KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:48 2014 Check: 00 .. Name: ENSP00000399863/1-927 Len: 997 Check: 841 Weight: 1.00 Name: ENSBTAP00000055133/1-564 Len: 997 Check: 9796 Weight: 1.00 Name: ENSTTRP00000015225/1-821 Len: 997 Check: 7214 Weight: 1.00 Name: bmy_05879T0/1-806 Len: 997 Check: 7021 Weight: 1.00 Name: BACU006289/1-616 Len: 997 Check: 2834 Weight: 1.00 // 1 50 ENSP00000399863/1-927 MADAEPEAGG GSEDGGGGGG PAPPGQSGSV ARVAPLGPEQ LRQVLEQVTK ENSBTAP00000055133/1-564 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015225/1-821 ---------- ---------- ---------- ---------- ---------- bmy_05879T0/1-806 ---------- ---------- ---------- ---------- ---------- BACU006289/1-616 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000399863/1-927 AQPPPPPPPF VLRDAARRLR DAAQQAALQR GRGTEPPRLP RLLPPQQLEA ENSBTAP00000055133/1-564 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015225/1-821 ---------- ---------- ---------- ---------- ------QLEA bmy_05879T0/1-806 ---------- ---------- ---------- ---------- ---------- BACU006289/1-616 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000399863/1-927 ICVKVTSGET KGQERPMLLP TTIQPQTARK SQLPRGNSCL VGLHIASPQL ENSBTAP00000055133/1-564 ---------- ------MPAL ATIQSKLAGP GPPPSGHCSA VGL---SSQL ENSTTRP00000015225/1-821 ICVKVTSGGT KGQEKPMPAL ATIQPKTARP SQPLGRHCSA LGLSVTSSQL bmy_05879T0/1-806 ---------- ------MPAL ATIQPKTARP XQPLGRHCSA LGLSVASSQL BACU006289/1-616 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000399863/1-927 LRVQPLVRTE PQSCFLSDLC QPPAQGFVQR PLPALQVVPA KRVPAPKAPD ENSBTAP00000055133/1-564 L--------G PPPRVLSHHP RPPVRVFIQR PLPALRPVPV KTVSATEPPS ENSTTRP00000015225/1-821 LGAQPLLSTG PQPRFLSHSP QPPVQVFVQR PLLALRPDPA KRVLASEALS bmy_05879T0/1-806 LGPQPLLSPG PQPCFPSHPP QPPVQVFVQR PPLALRPVPA RRVLASEALS BACU006289/1-616 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000399863/1-927 EQGSMLTPLS ASDPLAVTSL SSSSAHPFIS NLHTRHTEKL KKSLKVKTRS ENSBTAP00000055133/1-564 GRSTAAVRLS ASDPPAITSV SSSSANLFIS SSQTKHAEKL KKSLKVKTRS ENSTTRP00000015225/1-821 GQGTTLSPLS ASDPPAGTSV SSSPANLFIS NSQTKCTKKL KKSLKVKTRS bmy_05879T0/1-806 GQGTTPPPLP ASDPPAGTSV SSSPANLFIS SSQTKCTKKL KKSLKVKTRS BACU006289/1-616 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000399863/1-927 GRVSRPPKYK AKDYKFIKTE DLADGHLSDS DDYSELCVEE DEDQRERHAL ENSBTAP00000055133/1-564 GRISRPPKYK AKDYKFIKTE DLADGHPSDS DDYAELSVEE DEDQRGRRAL ENSTTRP00000015225/1-821 GRISRPPKYK AKDYKFIKTE DLAGGHPSDS DDYSELSVEE DEDHSGRQAL bmy_05879T0/1-806 GRISRPPKYK AKDYKFIKTE DLADGHPSDS DDYSELSVEE DEDHRGRQAL BACU006289/1-616 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000399863/1-927 FDLSSCSLRP KSFKCQTCEK SYIGKGGLAR HFKLNPGHGQ LDPEMVLSEK ENSBTAP00000055133/1-564 FDLATCSLRP KTFKCQTCDK SYIGKGGLAR HFKLNPGHGH LEPEMSPSEK ENSTTRP00000015225/1-821 FDLSSCSLRP KTFKCQTCEK SYIGKGGLAR HFKLNPGHGH LEPETLLSKK bmy_05879T0/1-806 FDLSSCSLRP KTFKCQTCEK SYIGKGGLAR HFKLNPGHGH LEPETLLSKK BACU006289/1-616 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000399863/1-927 ASGSTLRGCT EERTLSLTSL GLSMPADPCE GGARSCLVTE SARGGLQNGQ ENSBTAP00000055133/1-564 ANGSVIAGPT EGKTCSLASQ GPPTPALPVE EGAA------ SARRGLQNGQ ENSTTRP00000015225/1-821 ANGSMILGPT EGRTTSLASR ELSTPALLSE EGAR------ SARGGLQNGQ bmy_05879T0/1-806 ANGSVIPGPT ESRTTSLASP ELSTPALLSE EGAR------ SARGGLQNGQ BACU006289/1-616 ----MIPGPT EGRTASLASP ELSTPALLSE EGAR------ SARGGLQNGQ 401 450 ENSP00000399863/1-927 SVDVEETLPS EPENG---AL LRSERYQGPR RRACSETLAE SRTAVLQQRR ENSBTAP00000055133/1-564 SVEVEEALVS EAKNGSFSAL LGSERHPGPR RSSFSMVPAE PSTAVLERSG ENSTTRP00000015225/1-821 SVDAEEALVS EPKNGSFSAL LGSERHPGPR RSGYSVALRE PSAAVLEQSG bmy_05879T0/1-806 SVDVEEALVS EPKNGSFSAL LGSERHPGPR RSGYCVALPE PSAAVLEQSG BACU006289/1-616 SVDVEEALVS EPKNGSFSAL LGSERHPGPR RSGYCVALPE PSTAVLEQSG 451 500 ENSP00000399863/1-927 AAQLPGGPAA AGEQRASPSK ARLKE----- ----FLQ--- ---------- ENSBTAP00000055133/1-564 TAHPPVGAGA ------ARNR ARLQE----- ----LLH--- ---------- ENSTTRP00000015225/1-821 AVGPQVGVGA ACAQGPARSR ARLLE----- ----FLH--- ---------- bmy_05879T0/1-806 AVRPQVGVGA VCAQGPARSR ARLLE----- ----FLH--- ---------- BACU006289/1-616 AVRPQVGVGA VCAQGPARSR ARLLETGVSP ETGIHLHRNW VSVQYRALSW 501 550 ENSP00000399863/1-927 ---------- ---------- QCDREDLVEL ALPQLAQVVT VYEFLLMKVE ENSBTAP00000055133/1-564 ---------- ---------- QCDQDDLVEL ALPRLAQVVT VYEFLLMKVE ENSTTRP00000015225/1-821 ---------- ---------- QCDREDLVEL ALPLLAQVVT VSEFLLMKVE bmy_05879T0/1-806 ---------- ---------- QCDREDLVEL ALPLLAQVVT VSEFLLMKVE BACU006289/1-616 LGGDAVQGER CGQSSQRQHC QCDREDLVEL ALPLLAQVVT VSEFLLMKVE 551 600 ENSP00000399863/1-927 KDHLAKPFFP AIYKEFEELH KMVKKMCQDY LSSSGLCSQE TLEINNDKVA ENSBTAP00000055133/1-564 KGHLAKPLFP SVYKEFEELH KMVTEMCQDY LRSSGPCSQE PLEVNNSKVA ENSTTRP00000015225/1-821 KGHLAKPFFP AVYKEFEELH KMVKKMCQDY LHSSGPCS-- -LEINNSKVA bmy_05879T0/1-806 KGHLAKPFFP AVYKEFEELH KMVKKMCQDY LRSSAPCS-- -LEINNSKVA BACU006289/1-616 KRHLAKPFFP AVYKEFEELH KMVKKMCQDY LRSSAPCS-- -LEINNSKVA 601 650 ENSP00000399863/1-927 ESLGITE-FL RKKEIHPDNL GPKHLSRDMD GEQLEGASSE KREREAAEEG ENSBTAP00000055133/1-564 ESIGITEEFL RKKEVHADCI PCKCTSPEEA PEELEGAGPQ KRANEIAGDG ENSTTRP00000015225/1-821 ESLGITEEFL REKEIHTDCT PPKRSSREDD PEDLEGAGPQ KRENETAEDR bmy_05879T0/1-806 ESLGITEEFL RKKEIHTDCT PPKCTSREED REALEDAGPQ KRENETAEER BACU006289/1-616 ESLGITEEFL RKKEIHTDCT PPKCTSREED REALEDAGPQ KRENETAEER 651 700 ENSP00000399863/1-927 LASVKRPRRE ALSNDTTESL AANSRGREKP RPLHALAA-G FSPPVNVTVS ENSBTAP00000055133/1-564 LASVKRTRRD ECP------- -AEDGGLQRP AECAPAA--G FTPRVSGVAS ENSTTRP00000015225/1-821 LASVKRTRRE TVPQDTTE-Y SADGGGLQRL ASCAPAASAG FAPGVNGGAS bmy_05879T0/1-806 LASVKRTRRE PVPRDTTE-Y SADGGGLQGP ASCAPAASAG FAPGVNGGAS BACU006289/1-616 LASVKRTRRE PVPRDTTE-Y SADGGGLQGP ASCAPAASAG FAPGVNGGAS 701 750 ENSP00000399863/1-927 PRSEESHTTT VSGGNGSVFQ AGPQLQALAN LEARRGSIGA ALSSRDVSGL ENSBTAP00000055133/1-564 PRPEESPSIP APEREGSVAQ VGHRPAALAG WTARGGPADP TALCPDALGQ ENSTTRP00000015225/1-821 HLPEESPTMP VSELDSSTAQ AGQQLKAFAD SAAGSGSADP ALLFREARGL bmy_05879T0/1-806 HPPEESPTMP VSELDSSTAQ AGQQRKAFAD SAAGSGSADP ALLFREARGP BACU006289/1-616 HPPEESPMMP ASELDSSTAQ AGQQLKAFAD SAAGSGSADP ALLFREARGP 751 800 ENSP00000399863/1-927 PVYAQSGEPR RLTQAQVAAF PGENALEHSS DQDTWDSLRS PGFCSPLSSG ENSBTAP00000055133/1-564 G--------- ---------- ---------- ---------- ---------- ENSTTRP00000015225/1-821 GVYTQLGEPG SLAQDQVAAS SGEKAQEHLS GQDAGDGHGS RALC------ bmy_05879T0/1-806 GVYTQLGEPG SLAQDQVAAS SGEKAQEHSS EQDAGDGPES RALC------ BACU006289/1-616 GVYTQLGKPG SLA--QVATS SGEKAQEHSS EQDAGDGPGS RALC------ 801 850 ENSP00000399863/1-927 GGAESLPPGG PGHAEAGHLG KVCDFHLNHQ QPSPTSVLPT EVAAPPLEKI ENSBTAP00000055133/1-564 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015225/1-821 GTSMALLPGR PGNAEAGSLR EVRGSHLSSP RSGPGEVLLL EAAAPPQEKA bmy_05879T0/1-806 GTSMALPPGR PGNAEAGSLR EVC------- --GPSKVLLP EAAAPPQEKA BACU006289/1-616 GTAMALPPGR PGSAEAGSLR EVC------- --SPGEVLLP EAAAPPQEKA 851 900 ENSP00000399863/1-927 LSVDSVAVDC AYRTVPKPGP QPGPHGSLLT EGCLRSLSGD LNRFPCGMEV ENSBTAP00000055133/1-564 ---------- --------SP VP-------- ---------- ---------- ENSTTRP00000015225/1-821 WSVDVMPAGY AYGTTSEPGP QPSQGGLLGP EGGLTGHAGD LDQSPCGTET bmy_05879T0/1-806 WSVDVMPAGY AYGTTSKPGP QPSWGRLLGP EGGLTGHAGD LDQSPCGTET BACU006289/1-616 WSVDVMPAGY AYGTTSEPGP QPSRGGLRGP EGGLTGHAGD LDQSPCGTET 901 950 ENSP00000399863/1-927 HSGQRELESV VAVGEAMAFE ISNGSHELLS QGQKQIFIQT SDGLILSPPG ENSBTAP00000055133/1-564 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015225/1-821 HADRRELEGI TAVREAMAFE NASGGPTLPS QRQEQIFIQT SDGHTLSHPG bmy_05879T0/1-806 HADRRELEGI SAVREAMAFE NASGGPTLLS QRQEQIFIQT SDGRILSHPG BACU006289/1-616 PADRRELEGI TAVREAMAFE NASGGPTLLS QRQEQIFIQT SDGRILSHPG 951 1000 ENSP00000399863/1-927 TIVSQEEDIV TVTDAEGRAC GWAR------ ---------- ------- ENSBTAP00000055133/1-564 ---------- ---------- ---------- ---------- ------- ENSTTRP00000015225/1-821 SIVSGEGDIV IVTDTEGPAC SRAPR----- ---------- ------- bmy_05879T0/1-806 SVVSGEGDIV IVTDTEGPAL QAGPPEGVPL ETVETEPSQ- ------- BACU006289/1-616 SVVSGEGDVV MVTDTEGPAL QAGPPEGVPV EAVETEPLRE PEPELQS