KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:26:08 2014 Check: 00 .. Name: bmy_22398T0/1-1175 Len: 1241 Check: 2604 Weight: 1.00 Name: ENSTTRP00000009295/1-1175 Len: 1241 Check: 6998 Weight: 1.00 Name: ENSP00000447879/1-979 Len: 1241 Check: 4242 Weight: 1.00 Name: ENSBTAP00000055210/1-980 Len: 1241 Check: 3188 Weight: 1.00 // 1 50 bmy_22398T0/1-1175 MENHQETRPE GDGDFVSDKI NFKIEEEDDD QIPNHSLERM DFRNEQEDGK ENSTTRP00000009295/1-1175 MENHQETRPE AGRDFVSDQI HFKIEEEDDD HIADHSLERM DFRNEQENRK ENSP00000447879/1-979 ---------- ---------- ---------M SVCTLSVPVS SLSPGRRCNT ENSBTAP00000055210/1-980 ---------- ---------- ---------M SVCTLSVPVS SLSPGRRCST 51 100 bmy_22398T0/1-1175 RADSGDERAE GREASGGCRP PGRRVSPDPE DDYGALLSQY SSTLYSVAME ENSTTRP00000009295/1-1175 RAGSGDERAE GREASCGCQP PGRRVSPDPE DDYGALLSQY NSTLYSVAME ENSP00000447879/1-979 FSDSG----- ----ILGCVP ----INSNTD E--------- ---------E ENSBTAP00000055210/1-980 FSGAG----- ----ILGCVP ----VTSNTD E--------- ---------E 101 150 bmy_22398T0/1-1175 AVTQSLLSGR GISSRKKSPA WKHFFISPRD STKAICTYCM KEFSRGKNEK ENSTTRP00000009295/1-1175 AVTQSLLSGR GISSRKKSPA WKHFFISPRD STKAICTYCM KEFSRGKNEK ENSP00000447879/1-979 DVVEEKMVAE GVNKEAKQPA ---------- ---------- ----KKKRKK ENSBTAP00000055210/1-980 DVVEGKMVAE GMDKEAELPT ---------- ---------- ----KKKRKK 151 200 bmy_22398T0/1-1175 DLSTSCLMRH VRRAHPTVLV EENGSAPAPA PLPAPLPRLP PPPTDAGDPG ENSTTRP00000009295/1-1175 DLSTSCLMRH VRRAHPTVLV EENGSAPAPA PLPAPLPQLP PPPTDAGDPG ENSP00000447879/1-979 GLR----IKG KRRRKKLILA K--------- ---------- ---------- ENSBTAP00000055210/1-980 GLR----IKG KRRRKKLILA K--------- ---------- ---------- 201 250 bmy_22398T0/1-1175 TVLSPGKLVP RTASKSPSPH QVTEEPGSVV SSEEAPSDVS VSERYSRDEA ENSTTRP00000009295/1-1175 TVLSPGKLVP RTASKSPSPH QVTEELGSVV SSEEAPSDVS VSERYSRDEA ENSP00000447879/1-979 ---------- ---------- KFSKDLGSGR PVADAPALLA SNDPEQDEES ENSBTAP00000055210/1-980 ---------- ---------- KFSKDLVSGR PVADAPTLLA SSAPEQDEES 251 300 bmy_22398T0/1-1175 LVGPPAQPPS LHCDEPAENG AEKNLPLPRS ASGSRRRSAV WKHFYLSPLD ENSTTRP00000009295/1-1175 LAGPPPQPPS LHCDEPAENG AEKNLPLPRS ASGSRRRSAV WKHFYLSPLD ENSP00000447879/1-979 LF-------- -------ESN IEKQIYLPST RA---KTSIV WHFFHVDPQY ENSBTAP00000055210/1-980 LF-------- -------ESN IEKQIYLPST RA---KTSIV WHFFHVDPQY 301 350 bmy_22398T0/1-1175 NSKAVCIHCM NEFSRGKNGK DLGTSCLIRH MWRAHRSIVL RENGGGAGVP ENSTTRP00000009295/1-1175 NSKAVCIHCM NEFSRGKNGK DLGTSCLIRH MWRAHRSIVL RENGGGAGVP ENSP00000447879/1-979 TWRAICNLCE KSVSRGKPGS HLGTSTLQRH LQARHSPHWT RAN--KFGVA ENSBTAP00000055210/1-980 TWRAICNLCE KSVSRGKPGS HLGTSTLQRH LQARHSPHWT RAN--KFGVT 351 400 bmy_22398T0/1-1175 PPYSAPPTLL PTPPLPDGEP SPASSSPGKP VQDSASAPSS PDRLAEDPPA ENSTTRP00000009295/1-1175 PPYSAPPTLL PTPPPPDGEP SPTSSSPGKP VQDSTSAPSS PDRLAEDPPA ENSP00000447879/1-979 SGEEDFTLDV SLSPSS-GSN GSFEYIPTDP LDDNRMGKKH -DKSASDA-- ENSBTAP00000055210/1-980 SGEEDFTLDA PLSPSSAGSS GSFEYIPADP L-DNAMGKKR -DKSVSDA-- 401 450 bmy_22398T0/1-1175 HWSPGDAPVE DAWALSSSSD VGEASWASSP EKQPGDAPSP RPLESGAVFQ ENSTTRP00000009295/1-1175 HWNLGDTQVE DAWALSSSSD VGEASWASSP EKQPGDTPSP RPLESGAVFQ ENSP00000447879/1-979 ------LRAE RGRFLIKSNI VKHALI---- ---PGT---- ---------- ENSBTAP00000055210/1-980 ------LRAQ RGRFLIKSNI VKHALI---- ---PGT---- ---------- 451 500 bmy_22398T0/1-1175 QNKKVMRRLK SEVWHHFSLA PTDSLKAVCR HCGCVISRGK KGD-VGTSCL ENSTTRP00000009295/1-1175 QNKKVMRRLK SEVWHHFSLA PTDSLKAVCR HCGCVISRGK KGD-VGTSCL ENSP00000447879/1-979 ------RAKT SAVWNFFYTD PQHISRAVCN ICKRSVSRGR PGSHLGTSTL ENSBTAP00000055210/1-980 ------RAKT SAVWNFFYTD PQHISRAVCN ICKRSVSRGR PGSHLGTSTL 501 550 bmy_22398T0/1-1175 MRHLYRRHP- --EVVGNQKG FLGASL--AN SPYATLASAE TSSSRLTDLP ENSTTRP00000009295/1-1175 MRHLYRRHP- --EVVGNQKG FLGASL--AN SPYATLASAE TSSSRLTDLP ENSP00000447879/1-979 QRHLQATHPI HWAVANKDSG AVANGLDEAE TERSDLLSDT LHGEKSTGSQ ENSBTAP00000055210/1-980 QRHLQATHPI HWAVANKDSG AVGNGLDEAE TERNDLLSDS LHGERSAGSQ 551 600 bmy_22398T0/1-1175 TMVTKNNQVT FPVNSKKTSK LWNHFSICSA DPTKVACLHC GRTISRGKKP ENSTTRP00000009295/1-1175 TMVTKNNQVM FPVNSKKTSK LWNHFSICSA DPTKVVCLHC GRTISRGKKP ENSP00000447879/1-979 DLTAE----- ---------- ---DLSDSDS DEPM------ ---------- ENSBTAP00000055210/1-980 DVAAE----- ---------- ---HLSDSDS DEPPV----- ---------- 601 650 bmy_22398T0/1-1175 TNLGTSCLLR HLQRFHGGAL KPDAPRTAPP SPPGARGPPS SESAGASSCD ENSTTRP00000009295/1-1175 TNLGTSCLLR HLQRFHGGVL KPDAPRTAPP SPPGARGPLS SESAGASSCD ENSP00000447879/1-979 ---------- ---------L EVEN-RSESP IPVAEQGTLM RAQERETTCC ENSBTAP00000055210/1-980 ---------- ---------L EVENRRSESP TPVAEQDTQM HAQEQETAYC 651 700 bmy_22398T0/1-1175 DVNEKFYDSH PVAKKITSLI AEMIALDLQP YSFVDNVGFN RLLGYLKPQY ENSTTRP00000009295/1-1175 DTSEKFYDSH PVAKKITSLI AEMIALDLQP YSFVDNVGFN RLLGYLKPQY ENSP00000447879/1-979 G--------N PVSSHISQAI IQMIVEDMHP YNYFSTPAFQ RFMQIVAPDY ENSBTAP00000055210/1-980 E--------N STPSQISQAI IQMIVEDMHP YNYFSTPAFQ RFLQIVAPDY 701 750 bmy_22398T0/1-1175 SLPPPSYFSR TAIPGMYDNV KHIIMSHLQE AESGVVHFTS GIWMSSQTRE ENSTTRP00000009295/1-1175 SLPPPSYFSR TAIPGMYDNV KHIIMSHLQE AESGVVHFTS GIWMSSQTRE ENSP00000447879/1-979 RLPSETYFFT KAVPQLYDCV REKIFLTLEN VQSQKIHLTV DIWTHDPSTD ENSBTAP00000055210/1-980 RLPSETFFFT KAVPRLYDSV REKIFLTLEN VQTQKIHLTV DIWTHDPSTD 751 800 bmy_22398T0/1-1175 YLTLTAHWVT FESSA---RP HCEDHHCSAL LDVSQVDCDY SGSSVQKQLE ENSTTRP00000009295/1-1175 YLTLTAHWVT FESSA---RP HREDHHCSAL LDVSQVDCDY SGGSVQKQLE ENSP00000447879/1-979 YFIVTVHWVS LETASFLNNG RIPDFRKWAV LCVTGLAKDC LITNILQELN ENSBTAP00000055210/1-980 YFIVTVHWVS LETTPSFNNG RIPNFRRWAV LCVTGLAKNC LITNILQELN 801 850 bmy_22398T0/1-1175 CWWEAWVTST GLQVGITVTD NPG-VGKALN EGARSSVQCF SHTVNLIVSE ENSTTRP00000009295/1-1175 CWWEAWVTST GLQVGITVTD SPS-IGKALN EGARSSVQCF SHTVSLIVSE ENSP00000447879/1-979 DQIGLWLSPN FLIPSFIVSD NSSNVVHAIK DGGFTHVPCF LHCLNMVIQD ENSBTAP00000055210/1-980 DQIGLWLSPN FLIPSFIVSD SSSNVVHAVK DGGFTHVPCF LRCLNIVIQD 851 900 bmy_22398T0/1-1175 AIKSQRMVQN LLSTARKICE RVHRSPRAKA KLAELQKEYE LPPHHLLQDV ENSTTRP00000009295/1-1175 AIKSQRMVQN LLSTARKICE RVHRSPRAKA KLAELQKEYE LPPHHLLQDV ENSP00000447879/1-979 FFCEHKSIEN MLVAARKTCH HFSHSVKARQ ILQEFQNDHQ LPWKNLKQDE ENSBTAP00000055210/1-980 FFCEHKSIEN MLVAARKTCH HFSHSVKARQ ILQEFQNDHQ LPWKNLKQDE 901 950 bmy_22398T0/1-1175 PSKWNTSFHM LERLIEQKRA VNELSVECNF RELISCDQWE VMQSVCHALK ENSTTRP00000009295/1-1175 PSKWNTSFHM LERLIEQKRA VNELSVECNF RELISCDQWE VMQSVCRALK ENSP00000447879/1-979 TGHWISTFYM LKWLLEHCYS VHH-SLGRAS GVVLTSLQWT LMTYVCDILK ENSBTAP00000055210/1-980 AGHWISTFYM LKWLLEHCYS VHH-SLGRAS GVVLTSLQWT LMTYVCDILK 951 1000 bmy_22398T0/1-1175 PFDAARREMS AHVSTLSQVI PMIHILNRRV EMLFEE--TM GIDTMLK--- ENSTTRP00000009295/1-1175 PFDAARREMS THESTLSQVI PMIHILNRRV EMLFEE--TM GIDTMLK--- ENSP00000447879/1-979 PFEEATQKVS VKTAGLNQVL PLIHHLLLSL QKLREDFQVR GITQALNLVD ENSBTAP00000055210/1-980 PFEEATQKVS VKTIGLNQVL PLIHHLLLSL QKLREDFQVR GITQALNLVD 1001 1050 bmy_22398T0/1-1175 --SLREAMVS RLSATLHDPR YVLATLLDPR YKASL--FSE EEAAQ--YKQ ENSTTRP00000009295/1-1175 --SLREAMVS RLSATLHDPR YVLATLLDPR YKASL--FSE EEAEQ--YKQ ENSP00000447879/1-979 SLSLKLETDT LLSAMLKSKP CILATLLDPC FKNSLEDFFP QGADLETYKQ ENSBTAP00000055210/1-980 SLSLKLETDT LLSAMLKSKP CILATLLDPC FKNSLGDFFP QGADLETYKQ 1051 1100 bmy_22398T0/1-1175 DLIREL-ETL NSTSEPTPVP NGCAPGSPPR DCAGEESLWS LMAKMKKTES ENSTTRP00000009295/1-1175 DLIREL-ETL NSTSEPTPVS NGCDPGSPPR DCAGEESLWS LMAKMKKTEP ENSP00000447879/1-979 FLAEEVCNYM ESSPEICQIP TSEASC--PS VTVGADSFTS SLKEGTSSSG ENSBTAP00000055210/1-980 ILAEEVCNYM ESSPEVSHIA TSEGSG--PS AIVGADSFTS SIREGTSISG 1101 1150 bmy_22398T0/1-1175 RGRTKVPEDM VLA------- --------YL EEEVLEH--G CDPLAYWNLK ENSTTRP00000009295/1-1175 RGRTKVPEDM VLA------- --------YL EEEVLEH--S CDPLAYWNLK ENSP00000447879/1-979 SVDSSAVDNV ALGSKSFMFP SAVAVVDEYF KEKYSEFSGG DDPLIYWQRK ENSBTAP00000055210/1-980 SVDCSAADNV AIGGKSFMFP SAMAVVDEYF KEKYSEISGG DDPLFYWQKK 1151 1200 bmy_22398T0/1-1175 RAAWPGLSAL AVRFLGCPPS IVPSERLFST PTENGSFGQS RLM---MEHF ENSTTRP00000009295/1-1175 RAAWPGLSTL AVRFLGCPPS IVPSERLFST PTENGSFGQS RLT---MEHF ENSP00000447879/1-979 ISIWPALTQV AIQYLSCPMC SWQSECIF-- -TKNSHFHPK QIMSLDFDNI ENSBTAP00000055210/1-980 VNIWPALTQV AIQYLSCPMC SWQSECVF-- -TANSHFHPK QIMSLDFDNI 1201 1250 bmy_22398T0/1-1175 EKLIFLKVNL PLICFQY--- ---------- ---------- - ENSTTRP00000009295/1-1175 EKLIFLKVNL PLICFQY--- ---------- ---------- - ENSP00000447879/1-979 EQLMFLKMNL KNVNYDYSTL VLSWDPEQNE VVQSSEKEIL P ENSBTAP00000055210/1-980 EQLMFLKMNL KNVNYDYSAL VLSWDPE-NE VIQSNEKEIL P