KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:05 2014 Check: 00 .. Name: ENSP00000356214/1-235 Len: 240 Check: 5708 Weight: 1.00 Name: ENSBTAP00000055181/1-229 Len: 240 Check: 3345 Weight: 1.00 Name: ENSTTRP00000002828/1-230 Len: 240 Check: 1859 Weight: 1.00 Name: bmy_12940T0/1-166 Len: 240 Check: 8450 Weight: 1.00 Name: BACU018696/1-235 Len: 240 Check: 4455 Weight: 1.00 // 1 50 ENSP00000356214/1-235 MRTQVYEGLC KNYFSLA--- -VLQRDRIKL LFFDILVFLS VFLLFLLFLV ENSBTAP00000055181/1-229 MQTQVYERLC ENYFSPA--- -ELQRHRFKV LL-DTL---- AFLL-LLFFV ENSTTRP00000002828/1-230 MQTQVYEGLC ENYFSLA--- -EPQRHKIKV LLLDIL---- AFLL-ALLPV bmy_12940T0/1-166 ---------- ---------- ---------- ---------- ---------- BACU018696/1-235 MQTQVYEGLC ENYFSPAXXX XEPQRHKIKM LLLDIL---- VFLLALLFLV 51 100 ENSP00000356214/1-235 DIMANNTTSL GSPWPENFWE DLIMSFTVSM AIGLVLGGFI WAVFICLSRR ENSBTAP00000055181/1-229 DIMANNTTSL GSPWPENFWE DVIMSFTVSV ATVLVIGGFI WALSVCLS-R ENSTTRP00000002828/1-230 DIMANNTTSL GSPWPENFWE GVIMSFTVSM ATVLVIGGFI WALFVCFS-R bmy_12940T0/1-166 ---------- ---------- ---MSFTVSM ATVLVIGGFI WALFVCLS-R BACU018696/1-235 DIMANNTTSL GSPWPENFWE GVIMSFTVSM ATVLVIGGFI WALFVCLS-R 101 150 ENSP00000356214/1-235 RRASAPISQW SSSRRSRSSY THGLNRTGFY RHSGCERRSN LSLASLTFQR ENSBTAP00000055181/1-229 RRASAPISQW SSSRRSRSSY THGLNRNGFY RHSGCERRSN LSLASLTFQR ENSTTRP00000002828/1-230 KRASAPISQW SSSRRSRSSY THGLNRTGFY RHSGCERRSN LSLASLTFQR bmy_12940T0/1-166 RRASAPISQW SSSRRSRSSY THGLNRTGFY RHSGCERRSN LSLASLTFQR BACU018696/1-235 RRASAPISQW SSSRRSRSSY THGLNRTGFY RHSGCERRSN LSLASLTFQR 151 200 ENSP00000356214/1-235 QASLEQANSF PRKSSFRAST FHPFLQCPPL PVETESQLVT LPSSNISPTI ENSBTAP00000055181/1-229 QASLEQANSF PRKSSFRGST FHPFLQCPPL PVETESQLVT FPSSTTSSSI ENSTTRP00000002828/1-230 QTSLEQANSF PRKSSFRGST FHPFLQSPPL PVETESHMVT FPSSNTSSTI bmy_12940T0/1-166 QASLEQANSF PRKSSFRGST FHPFLQSPPL PVETESQLVT FPSSNTSSTI BACU018696/1-235 QASLEQANSF PRKSSFRGST FHPFLQSPPL PVETESQLVT FPSSNTSSTI 201 250 ENSP00000356214/1-235 STSHSLSRPD Y-WSSNSLRV GLSTPPPPAY ESIIKAFPDS ENSBTAP00000055181/1-229 NTSHSLGRPD FHWSSNSLRL GVSTPPPPAY ESIIKAFSDS ENSTTRP00000002828/1-230 NTSHSLGRPD FHWSNHSLRI GLSTPAPPAY ESIIKAFPDS bmy_12940T0/1-166 NTSHSLGRPD FHWSNHSLRI GLSTPAPPAY ESIIKAFPDS BACU018696/1-235 NTSHSLGRPD FHWSNHSLRI GLSTPAPPAY ESIIKAFPDS