KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:44 2014 Check: 00 .. Name: ENSTTRP00000001047/1-1463 Len: 1504 Check: 1249 Weight: 1.00 Name: bmy_14856T0/1-1368 Len: 1504 Check: 2477 Weight: 1.00 Name: BACU002456/1-1368 Len: 1504 Check: 348 Weight: 1.00 Name: ENSP00000296137/1-1478 Len: 1504 Check: 4341 Weight: 1.00 Name: ENSBTAP00000055120/1-1474 Len: 1504 Check: 1170 Weight: 1.00 // 1 50 ENSTTRP00000001047/1-1463 MASTSVESQL QRIIRDLQDA VTELSREFKE AGEPVTDDST SLHKFSYKLE bmy_14856T0/1-1368 MASTSVESQL QRIIRDLQDA VTELSREFKE TGEPVTDDST SLHKFSYKLE BACU002456/1-1368 MASTSVESQL QRIIRDLQDA VTELSREFKE AGEPVTDDST SLHKFSYKLE ENSP00000296137/1-1478 MASTNAESQL QRIIRDLQDA VTELSKEFQE AGEPITDDST SLHKFSYKLE ENSBTAP00000055120/1-1474 MASTSAESQL QRIIRDLQDA VTELSRESKE AGEPITDDST NLHKFSYKLE 51 100 ENSTTRP00000001047/1-1463 YLLQFDQKEK ATLLGNKKDY WDYFCACLAK VKGANDGIRF VKSISELRTS bmy_14856T0/1-1368 YLLQFDQKEK ATLLGNKKDY WDYFCACLAK VKGANDGIRF VKSISELRTS BACU002456/1-1368 YLLQFDQKEK ATLLGNKKDY WDYFCACLAK VKGANDGIRF VKSISELRTS ENSP00000296137/1-1478 YLLQFDQKEK ATLLGNKKDY WDYFCACLAK VKGANDGIRF VKSISELRTS ENSBTAP00000055120/1-1474 YLLQFDQKEK ATLLGNKKDY WDYFCACLAK VKGANDGIRF VKSISELRTS 101 150 ENSTTRP00000001047/1-1463 LGKGRAFIRY SLVHQRLADT LQQCFMNTKV TSDWYYARSP FLKPKLSSDI bmy_14856T0/1-1368 LGKGRAFIRY SLVHQRLADT LQQCFMNTKV TSDWYYARSP FLKPKLSSDI BACU002456/1-1368 LGKGRAFIRY SLVHQRLADT LQQCFMNTKV TSDWYYARSP FLKPKLSSDI ENSP00000296137/1-1478 LGKGRAFIRY SLVHQRLADT LQQCFMNTKV TSDWYYARSP FLQPKLSSDI ENSBTAP00000055120/1-1474 LGKGRAFIRY SLVHQRLADT LQQCFMNTKV TSDWYYARSP FLKPKLSSDI 151 200 ENSTTRP00000001047/1-1463 VGQLYELTDI QFDLASRGYD LDAAWPTFAR RTLGTGSSAY LWRPPSRSSS bmy_14856T0/1-1368 VGQLYELTDI QFDLASRGYD LDAAWPTFAR RTLGTGSSAY LWRPPSRSSS BACU002456/1-1368 VGQLYELTDI QFDLASRGYD LDAAWPTFAR RTLGTGSSAY LWRPPSRSSS ENSP00000296137/1-1478 VGQLYELTEV QFDLASRGFD LDAAWPTFAR RTLTTGSSAY LWKPPSRSSS ENSBTAP00000055120/1-1474 VGQLYELTDV QFDLASRGYD LDAAWPTFAR RTLATSSSAY LWRPPSRSSS 201 250 ENSTTRP00000001047/1-1463 MSSLVSSYLQ TQEMTSHLDL SNPLNHEALE GFDELRLELD QLEVREKQLK bmy_14856T0/1-1368 MSSLVSSYLQ TQEMASHLDL SNPLNHEALE GFDELRLELD QLEVREKQLK BACU002456/1-1368 MSSLVSSYLQ TQEMASHLDL SNPLNHEALE GFDELRLELD QLEVREKQLK ENSP00000296137/1-1478 MSSLVSSYLQ TQEMVSNFDL NSPLNNEALE GFDEMRLELD QLEVREKQLR ENSBTAP00000055120/1-1474 MSSLVSSYLQ TQEMASSLDL SNPLNSESLE GFDEMRLELD QLEVREKQLQ 251 300 ENSTTRP00000001047/1-1463 EQMQQREREN QELRAAVSLH GEQLQAERER GRAAAEDNLR LAGVVAALQE bmy_14856T0/1-1368 EQMQQRDREN EELRAAVSLR GEQLQAERER ARAAAEDNLR LAGMVTALRK BACU002456/1-1368 EQMQQRDREN EELRAAVSLR GEQLQAERER GRAAAEDNLR LAGMVAALRK ENSP00000296137/1-1478 ERMQQLDREN QELRAAVSQQ GEQLQTERER GRTAAEDNVR LTCLVAELQK ENSBTAP00000055120/1-1474 ERMQQLDREN QELKAAISLQ GEQLQVERER GRATAEDNSR LADMVAALQK 301 350 ENSTTRP00000001047/1-1463 QWEVTQATQN TVKELQACLQ ALELGASEKE EDYLSALRRL ESLLQPLARE bmy_14856T0/1-1368 QWEVTQATQN TVKELQMCLQ ALELGASEKE EEYRSALRRL ESLLQPLARE BACU002456/1-1368 QWEVTQATQN TVKELQMCLQ ALELGASEKE EDYRSALRRL ESLLQPLARE ENSP00000296137/1-1478 QWEVTQATQN TVKELQTCLQ GLELGAAEKE EDYHTALRRL ESMLQPLAQE ENSBTAP00000055120/1-1474 QWEVTQAMQN TMVELHTCLQ ALELGAAEKE EDYRSALRRL ESLLKPLARD 351 400 ENSTTRP00000001047/1-1463 LEATRDSLGR KDQG--SADV PDQLSAAEQK ADMALDAKGR QKRIPSDSPL bmy_14856T0/1-1368 LEATRDSVGR KDQR--SADV PDQLGAAEQE ADVALDAKGR QKRIPSDSPL BACU002456/1-1368 LEATRDSLGR KDQR--SADV PDQLGAAEQK ADVALDAKGR QKRIPSDSPL ENSP00000296137/1-1478 LEATRDSLDK KNQH--LASF PGWLAMAQQK ADTASDTKGR QEPIPSDAAQ ENSBTAP00000055120/1-1474 LKATHDSPHR RNQDIPAANV LEQLAAAEQM AAPALDAKER EERVYSDSAL 401 450 ENSTTRP00000001047/1-1463 ETQELGEKL- -LERE----- ------STQL EQLAKELQLK EEARASLERL bmy_14856T0/1-1368 ETQELGEKL- -LERESTWVQ ELNRQQSTQL EQLAKELQLK EEARASLERL BACU002456/1-1368 ETQELGEKL- -LERESTWVQ ELNRQQSTQL EQLAKELQLK EEARASLERL ENSP00000296137/1-1478 EMQELGEKLQ ALERERTKVE EVNRQQSAQL EQLVKELQLK EDARASLERL ENSBTAP00000055120/1-1474 ETQELAVRLQ ALESKNPRIQ ELSGQQAVQL EPLAGELQLK EEAQTCLERL 451 500 ENSTTRP00000001047/1-1463 VEEMAPLREE LSRKGQEAAQ LQRQLHESLA HLSSLEEELA EGRREEQRRQ bmy_14856T0/1-1368 VEEMAPLREE LSRKGQEAAQ LQRQLQESSA HLSSLEDKLA EGRREEQRRQ BACU002456/1-1368 VEEMAPLREE LSRKGQEAAQ LQRQLQESLA HLSSLEDELA EGRRQEQRRQ ENSP00000296137/1-1478 VKEMAPLQEE LSGKGQEADQ LWRRLQELLA HTSSWEEELA ELRREKKQQQ ENSBTAP00000055120/1-1474 VEETALLRDE LSCKGQEAAQ LRRQLQESLG HLGSLEEELT EARREARQRL 501 550 ENSTTRP00000001047/1-1463 EEKGLLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14856T0/1-1368 EEKELLEQEA RSLTRQLQLL ETQLAQVSQH VSDLEEQRKQ LIQDKDHLSQ BACU002456/1-1368 EEKELLEQEA RSLTRQLRLL ETQLAQVSQH VSDLEEQRKQ LIQDKDRLSQ ENSP00000296137/1-1478 EEKELLEQEV RSLTRQLQFL ETQLAQVSQH VSDLEEQKKQ LIQDKDHLSQ ENSBTAP00000055120/1-1474 EEKELLEQEA RSLTRQLQLL ETQLAQVSQH VSDLEEQKKQ LIQDRDHLSQ 551 600 ENSTTRP00000001047/1-1463 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- -XXXXXXXXX bmy_14856T0/1-1368 RVGALERLAA QSGPELPLAA EEREAL---S STLQQACEEL EEELEEEPRG BACU002456/1-1368 RVGALERLAA QSGPELPVAA EEREAL---S STLQQACEKL EEKLEEEPRG ENSP00000296137/1-1478 QVGMLERLAG PPGPELPVAG EKNEALVPVN SSLQEAW--- -GKPEEEQRG ENSBTAP00000055120/1-1474 KVGMLEQLAA QLGPGLPDEA ETLEAL---N SVPQQAC--- -EMPEEEQRG 601 650 ENSTTRP00000001047/1-1463 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14856T0/1-1368 PWEGQVDDPR MQGAGQEKKL QQANRELEEE LQNVVERNQL LEDKLQALQA BACU002456/1-1368 PWEEQVDDPR MQGAGQEKKL QQANRELEKE LQNVVERNQL LEDKLQALQA ENSP00000296137/1-1478 LQEAQLDDTK VQEGSQEEEL RQANRELEKE LQNVVGRNQL LEGKLQALQA ENSBTAP00000055120/1-1474 LREGQTDNPR VHGTGMEDQL QQAHRELEKE LQNVAERNHI LEEKLQALQA 651 700 ENSTTRP00000001047/1-1463 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14856T0/1-1368 DYQALQQRET AIQGSLASLQ SEQASIRRMG DQMEASLLAV KKAKETMRAH BACU002456/1-1368 DYQALQQREA AIQGSLASLQ SEQASIRRMG DQMEASLLAV KKAKETMRAH ENSP00000296137/1-1478 DYQALQQRES AIQGSLASLE AEQASIRHLG DQMEASLLAV RKAKEAMKAQ ENSBTAP00000055120/1-1474 DYQALQQREA ASQGSLASLE SEQ------- ---------- --TEASMWAH 701 750 ENSTTRP00000001047/1-1463 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14856T0/1-1368 VAEKEAALQS KEAECQQLRE QVEQCRQLAE ARAGELRALE DRCRQQTQLI BACU002456/1-1368 VAEKEAALQS KEAECQQLRE QVEQCRQLAE ARAGELRALE DRCRQQTQLI ENSP00000296137/1-1478 MAEKEAILQS KEGECQQLRE EVEQCQQLAE ARHRELRALE SQCQQQTQLI ENSBTAP00000055120/1-1474 MAAKEAALQS KEAECRRLRE QVEQGQQLAE ARDGELQALA GQCQQQTQLI 751 800 ENSTTRP00000001047/1-1463 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14856T0/1-1368 ETLTADKSQQ GSSPPQDHAS QELAAQLALS QAQLESQQGE AQRLQAGVLD BACU002456/1-1368 ETLTADKSQQ GSSTPQDHTS QELAAQLALS QAQLESQQGE AQRLQAGVLD ENSP00000296137/1-1478 EVLTAEKGQQ GVGPPTDNEA RELAAQLALS QAQLEVHQGE VQRLQAQVVD ENSBTAP00000055120/1-1474 ETLRADGGQQ GLSPPEDHAP QELAVQLALS QAQLEIHQGE ARRLQAMVVE 801 850 ENSTTRP00000001047/1-1463 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14856T0/1-1368 LQAKLQAALG DREKVQSQLS VAEAALREQK ALVQQLKEQN KALNRAHVQE BACU002456/1-1368 LQAKLQAALG DREKVQSQLS VAEAALREHK ALVQQLKEQN KALNRAHVQE ENSP00000296137/1-1478 LQAKMRAALD DQDKVQSQLS MAEAVLREHK TLVQQLKEQN EALNRAHVQE ENSBTAP00000055120/1-1474 LQAKLQAALG DQEKVKSQLS VAETALTEHK ALVQRLKEQN EALNRAHVQE 851 900 ENSTTRP00000001047/1-1463 XXQCSEREGA LQEERAGEAQ RR-EELQVV- EELSQATGSS EEAQLEPAEL bmy_14856T0/1-1368 LLQCSEREGA LQEESAGEAQ RREEELQVVW EELSQAKGSS EEVQLEHAEL BACU002456/1-1368 LLQCSEREGA LQEERAGEAQ RREEELQVVW EELSQAKGGS EEAQLEHAEL ENSP00000296137/1-1478 LLQCSEREGA LQEERADEAQ QREEELRALQ EELSQAKCSS EEAQLEHAEL ENSBTAP00000055120/1-1474 LLQCSEREGA LREERAEEAE RREEELQILR EELSRVRCSS EEAHLEHTEL 901 950 ENSTTRP00000001047/1-1463 QEQPHRANTD MAELGIQVCA LTAEKEPLEG ALARAMQELQ DAKEAASKER bmy_14856T0/1-1368 QKQPHRANTD MAELGIQVCV LTAEKEPVEG ALTRAMQELQ DAKEASSKER BACU002456/1-1368 QKQPHRATTD MAELGIQVCA LTAEKEPVEG ALAHAMQELQ DAKEASSKEL ENSP00000296137/1-1478 QEQLHRANTD TAELGIQVCA LTVEKERVEE ALACAVQELQ DAKEAASRER ENSBTAP00000055120/1-1474 QEQLHHANMD TAELGIQVCA LTAEKERVEG ALAHTIQELR EAQEAASRER 951 1000 ENSTTRP00000001047/1-1463 EGLEHQVAGL RREKESLQGK LKAAEEAADS LPGLQAQLAQ AEQQAQSIRE bmy_14856T0/1-1368 EGLEHQVAGL RREKESLQGK LKAAEEAAGS LPGLQAQLAQ AEQQAQSIRE BACU002456/1-1368 EGLEHQVAGL RQEKESLQGK LKAAEEAAGS LPGLQAQLAQ AEQQAQSIRE ENSP00000296137/1-1478 EGLERQVAGL QQEKESLQEK LKAAKAAAGS LPGLQAQLAQ AEQRAQSLQE ENSBTAP00000055120/1-1474 EGLEHQVAGL RREKESLQEQ LRVAEETAGS LPGLQARLAQ AEQHAQSLQE 1001 1050 ENSTTRP00000001047/1-1463 TARQELDTLK FQLSTEIMDY QSRLKTSSEE CRSLRGQLEE QGRQLLAAEE bmy_14856T0/1-1368 TARQGLDTLK FQLSTEIMDY QSRLKTSSEE CRSLRGQLEE QGRQLQAAEE BACU002456/1-1368 TARQELDTLK FQLSTEIMDY QSRLKTSSEE CRSLRGQLEE QGRQLQAAEE ENSP00000296137/1-1478 AAHQELNTLK FQLSAEIMDY QSRLKNAGEE CKSLRGQLEE QGRQLQAAEE ENSBTAP00000055120/1-1474 ASRQELDTLK FQLSTEMMDY QKRLKTSSEE CRTLRGQLEE QGRQLQATKE 1051 1100 ENSTTRP00000001047/1-1463 AVGKLKASQA DAAEKLSCTG KHLAECQAAM LRKDEEGAAL RQDLDRTQKE bmy_14856T0/1-1368 AVGKLKAAQA DAAEKLSRTS KHLAECQAAM LRKDEEGAAL RQDLDRTQKE BACU002456/1-1368 AVGKLKAAQA DAAEKLSCTS KHLAECQAAM LRKDEEGAAL RQDLDRTQKE ENSP00000296137/1-1478 AVEKLKATQA DMGEKLSCTS NHLAECQAAM LRKDKEGAAL REDLERTQKE ENSBTAP00000055120/1-1474 AEGKLKAAQA DVQEKLSCTS KHLAECQAAM LRKDEEGAAL RQDLDRTQKE 1101 1150 ENSTTRP00000001047/1-1463 LEKATTKIQE YYNRLCQEAT DREKNDQKML ADLDDLNRTK KFLEERLIEL bmy_14856T0/1-1368 LEKATTKIQE YYNRLCQEAT DREKNDQKML ADLDDLNRTK KYLEERLIEL BACU002456/1-1368 LEKATTKIQE YYNRLCQEAT DREKNDQKML ADLDDLNRTK KYLEERLIEL ENSP00000296137/1-1478 LEKATTKIQE YYNKLCQEVT NRERNDQKML ADLDDLNRTK KYLEERLIEL ENSBTAP00000055120/1-1474 LERATTKAQE YYNRLCQEAA EREKNDQKML ADLDDLNRTK KYLEERLIEL 1151 1200 ENSTTRP00000001047/1-1463 LRDKDALWQK SDALEFQQKL SAEERWLGDT EANYCFDCKR EFSWMVRRHH bmy_14856T0/1-1368 LRDKDALWQK SDALEFQQKL SAEERWLGDT EANYCFDCKR EFSWMVRRHH BACU002456/1-1368 LRDKDALWQK SDALEFQQKL SAEERWLGDT EANQCFDCKR EFSWMVRRHH ENSP00000296137/1-1478 LRDKDALWQK SDALEFQQKL SAEERWLGDT EANHCLDCKR EFSWMVRRHH ENSBTAP00000055120/1-1474 LRDKDALWQK SDALEFQQKL SAEERWPGDM EANHCLDCKR EFSWMVRRHH 1201 1250 ENSTTRP00000001047/1-1463 CRICGHIFCY YCCNNYAVSK HSGKKERCCQ ACFQKLSEGP ESPDSTSSGT bmy_14856T0/1-1368 CRICGHIFCY YCCNNYAVSK HSSKKERCCQ ACFQKLSEGP GSPDSTSSGT BACU002456/1-1368 CRICGHIFCY YCCNNYAVSK HSSKKERCCQ ACFQKLSEGP GSPDSTSSGT ENSP00000296137/1-1478 CRICGRIFCY YCCNNYVLSK HGGKKERCCR ACFQKLSEGP GSPDSSGSGT ENSBTAP00000055120/1-1474 CRICGRIFCY YCCNNYAVSK HGGKKERCCR ACFRKLSESP GSPNSSSSGT 1251 1300 ENSTTRP00000001047/1-1463 SQGEPSPARS PAQAAPQATG GQGANTDCRP PDDAVFDIIT DEELCQIQES bmy_14856T0/1-1368 SQGEPSPARS PAQAAPQATR GQGANTDCRP PDDAMFDIIT DEELCQIQES BACU002456/1-1368 SQGEPSPARS PAQAAPQATR GQGANTDCRP PDDAVFDIIT DEELCQIQES ENSP00000296137/1-1478 SQGEPSPALS PASPGPQATG GQGANTDYRP PDDAVFDIIT DEELCQIQES ENSBTAP00000055120/1-1474 SQGEPSPTRS PA----QATG GQGANTDCRP PDDAAFDIIT DEELCQIQES 1301 1350 ENSTTRP00000001047/1-1463 GSSLPETPTE TDSLDPNVAE X--------- ---------- -XXXXXXXXX bmy_14856T0/1-1368 XSSLPETPTE TDSLDPNVAE H--------- ---------- -QAGTVRGEP BACU002456/1-1368 GSSLPETPTE TDSLDPNVAE H--------- ---------- -QAGTVRGEP ENSP00000296137/1-1478 GSSLPETPTE TDSLDPNAAE Q--------- ---------- -DTTSTSLTP ENSBTAP00000055120/1-1474 GSSLPETPTE TDSLDPNVAE HISLGGSEDL CRFICNGCTC RDTTSTSLTP 1351 1400 ENSTTRP00000001047/1-1463 XXXXXXXXXX XXXXXXXXXX XXXIKLPLTV EEIANFGESN RELFVRSSTY bmy_14856T0/1-1368 SSPSSRP--- --SVAVTSSP QRGLECTVRA SQRS-WKEGR RQLVV----- BACU002456/1-1368 SSPSSRP--- --SVAVTSSP QRGLECTVRA SQRS-WKEGR RQLVV----- ENSP00000296137/1-1478 EDTEDMPVGQ DSEICLLKSG ELMIKVPLTV DEIASFGEGS RELFVRSSTY ENSBTAP00000055120/1-1474 EDAEDMPVGQ DSEICLLKSG ELMIKLPLTV EEIANFGEGS RELFVRSSTY 1401 1450 ENSTTRP00000001047/1-1463 SLIPITVAEA GLTISWVFSS DPKSISFSVV YREAEDTPLD QCKVLIPTTR bmy_14856T0/1-1368 ---------- -----WMVKR A--------- ---------- ---------- BACU002456/1-1368 ---------- -----WMVKQ A--------- ---------- ---------- ENSP00000296137/1-1478 SLIPITVAEA GLTISWVFSS DPKSISFSVV FQEAEDTPLD QCKVLIPTTR ENSBTAP00000055120/1-1474 SLIPITVAEA GLTISWVFSS DPKSISFSVV FQEAEDTPLD QCKVLIPTTR 1451 1500 ENSTTRP00000001047/1-1463 CNSHKENIQG QLKVRTPGIY MLIFDNTFSR FVSKKVFYHL TVDWPVIYDG bmy_14856T0/1-1368 ---------- ---------- ---------- ---------- ---------- BACU002456/1-1368 ---------- ---------- ---------- ---------- ---------- ENSP00000296137/1-1478 CNSHKENIQG QLKVRTPGIY MLIFDNTFSR FVSKKVFYHL TVDRPVIYDG ENSBTAP00000055120/1-1474 CNSHKENIQG QLKVRTPGIY LLIFDNTFSR FVSKKVFYHL TVDRPVIYDG 1501 1550 ENSTTRP00000001047/1-1463 SDFP bmy_14856T0/1-1368 ---- BACU002456/1-1368 ---- ENSP00000296137/1-1478 SDFL ENSBTAP00000055120/1-1474 SDFP