KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:25:57 2014 Check: 00 .. Name: ENSP00000410852/1-1108 Len: 1108 Check: 8255 Weight: 1.00 Name: bmy_19026T0/1-613 Len: 1108 Check: 279 Weight: 1.00 Name: ENSBTAP00000055174/1-1093 Len: 1108 Check: 6644 Weight: 1.00 Name: ENSTTRP00000004842/1-710 Len: 1108 Check: 8604 Weight: 1.00 Name: BACU013678/1-710 Len: 1108 Check: 8528 Weight: 1.00 // 1 50 ENSP00000410852/1-1108 MRSEGAAPGP AAPLCGALSL LLGALLGKVI EGHGVTDNIQ RFSSLPPYLP bmy_19026T0/1-613 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055174/1-1093 --------LR SPEITPSLSF SFFSFPSAVI EGRGLTDNIQ RFSSLPPYLP ENSTTRP00000004842/1-710 ---------- ---------- ---------- ---------- ---------- BACU013678/1-710 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000410852/1-1108 VSYHILRAET SFFLKEANQD LLRNSSLQAR VESFFTYKTR QPPVLNASYG bmy_19026T0/1-613 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055174/1-1093 VTYQVLRAET SFFLKETNQD LTRNSSLQSR VESFFLYKAR QPPILNASYG ENSTTRP00000004842/1-710 ---------- ---------- ---------- ---------- ---------- BACU013678/1-710 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000410852/1-1108 PFSVEKVVPL DLMLTSNFLG PTNKFSFDWK LKAHILRDKV YLSRPKVQVL bmy_19026T0/1-613 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055174/1-1093 PFSVQKVVPL ELMSTSNFLG PTDKVSFNWK LKAHILRDKI YLSRPRVQVL ENSTTRP00000004842/1-710 ---------- ---------- ---------- ---------- ---------- BACU013678/1-710 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000410852/1-1108 FHIMGRDWDD HGAGEKLPCL RVFAFRETRE VRGSCRLKGD LGLCVAELEL bmy_19026T0/1-613 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055174/1-1093 FHLVGRDWDD PSPAQSLPCL RVFAFRETRE VRGSCRLRGA LGLCVAQLEL ENSTTRP00000004842/1-710 ---------- ---------- ---------- ---------- ---------- BACU013678/1-710 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000410852/1-1108 LSSWFSAPTV GAGRKKSMDQ PEGTPVELYY TVHPGNERGD CAGGDFRKGN bmy_19026T0/1-613 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055174/1-1093 PASWFGTPTV VAGRKKAPEP PEGSPVELYY AVQPGDERGD CSGGDVRKGN ENSTTRP00000004842/1-710 ---------- ---------- ---------- ---------- ---------- BACU013678/1-710 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000410852/1-1108 AIRPGKDGLE ETTSHLQRIG TVGLYRAQDS AQLSELRLDG NVVIWLPSRP bmy_19026T0/1-613 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055174/1-1093 AIRPGKDGLQ ESTSHLQRIS AVGLYRAQDS AQLSELRLDG NVAIWLPSRP ENSTTRP00000004842/1-710 ---------- ---------- ---------- ---------- ---------- BACU013678/1-710 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000410852/1-1108 VKQGEVVTAY VTISSNSSVD LFILRAKVKK GVNILSAQTR EPRQWGVKQE bmy_19026T0/1-613 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055174/1-1093 VKQGDVVTAY VTVASNSTVD FFILRAKVKK GVNILSTRTS EPRQWDVKQE ENSTTRP00000004842/1-710 ---------- ---------- ---------- ---------- ---------- BACU013678/1-710 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000410852/1-1108 VGSGGKHVTA TVACQRLGPS PRNRSSSLFN EVVQMNFEIA SFSSLSGTQP bmy_19026T0/1-613 ---------- ---------- ---------- ----MN---- ---------- ENSBTAP00000055174/1-1093 MGNGGKHATT AVVCQRLAPG ARNRSSSLFN EVVQMNFEIA SFSSLSGSQP ENSTTRP00000004842/1-710 ---------- ---------- ---------- ----MNFEIA SFSSLSGSQP BACU013678/1-710 ---------- ---------- ---------- ----MNFEIA SFSSLSGSQP 401 450 ENSP00000410852/1-1108 ITWQVEYPRK GTTDIAVSEI FVSQKDLVGI VPLAMDTEIL NTAVLTGKTV bmy_19026T0/1-613 ---------- ---------- --------GV XPLXLRL--- ---------- ENSBTAP00000055174/1-1093 ITWQVEYPRR GTTDIAVSEI FISQKDLVGI VPLAMDTEIL NTAILTGKTV ENSTTRP00000004842/1-710 ITWQVEYPRR GTTDIAVSEI FISQKDLVGI VPLAMDTEIL NTAILTGKTV BACU013678/1-710 ITWQVEYPRR GTTDIAVSEI FISQKDLVGI VPLAMDTEIL NTAILTGKTV 451 500 ENSP00000410852/1-1108 AMPIKVVSVE ENSAVMDISE SVECKSTDED VIKVSERCDY IFVNGKEIKG bmy_19026T0/1-613 ---------- ---------- ---CQWQRDE --RQGGHGGE LHIPAPE--- ENSBTAP00000055174/1-1093 AMPIKVVTVE ENSIVTDISE SVECKSTDEE VIKVSDHCDY VFVNGKEMKG ENSTTRP00000004842/1-710 AMPIRVVSVE ENSAVTDISE SVECKSTDEE VIKVSDRCDY IFVNGKEMKG BACU013678/1-710 AMPIRVVSVE ETSAVTDISE SVECKSTDEE VIKVSDRCDY VFVNGKEMKG 501 550 ENSP00000410852/1-1108 KMDAVVNFTY QYLSAPLCVT VWVPRLPLQI EVSDTELSQI KGWRVPIVTN bmy_19026T0/1-613 ---------- ---RPPARHR VGAPAAPAD- RLSDTELSQI KGWRVPIVAT ENSBTAP00000055174/1-1093 KVDVVVNFTY QHLSAPLHVT VWVPRLPLQI EVSDTELSQI KGWRVPIVAS ENSTTRP00000004842/1-710 KVDTVVNFTY QHLSAPLHVT VWVPRLPLQI DVSDTELSQI KGWRVPIVAT BACU013678/1-710 KVDTVVNFTY QHLSAPLHVT VWVPRLPLQI DVSDTELSQI KGWRVPIVAT 551 600 ENSP00000410852/1-1108 KRPTRESEDE DEEERRGRGC ALQYQHATVR VLTQFVSEGA GPWGQPNYLL bmy_19026T0/1-613 KRPTRDSEDE DEEERRGRGC ALQYQHATVR VLAQFVSEGA SPWGRPRHLL ENSBTAP00000055174/1-1093 KRPTRDSEDE DEEERRGRGC ALQYQHAMVR VLTQFVSEGA GPWGQPSHLL ENSTTRP00000004842/1-710 KRPTRDSEDE EEDGRRGRGC ALQYQHATVR VLTQFVSEGA SPWGRPSHLL BACU013678/1-710 KRPTRDSEDE DEEERRGRGC ALQYQHATVR VLTQFVSEGA SPWGRPSHLL 601 650 ENSP00000410852/1-1108 SPNWQFDITH LVADFMKLEE PHVATLQDSR VLVGREVGMT TIQVLSPLSD bmy_19026T0/1-613 SPDWQFDITH LVADFMKLEE PHVATLQDSR ILVGREVGMT TIQVLSPLSD ENSBTAP00000055174/1-1093 SPDWQFDITH LVADFMKLEE PHVATLQDSR ILVGREVGMT TIQVLSPLSD ENSTTRP00000004842/1-710 SPDWQFDITH LVADFMKLEE PHVATLQDSR ILVGREVGMT TIQVLSPLSD BACU013678/1-710 SPNWQFDITH LVADFMKLEE PHVASLQDSR ILVGREVGMT TIQVLSPLSD 651 700 ENSP00000410852/1-1108 SILAEKTITV LDDKVSVTDL AIQLVAGLSV ALYPNAENSK AVTAVVTAEE bmy_19026T0/1-613 SILAEKTVTV LDDKVSVTDL AVQFVAGLSV TLHPSTENSK AVTAVATAEE ENSBTAP00000055174/1-1093 SILAEKTVTV LDDKVAVSDL AIQLVAGLSV TLHPSTENSR AITAVATAEE ENSTTRP00000004842/1-710 SILAEKTVTV LDDKVSVTDL AIQFVAGLSV TLHPSTENSK AVTAVATAEE BACU013678/1-710 SILAEKTVTV LDDKVSVTDL AVQFVAGLSV TLHPSTEDSE AVTAVTTAEE 701 750 ENSP00000410852/1-1108 VLRTPKQEAV FSTWLQFSDG SVTPLDIYDT KDFSLAATSQ DEAVVSVPQP bmy_19026T0/1-613 LLRTPKQEAV LSTWLQFSDG SVTPLDIYDT KDFTLTATSL DEAVVSVPQP ENSBTAP00000055174/1-1093 LLRAPKQEAV VSTWLQFSDG SVTPLDIYDT KDFTLTATSL DEAIVSVPQP ENSTTRP00000004842/1-710 LLRTPKQEAV LSTWLQFSDG SVTPLDIYDT KDFTLTATSL DEAVVSVPQP BACU013678/1-710 LLRTPKQEAV LSTWLQFSDG SVTPLDIYDT KDFTLTATSL DEAVVSVPQP 751 800 ENSP00000410852/1-1108 RSPRWPVVVA EGEGQGPLIR VDMTIAEACQ KSKRKSILAV GVGNVRVKFG bmy_19026T0/1-613 RSPGRPIVTA EGEGQGPLVR VDLTIAEACQ KSKRKSVLAV GVGTVRVKFG ENSBTAP00000055174/1-1093 RSPRWPTVMA EGEGQGPLVR VDLTIAEACQ KSKRKSVLAV GVGSVRVKFG ENSTTRP00000004842/1-710 RSPRWPVVMA EGEGQGPLVR VDLTIAEACQ KSKRKSVLAV GVGTVRVKFG BACU013678/1-710 HSPGRPVVTA EGEGQGPLVR VDLTIAEACQ KSKRKSVLAV GVGIVRVKFG 801 850 ENSP00000410852/1-1108 QNDADSSPGG DYEEDEIKNH ASDRRQKGQH HERTGQDGHL YGSSPVEREE bmy_19026T0/1-613 QNDADSSPGG DHGEAEMKNH ASDRRHK--- ----GQEGHW YGSSSAEREE ENSBTAP00000055174/1-1093 QNDANSSPGV DYEEGEIKNH ASDRRQK--- ----AQEGPF YGSSSAEREE ENSTTRP00000004842/1-710 QNDADSSPGG AYEEAEMKNH ASGRRQK--- ----GQEGPW YGSSSAERDD BACU013678/1-710 QNDADSSPGG DHGEAEMKNH ASDRRHK--- ----GQEGHW YGSSSAEREE 851 900 ENSP00000410852/1-1108 GALRRATTTA RSLLDNKVVK NSRADGGRLA GEGQLQNIPI DFTNFPAHVD bmy_19026T0/1-613 GALRRGSPTA KSLLDNKVGK NSRLDGGRLA GEGQLQTIPI DFANFPAQVD ENSBTAP00000055174/1-1093 GVLRRGNPTA KSLLDNKVGK NSRLDGGRLA GEGQLQTIPI DFANFPAQVD ENSTTRP00000004842/1-710 GAPRRGSPTA KSLLDNKVGK NSRLDGARLA GEGQLQTIPI DFANFPAQVD BACU013678/1-710 GALRRASPTA KSLLDNKVGK NSRLDGGRLA GEGQLQTIPI DFANFPAQVA 901 950 ENSP00000410852/1-1108 LPKAGSGLEE NDLVQTPRGL SDLEIGMYAL LGVFCLAILV FLINCATFAL bmy_19026T0/1-613 LPQAGDGPGP GDLVQTPRGL SDLEIGMYAL LGVFCLAILV FLINCATFAL ENSBTAP00000055174/1-1093 LPQAGSGRGA SDLVQTPRGL SDLEIGMYAL LGVFCLAILV FLINCATFAL ENSTTRP00000004842/1-710 LPRAGGGPGA SDLVQAPRGL SDLEIGMYAL LGVFCLAILV FLINCATFAL BACU013678/1-710 LPQAGGGPGP GDLVQTPRGL SDLEIGMYAL LGVFCLAILV FLINCATFAL 951 1000 ENSP00000410852/1-1108 KYRHKQVPLE GQASMTHSHD WVWLGNEAEL LESMGDAPPP QDEHTTIIDR bmy_19026T0/1-613 KYRHKQVPLE GQASVTHSHD WVWLGNEAEL LEDAGDASPR QDEHTTVID- ENSBTAP00000055174/1-1093 KYRHKQVPLE GQASVTHSHD WVWLGNEAEL LENVGDSSPP QDEHTTIIDR ENSTTRP00000004842/1-710 KYRHKQVPLE GQASVTHSHD WVWLGNEAEL LEDVGDGSPR QDEHTTVID- BACU013678/1-710 KYRHKQVPLE GQASVTHSHD WVWLGNEAEL LEDAGDACPR QDERTTVID- 1001 1050 ENSP00000410852/1-1108 GPGACEESNH LLLNGGSHKH VQSQIHRSAD SGGRQGREQK QDPLHSPTSK bmy_19026T0/1-613 ------ESNR LLLNGGSQKH GQSQVPRPAD SGDRQGRGQT HEPLHSPTSK ENSBTAP00000055174/1-1093 GPGGFEESNR LLLNGGSQKQ GQSQIPRPAD SGGKQGRDQK HEPLHSPTSK ENSTTRP00000004842/1-710 ------ESDR LLLNGGSQKH GHSQVPRPAD SGDRQGKDQK LEPLHSPTSK BACU013678/1-710 ------ESNR LLLNGGSQKH GQSQVPRPAD SGDRQGGGQT HEPLHSPTSK 1051 1100 ENSP00000410852/1-1108 RKKVKFTTFT TIPPDDSCPT VNSIVSSNDE DIKWVCQDVA VGAPKELRNY bmy_19026T0/1-613 RKKVKFTTFT TIPADDSCPT VNSILGGTDE DIKWVCQDVG VGAPRELRDC ENSBTAP00000055174/1-1093 RKKVKFTTFT TIPADDGCPT VNSILGGTEE DIKWVCQDVG VGAPKELRDY ENSTTRP00000004842/1-710 RKKVKFTTFT TIPADDSCPT VNSILGGTDE DIQWVRQDVG VGAPKELREH BACU013678/1-710 RKKVKFTTFT TIPADDSCPT VNSILGGTDE DIKWVRQDVG VGAPRELRDC 1101 1150 ENSP00000410852/1-1108 LEKLKDKA bmy_19026T0/1-613 LEKFKDKA ENSBTAP00000055174/1-1093 LEKFKDNV ENSTTRP00000004842/1-710 LEKFKDKA BACU013678/1-710 LEKFKDKA