMSPFE PEFAKGTSAS VLRCLQARYT ADTFYTNAGC TLVALNPFKP BACU013988/1-921 TLETVMSPFE PEFAKGTSAS VLRCLQARYT ADTFYTNAGC TLVALNPFKP 101 150 ENSBTAP00000055097/1-947 VPQLYSPELM REYHAASQPQ TLKPHIFTVG EQTYRNVKSL IEPVNQSVVV ENSTTRP00000011349/1-766 IPQLYSPELM QEYHAAPQPQ KLKPHIFTVG EQTYRNVKSL MEPVNQSIVV bmy_19399T0/1-887 IPQLYSPELM QEYHAAPQPQ KLKPHIFTVG EQTYRSVKSL IEPVNQSVVV BACU013988/1-921 IPQLYSPELM QEYHAAPQPQ KLKPHIFTVG EQTYRSVKSL IEPVNQSVVV 151 200 ENSBTAP00000055097/1-947 SGESGAGKTW TSRCLMKFYA VVAASPMSWE SHKVAERIEQ RILNSNPVME ENSTTRP00000011349/1-766 SGESGAGKTW TSRCLMKFYA VVAASPTSWE NHKIAERIEQ RILNSNPVME bmy_19399T0/1-887 SGESGAGKTW TSRCLMKFYA VVAASPTSWE NHKVAERIEQ RILNSNPVME BACU013988/1-921 SGESGAGKTW TSRCLMKFYA VVAASPTSWE NHKIAERIEQ RILNSNPVME 201 250 ENSBTAP00000055097/1-947 AFGNACTLRN SNSSRFGKFI QLQLNGAQQM TGAAVQTYLL EKTRVACQAP ENSTTRP00000011349/1-766 AFGNACTLRN NNSSRFGKFI QLQLNRAQQM TGAAVQTYLL EKTRVACQAS bmy_19399T0/1-887 AFGNACTLRN NNSSRFGKFI QLQLNR---- --WSFAFFII LQTP------ BACU013988/1-921 AFGNACTLRN NNSSRFGKFI QLQLNRAQQM TGAAVQTYLL EKTRVACQAS 251 300 ENSBTAP00000055097/1-947 SERNFHIFYQ IYKGAHAEER VRWRLPEGAA FSWLPHPERT LEEDCFEVTR ENSTTRP00000011349/1-766 NERNFHIFYQ ICKGASADER LQWHLPEGAA FSWLPNPERT LEEDCFEVTR bmy_19399T0/1-887 ---------S ICKGASADER LQWHLPEGAA FSWLPNPERT LEEDCFEVTR BACU013988/1-921 SERNFHIFYQ ICKGASADER LQWHLPEGAA FSWLPNPERT LEEDCFEVTR 301 350 ENSBTAP00000055097/1-947 EAMLHLGIDA PTQNNIFQAL AGLLHLGNTR FADSGNEAQP CPLVDDAQCS ENSTTRP00000011349/1-766 EAMLHLGIDA PTQNNIFQAL AGLLHLGNTR FADSGNEAQP CPLMDDAKCS bmy_19399T0/1-887 EAMLLLGIDA PTQNNIFQAL AGLLHLGNTR FADSGNEAQP CPLMDDAKCS BACU013988/1-921 EAMLLLGIDA PTQNNIFQAL AGLLHLGNTR FADSENEAQP CPLMDDAECS 351 400 ENSBTAP00000055097/1-947 VGTSALLLGL PEDHLLETLQ IRTIRAGRGQ QVFQKPCSQA ECNTRRDCLA ENSTTRP00000011349/1-766 VRTSASLLRL PEDPLLETLR IRTIRAGRQQ QVFQKPCSRA ECDTRRDCLA bmy_19399T0/1-887 VRTSASLLRL PEDPLLETLR IRTIRAGRRQ QVFRKPCSRA ECDTRRDCLA BACU013988/1-921 VRTSASLLRL PEDALLETLR IRTIRAGRRQ QVFRKPCSRA ECDTRRDCLA 401 450 ENSBTAP00000055097/1-947 KLVYARLFDW LVSVINSSIC AAPDSWTTFI GLLDVYGFES FPNNSLEQLC ENSTTRP00000011349/1-766 KLVYARLFDW LVSVINSSIC ADPGSWTTFI GLLDVYGFES FPTNSLEQLC bmy_19399T0/1-887 KLVYARLFDW LVSVINSSIC ADPDSWTTFI GLLDVYGFES FPTNSLEQLC BACU013988/1-921 KLVYARLFDW LVSVINSSIC ADPDSWTTFI GLLDVYGFES FPTNSLEQLC 451 500 ENSBTAP00000055097/1-947 INYANEKLQQ HFVAHYLRAQ QEEYAMEGLA WSFVSYQDNQ PCLDLIEGSP ENSTTRP00000011349/1-766 INYANEKLQX XXXXXXXXXX XX-------- ---------- ---------- bmy_19399T0/1-887 INYANEKLQQ HFVAHYLRAQ QE-------- ---------- ---------- BACU013988/1-921 INYANEKLQQ HFVAHYLRAQ QEEYTAEGLE WSTVSYQDNQ TCLDLIEGSP 501 550 ENSBTAP00000055097/1-947 VSICSLINEE CRLNRPSSAA QLQTRIESAL TGHPRLGRDR LSPEPSFIVL ENSTTRP00000011349/1-766 ---------- ---------- ---------- ---------- ---------- bmy_19399T0/1-887 ---CRL---- ---NRPSSAA QLQTRIESSL AGSPCLGHNK LSREPSFIVV BACU013988/1-921 ISICSLI--- ---NEVGGAA QLQTRIESSL AGSPCLGHNK LSREPSFIVV 551 600 ENSBTAP00000055097/1-947 HYAGPVRYRT AGLVEKNKDP VPPELTSLLQ QSQDPLLKVL FPADPEDKSP ENSTTRP00000011349/1-766 ---------- ---------- ---------- ---------- ---------- bmy_19399T0/1-887 HYAGSVRYHT AGLVEKNKDP IPPELTRLLQ QSQDPLL--- ---------- BACU013988/1-921 HYAGSVRYHT AGLVEKN--- ---------- ---------- ---------- 601 650 ENSBTAP00000055097/1-947 EEPSGQNRAP VLTVVSKFKA SLEQLLQVLH GTTPHYIRCI KPNSQAQAQI ENSTTRP00000011349/1-766 ---------- ---------- ---------- ---------- ---------- bmy_19399T0/1-887 ---------- --------KA SLEQLLQVLH STTPHYIRCI KPNSQGRAQM BACU013988/1-921 ---------- --------KA SLEQLLQVLH STTPHYIRCI KPNSQGRAQM 651 700 ENSBTAP00000055097/1-947 FHREEVLSQL EACGLVETIH ISAAGFPIRV SHRNFMERYQ -LLRRLRPAI ENSTTRP00000011349/1-766 ---------- ---------- --XXXXXXXV SHRNFLKRYE -LLRRLRPGA bmy_19399T0/1-887 FHQEEVLSQL EACGLVETIH ISAAGFPIRG DIRKPPGPWL ILLLFLVCGV BACU013988/1-921 FHQEEVLSQL EACGLVETIH ISAAGFPIRV SHRNFLERYE -LLRRLCPGV 701 750 ENSBTAP00000055097/1-947 TPSPHGPCPD GGR----SEC PPCTEPATLQ GLLQEILHTL PA-------- ENSTTRP00000011349/1-766 APSPHGPPPD EGR----SGW SPHSE-ATLQ ALLQDILHTL PALAQAPAEA bmy_19399T0/1-887 SFGSLQRGTG QLRWSEPSEW SPHSEQATLQ ALLQDILHTL PALARAPAEA BACU013988/1-921 APSPHGPPPD EGR----SEW SPHSEQATLQ ALLQDILHTL PALARAPAEA 751 800 ENSBTAP00000055097/1-947 ---PLHCGRT KVFMTDSTLE LLERGRAQVL EQCARHIQRG WRRHRCRTQA ENSTTRP00000011349/1-766 MPAPMHCGRT KVFMTDSTLE LLERGRAQVL EQCARSIQGG WRRHWGRKQE bmy_19399T0/1-887 TPAPVHCGRT KVFMTDSTLE LLERGRAQVL EQCARCIQGG WRRHRGRKQE BACU013988/1-921 TPAPVHCGRT KVFMTDSTLE LLERGRAQVL EQCARCIQGG WRRHRGRKQE 801 850 ENSBTAP00000055097/1-947 RRRRAAVLIQ AAVRSWLTRK HIQQLHAAAT VIKRAWREWR IRMAFLASEE ENSTTRP00000011349/1-766 RQRRAAVLIQ AAVRSWLTRK HIQRLHAAAT VIKRAWQEWR IRMAFLASKE bmy_19399T0/1-887 RQRRAAVLIQ AAVRSWLTRK HIQRLHAAAT VIKRAWQEWR IRMAFLASKE BACU013988/1-921 RQRRAAVLLQ AAVRSWLTRK HIQRLHAAAT VIKRAWQEWR IRMAFLASKE 851 900 ENSBTAP00000055097/1-947 LDGVEEKHSP HAPCSPGSSP LPPAQTRLQG AITRLWPLGL ALANAAVGVH ENSTTRP00000011349/1-766 LDGVEEQRSS QVTCSPSSSP LPQAQTRLLG AVTRFWPLGL VLANAAVGAH bmy_19399T0/1-887 LDGVEEQHSS QVTCSPSSLP LPQAQTRLLG AVTRFWPLGL VLANAAVGAR BACU013988/1-921 LDGVEEQHSS QVTCSPSSFP LPQAQTRLLG AVTRFWPLGL VLANAAVGAR 901 950 ENSBTAP00000055097/1-947 GFQRKLVVFA CLQLPVGSPR SCAVQTAQEQ AGVLSIRALP QGSIRFHCRK ENSTTRP00000011349/1-766 GFRRKLVVFA CLPLPVGSPS SYTVQTAQEQ AGVTSIRALP QGSIKFHCRK bmy_19399T0/1-887 GFRRKLVVFA CLPLPVGSPS SYTVQTAQEQ AGVTSIRALP QGSIKFHCRK BACU013988/1-921 GFRRRLVVFA CLPLPVGSLS SYTVQTAQEQ AGVTSIRALP QGSIKFHCRK 951 1000 ENSBTAP00000055097/1-947 SPLRYADTCP GPSPDSVTGF NQILLERHRP GHV------- -- ENSTTRP00000011349/1-766 SPLRYADICP EPSPNSVTGF NQILLERHRL GHVISSILTW GP bmy_19399T0/1-887 SPLRYADICP EPSPDTVTGF NQILLERHRL GHV------- -- BACU013988/1-921 SPLRYADICP EPSPDTVTGF NQILLERHRL GHV------- --