KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:25:45 2014 Check: 00 .. Name: ENSBTAP00000055124/1-891 Len: 1110 Check: 1418 Weight: 1.00 Name: bmy_09437T0/1-667 Len: 1110 Check: 7942 Weight: 1.00 Name: ENSTTRP00000010657/1-976 Len: 1110 Check: 2066 Weight: 1.00 Name: BACU009787/1-960 Len: 1110 Check: 2108 Weight: 1.00 // 1 50 ENSBTAP00000055124/1-891 ---------- ---------- ---------- ---------- ---------- bmy_09437T0/1-667 ---------- ---------- ---------- MFHQR----- ---------- ENSTTRP00000010657/1-976 ARARRAEKLR RWRGSLTEQE PPTRPGAELP PQAQRGGPRV RFEDGAVFLA BACU009787/1-960 ---------- ---------- -MRTLFSLLC LFKRRKEPRV G--------K 51 100 ENSBTAP00000055124/1-891 ---------- ---------- ---------- --QACIDENL DVVKFLVENG bmy_09437T0/1-667 CCIVRAQSSV WHGVELSKYL LSKWMDF--- SFQACIDENL DMVKFLVENG ENSTTRP00000010657/1-976 ACSSGDTDEV RGLLARGADV DTANVDGLTA LHQACIDENV DMVKFLVENG BACU009787/1-960 ACAALCGGVL LGATAPDAAV VAGESAHPAR LVPACIDENL DMVKFLVENG 101 150 ENSBTAP00000055124/1-891 ASVNQQDNEG WTPLHAAASC GYLNIAEYFI NHGASVGIVN SEGEVPSDLA bmy_09437T0/1-667 ANVNQQDNEG WTPLHAAASC GYLNIAEYFI NHGASVGVVN SEGEVPSDLA ENSTTRP00000010657/1-976 ASVNQQDSEG WTPLHAAASC GHLNIAEYFI NHGASVGVVN SEGEVPSDLA BACU009787/1-960 ASVNQQDNEG WTPLHAAASC GYLNIAEYFI NHGASVGVVN SEGEVPSDLA 151 200 ENSBTAP00000055124/1-891 EEPAMKDLLL EQVKKQGLDL EQARRQEEQQ MLQDARQWLN SGRIADVRQA bmy_09437T0/1-667 EEPAMKDLLL QQVKKQGVDL EQSRKAEEQQ MLQDARQWLN SGKIQDVRQA ENSTTRP00000010657/1-976 EEPAMKDLLL QQVKKQGVDL EQSRKAEEQQ MLQDARQWLN SGKIQDVRQA BACU009787/1-960 EEPAMKDLLL QQVKKQGVDL EQSRKAEEQQ MLQDARQWLN SGKIQDVRQA 201 250 ENSBTAP00000055124/1-891 RSGATALHVA AAKGYSEVLR ---LLIQAGY ELNVQDHDGW TPLHAAAHWG bmy_09437T0/1-667 RSGATALHVA AAKGYSEVLR ---LLTQAGY ELNVQDRDGW TPLHAAAHWG ENSTTRP00000010657/1-976 RSGATALHVA AAKGYYEVLR ---LLTQAGY ELNVQDRDGW TPLHAAAHWG BACU009787/1-960 RSGATALHVA AAKGYSEVLS TSFLVCVAGY ELNVQDRDGW TPLHAAAHWG 251 300 ENSBTAP00000055124/1-891 VKEACSILAE ALCDMDIRNK LGQTPFDVAD EGLVEHLETL QKRQSV---- bmy_09437T0/1-667 VKEACSILAE ALCDMDVRSK LGQTPFDVAD EGLVEHLEML QKKQSV---- ENSTTRP00000010657/1-976 VKEACSILAE ALCDMDVRSK LGQTPFDVAD EGLVEHLEML QKKQSV---- BACU009787/1-960 VKEACSILAE ALCDMDVRSK LGQTPFDVAD EGLVEHLEML QKKQSVIFDG 301 350 ENSBTAP00000055124/1-891 ---------- -----LRSEK ETRNKLIESD LNSKLHSRLF KNKEKMLCEE bmy_09437T0/1-667 ---------- -----LRSEK ETRNKLIESD LNSKLHGRLF KNKEKMLYEE ENSTTRP00000010657/1-976 ---------- -----LRSEK ETRNKLIESD LNSKLHGRLF KNKEKMLYEE BACU009787/1-960 FVVCALLLSA AQEDHLRSEK ETRNKLIESD LNSKLHGRLF KNKEKMLYEE 351 400 ENSBTAP00000055124/1-891 ETPKSQRVE- ESKESSSSGS EEDEGEDEAE KEAGGPEAGR P--------- bmy_09437T0/1-667 ETPKPQETED ENKESSSSSS DEDEGADEAS ESETEKEAD- ---------- ENSTTRP00000010657/1-976 ETPKPQEMED ENKESSSSSS DEDEGEDEAS ESETEKEAD- ---------- BACU009787/1-960 ETPKPQETED ENKESSSSSS DEDEGADEAS ESETEKEAGD AETLCPQSTA 401 450 ENSBTAP00000055124/1-891 ---------- ---------- ---------- ----QSAGGR HVRPNSDNRS bmy_09437T0/1-667 ---------- ---------- ---------- ----KKLGAI VNHSDSESKS ENSTTRP00000010657/1-976 ---------- ---------- ---------- ----KKPGAI VNRSNSESKS BACU009787/1-960 GRCLSQGRVS PKPCGPAFKT SHSLAPADLS SVVYKKPGAI VNRSDSESKS 451 500 ENSBTAP00000055124/1-891 SVMERTPAAP QSAVPASSTR RPSSLFSKPE ETRDESPCSW RLGLRKTGSQ bmy_09437T0/1-667 SAAEPTPAPA QSTSSTSSAR RFSGLFNKPE EPRDESPSSW RLGLRKTGSQ ENSTTRP00000010657/1-976 SAAEQTPAPA QIISSTSSAR RFSGLFNKPE EPRDESPSSW RLGLRKTGSQ BACU009787/1-960 SAAEPTPAPA QSTSSTSSAR RFSGLFNKPE EPRDESPSSW RLGLRKTGSQ 501 550 ENSBTAP00000055124/1-891 NVLSEAAGAR EALRDRGASV HRSASSPRIS ALMDNREKER ETRSSLSSLG bmy_09437T0/1-667 NVLSEAARSR EALRDRGASI HRSASSPRIS AVLDNREKER ENRSYFSSLG ENSTTRP00000010657/1-976 NVLGEAARSR EALRDRGASI HRSASSPRIS TVLDTREKER ESRSSFSALG BACU009787/1-960 NVLSETARSR EALRDRGASI HRSASSPRIS AVLDNREKER ENRSYLSSLG 551 600 ENSBTAP00000055124/1-891 LRRPGSTSDL EEKENRESAA NLVRSGSQPR QPWRDAAKGS ETPQTAAPST bmy_09437T0/1-667 PRRLSSASDL EEKENRESAA HLVRSGPPAR QLWRDGAEGS ESLQTAAPST ENSTTRP00000010657/1-976 PRRLSAASDL EEKENRESAA HLVRSGPPAR QLRRDEAEGS ESLQTTAPST BACU009787/1-960 PRRLSSAGDL EEKENRESAA HLVRSGPPAR PLRRDAAEGS ESLQTAAPSS 601 650 ENSBTAP00000055124/1-891 YVSTFLKRTP YRSQADSTAE RA-DGVACSS PLCVITNRPP PSTASGVPAT bmy_09437T0/1-667 YVTTYLKRPP HKSQADSTAE RTVDSVSCGT PLCVITNRAP PSTANGVTAA ENSTTRP00000010657/1-976 YVTTYLKRPP YKSQADSAAE RTVDGVSCGT PLCVITNRPP PSTANGVTAA BACU009787/1-960 HVTAYRKRPP HKSQADSTAE RTVDSVSCGT PLCVITNRAP PGTANGVTAA 651 700 ENSBTAP00000055124/1-891 TLLCAPGPEP SVEARQRRR- ---------- ---------- ---------- bmy_09437T0/1-667 ALLSTPGTDS SVEARERRR- ---------- ---------- ---------- ENSTTRP00000010657/1-976 ALLSTPGTDS SVEARERRR- ---------- ---------- ---------- BACU009787/1-960 ALLSTPGTDS SVEARERRSP RLKPGSSCRC SSVALSLGLV QLTPLHRELR 701 750 ENSBTAP00000055124/1-891 ---------- ---------- -SYLTPVRDE EAESLRKARS RQARQTRRST bmy_09437T0/1-667 ---------- ---------- --YF------ ---------- ---------- ENSTTRP00000010657/1-976 ---------- ---------- -SYLTPVRDE EAESLRKARS RQARQTRRST BACU009787/1-960 EVLLLLGFLH TAEPTTQQGV GSYLTPVRDE EAESLRKARS RQARQTRRST 751 800 ENSBTAP00000055124/1-891 QSAVPLEQLK NGKRVPPCSP CNRSFREKLG PHQAEPWTLR SSTVSAVEPG bmy_09437T0/1-667 --------FC YGSRHFFFLF VLRE------ ---------R SLSGT----- ENSTTRP00000010657/1-976 Q-GVTLTDLQ EAERTFSRSR AERQAQEQPS PKPVGP---R GLNGSAQKHE BACU009787/1-960 Q-GVTLTDLQ EAERTFSRSR AERQAQEQPS LKPVGP---R GLEGSAQKHE 801 850 ENSBTAP00000055124/1-891 RLVVPAGVGG GG--PSRCVL GGGARAGLLH RLSELSDVTK GKSPKGGIAV bmy_09437T0/1-667 ---------- ---------- ---------- --------IS PFCDGAP--- ENSTTRP00000010657/1-976 PLAAPAEEAG ESRQPWDRSL EDQPVYRRLR IPAQPDKPMT PVSPPAPRPS BACU009787/1-960 PLAAPAEEAG ESRQPWDRSL EDQPVYRRLR CPAQPDKPTT PVSPPAPRPS 851 900 ENSBTAP00000055124/1-891 RNISKRLPRA GGRSQKPGGA WAAVPWPSWA VGVWQRQGQG LRLG------ bmy_09437T0/1-667 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010657/1-976 LYTSSYLLRT GRSSAPDSES SEPPASPAGA KEMDKNEGEE ADLGDQSSNR BACU009787/1-960 LYTSSYLLRT GRSSAPDSES SEPPASPAGA KEMDKNEGAE ADLGDESSDR 901 950 ENSBTAP00000055124/1-891 --------VR EAEEAEPGRQ WCPFPPEDMT PRG--PDWLP CLFEFLRRPL bmy_09437T0/1-667 ---------- EQREASLVLL WVVHDDFWQQ RKAVKPDWY- ---------- ENSTTRP00000010657/1-976 LSIRERRRPK ERRRGTGINF WTKDEDETDV SEEVKAAWAG RRLELGGSDA BACU009787/1-960 LCVRERRRPR ERRRATGINF WTKDEDETDV SEEVKAAWQG ---------- 951 1000 ENSBTAP00000055124/1-891 RSGPCICSSP LLCSREQPRP LCNLSSPALG AVVSSIYTYI CDNFKLMIAR bmy_09437T0/1-667 ---------- ---------- ---------- ---------S IGNTLEIVAL ENSTTRP00000010657/1-976 SSERASARAR REAREARLAT LSSRAGEDSS RDYRKLYESA LTENQKLKTK BACU009787/1-960 ---------- ---------- ---------- ---------A TGKAEPLTVR 1001 1050 ENSBTAP00000055124/1-891 NLKKDFNNPA FFIMAPPRLL FLTSYLTSFH QQKQDKVPDR SSALETEKRE bmy_09437T0/1-667 ERGGQ----E ---------- -PHGVVSVCA VLRNVNFRSQ SCGL------ ENSTTRP00000010657/1-976 LQEAQLELAD ---------- -VKSKLXXXX XQKQDKTADR SSVLEMEKRE BACU009787/1-960 LGEGQ----E ---------- -LGSAPSFSA SGPQQRIALR TC-------- 1051 1100 ENSBTAP00000055124/1-891 RRALERKMSE MEEEMKNLHQ LKQIQTLKHM NEQLQAENRA LTRVVARLSE bmy_09437T0/1-667 ------ECFQ PGNGLIK--- ---------- ---------- ---------- ENSTTRP00000010657/1-976 RRALERKMSE MEEEMKNLHQ LKQIQTLKQM NEQLQAENRA LTRVVARLSE BACU009787/1-960 ------PCGV FRGPLKN--- ---------- ---------- ---------- 1101 1150 ENSBTAP00000055124/1-891 AVEGSDPQGL bmy_09437T0/1-667 ---------- ENSTTRP00000010657/1-976 AIEGSDPQGL BACU009787/1-960 -----APAA-