KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:06 2014 Check: 00 .. Name: ENSP00000360381/1-449 Len: 581 Check: 2441 Weight: 1.00 Name: ENSTTRP00000012625/1-434 Len: 581 Check: 5169 Weight: 1.00 Name: ENSBTAP00000055186/1-514 Len: 581 Check: 7743 Weight: 1.00 Name: bmy_14860T0/1-545 Len: 581 Check: 4078 Weight: 1.00 Name: BACU000243/1-575 Len: 581 Check: 850 Weight: 1.00 // 1 50 ENSP00000360381/1-449 MLAEWGACLL LAVALLGPGL QAQAMEGVKC GGVLSAPSGN FSSPNFPRLY ENSTTRP00000012625/1-434 MLAELEFCLL LAVTLLSPVP RAQAMEGVKC GGVLSAPSGN FSSPNFPRLY ENSBTAP00000055186/1-514 ---------- ---------- ------GVKC GGVLSAPSGN FSSPNFPSLY bmy_14860T0/1-545 MLAELEFCLL LAVTLLGPAP RAQAMKGVKC GGVLSAPSGN FSSPNFPRLY BACU000243/1-575 MLAELEFCVL LAVTLLGPVP RAQAMKGVKC GGVLSAPSGN FSSPNFPRLY 51 100 ENSP00000360381/1-449 PYNTECSWLI VVAEGSSVLL TFHAFDLEYH DTCSFDFLEI YNGASPDKGN ENSTTRP00000012625/1-434 PYNTECIWLI VVAEGSSVLL TFHAFDLEYH DTCSFDFLEI YNGASGDQGN ENSBTAP00000055186/1-514 PYNTECSWLI VVAEGSSVLL TFHAFDLEYH DTCGFDFLEI YNGASGDQGN bmy_14860T0/1-545 PYNTECSWLI VVAEGSSVLL TFHTFDLEYH DTCSFDFLEI YNGASGDQGN BACU000243/1-575 PYNTECSWLI VVAEGSSVLL TFHAFDLEYH DTCSFDFLEI YNGASGDQGN 101 150 ENSP00000360381/1-449 LLGRFCGKVP PPPFTSSWHV MSVIFHSDKH VASHGFSAGY QK-------- ENSTTRP00000012625/1-434 LLGRFCGQVP PPPFASSWNV MSVVFHSDKH VASRGFSAGY QK-------- ENSBTAP00000055186/1-514 LLGRFCGRVP PPPFTSSWHV MSVVFHSDKH VASRGFSAAY QK-------- bmy_14860T0/1-545 LLGRFCGQVP PPPFASSWHV MSVVFHSDKH VASRGFSAGY QKGKGDL--- BACU000243/1-575 LLGRFCGQVP PPPFASSWHV MSVVFHSDKH VASRGFSAGY QKGKGDLAVE 151 200 ENSP00000360381/1-449 ---------- ---------- -------DVC GGVLTGLSGV LTSPEYPNNY ENSTTRP00000012625/1-434 ---------- ---------- -------DVC GGVLTGLSGV LTSPEHPNNY ENSBTAP00000055186/1-514 ---------- ---------- -------DVC GGVLTGLSGV LASPEYPNNY bmy_14860T0/1-545 ---------- ---------- -------AVE RVALGGDGGR AAGPEHPNNY BACU000243/1-575 RVALSGDEGR AAGFLICSGD LIMFLVSDAC GGVLTGLSGV LTSPEHPNNY 201 250 ENSP00000360381/1-449 PNSMECHWVI RAAGPAHVKL VFVDFQVEGN EECTYDYVAV LGGPGPTRGH ENSTTRP00000012625/1-434 PNNVECRWVI RASGPATVKL VFVDFQVEGS EQCTYDYVAV LGGPGPAHGH ENSBTAP00000055186/1-514 PNNVECRWVI RAAGPATIKL VFVDFQVEGS EQCTYDYVAV LGGPGPAREH bmy_14860T0/1-545 PNNVECRWVI RAAGPATVKL VFVDFQVEGS EQCTYDYVAV LGGPGPARGH BACU000243/1-575 PNNVECRWVI RAAGPATVKL VFVDFQVEGS EQCTYDYVAV LGGPGPARGH 251 300 ENSP00000360381/1-449 HYCGSTRPPT LVSLGHELQV VFKSDFNIGG RGFKAYYFSG ECQEVYMAMR ENSTTRP00000012625/1-434 HYCGSSRPPT LVSLGHELQV VFKSDFNIGG RGFKAYYFSG ECQEVYTAVR ENSBTAP00000055186/1-514 HYCGSARPPT LVSLGHELQV VFKSDFNIGG RGFKAYYFSG ECQEVYTAVR bmy_14860T0/1-545 HYCGSSRPPT LVSLGHELQV VFKSDFNIGG RGFKAYYFSG ECQEVYTAVR BACU000243/1-575 HYCGSSRPPT LVSLGHELQV VFKSDFNIGG RGFKAYYFSG ECQEVYTAVR 301 350 ENSP00000360381/1-449 GNFSSPQYPS SYPNNIRCHW TIRLPPGYQV KVFFLDLDLE EPNSLTKTCD ENSTTRP00000012625/1-434 GNFSSPQYPS SYPNHIRCHW TIRLPLGYRV KVFFLDLELE GPNSLTKTCD ENSBTAP00000055186/1-514 GNFSSPQYPS SYPNNIRCHW TIRLPPGYRV KVFFLDLELE EPNSLTRTCD bmy_14860T0/1-545 GNFSSPQYPS SYPNHIRCHW TIRLPLGYRV KVFFLDLELE GPNSLTRTCD BACU000243/1-575 GNFSSPQYPS SYPNHIRCHW TIRLPLGYRV KVFFLDLELE GPNSLTRTCD 351 400 ENSP00000360381/1-449 FDHLAAFDGA SEEAPLLGNW CGHHLPPPVT SSHNQLLLLL HTDRSTTRRG ENSTTRP00000012625/1-434 FDHLAAFDGA SEEAPLLGSW CGHHLPPPVT SSHNQLLLLL HTDRSTTRRG ENSBTAP00000055186/1-514 FDHLAAFDGA SEEAPLLGTW CGHHLPPPVT SSHNQLLIVL HTDRSTTHRG bmy_14860T0/1-545 FDHLTAFDGA SEEAPLLGSW CGHHLPPPVT SSHNQLLLLL HTDRSTTHRG BACU000243/1-575 FDHLTAFDGA SEEAPLLGSW CGHHLPPPVT SSHNQLLLLL HTDRSTTHRG 401 450 ENSP00000360381/1-449 FSVAYIG--- ---------- ---------- ---------- ------GQLG ENSTTRP00000012625/1-434 FSVAYIG--- ---------- ---------- ---------- ------GQLG ENSBTAP00000055186/1-514 FSVAYIGVVP MNVSCTRTDF QILISAQALA PLERTKVYLG SRSCAAQEMG bmy_14860T0/1-545 FSVAYIGVVP MNVSCSRTDF QILISAQALA PLERTKVYLG SRSCAAQEVG BACU000243/1-575 FSVAYIGVVP MNVSCSRTDF QILISAQALA PLERTKVYLG SRSCAAQEVG 451 500 ENSP00000360381/1-449 ---------- -CGSGS---- ---------- ---TEGEGEA LQPQSLQSPS ENSTTRP00000012625/1-434 G--------- -YG------- ---------- ---PAGGEG- ----EAGVPS ENSBTAP00000055186/1-514 SNFRIQARFD TCGTESQRRN NTSVIVSVLY IDFSAGGQED THEYEVRCEP bmy_14860T0/1-545 SNFRIQARFD TCGTESQRRN NTSVIVSVLY IDFSAGGQED IHEYEVRCEP BACU000243/1-575 SNFRIQARFD TCGTESQRRN NTSVIVSVLY IDFSAGGQED IHEYEVRCEP 501 550 ENSP00000360381/1-449 SIPPVCPAPP MNGLLQLLLH WLHPC----- ---------- --PLSGPLRL ENSTTRP00000012625/1-434 LQPP-SSISP LLG------- WLHHC----- ---------- --GLPGPLRL ENSBTAP00000055186/1-514 RRKE-ASAHL LSG-----SH WLGPYAATAE HLQEAPPRDE VEALEGPVAM bmy_14860T0/1-545 RRKE-ASVHL LSG-----SH WLGPYAATAE HLQEAPPRDE AEALEGPVAV BACU000243/1-575 RRKE-ASVHL LSG-----SH WLGPYAATAE HLQEAPPRDE AEALEGPVAV 551 600 ENSP00000360381/1-449 ---DGTAPAC FHYC------ ----RASFPS F ENSTTRP00000012625/1-434 ---YNVALAY FHYY------ ----SAYFSS F ENSBTAP00000055186/1-514 VAQDTSDIVF LGLCILAGVL MVIAIVVLML L bmy_14860T0/1-545 VAQDTSDIVF LGLCILAGVL MVIAIVVLML L BACU000243/1-575 VAQDTSDIVF LGLCILAGVL MVIAIVVLML L