KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:08 2014 Check: 00 .. Name: ENSTTRP00000001137/1-382 Len: 409 Check: 2750 Weight: 1.00 Name: ENSBTAP00000055215/1-383 Len: 409 Check: 2775 Weight: 1.00 Name: ENSP00000333024/1-381 Len: 409 Check: 4034 Weight: 1.00 Name: bmy_11560T0/1-380 Len: 409 Check: 3838 Weight: 1.00 Name: BACU005561/1-348 Len: 409 Check: 5426 Weight: 1.00 // 1 50 ENSTTRP00000001137/1-382 MKPIKAKKKQ H---QRLRKS AKTRRVTQRK PSSGPVCRLC LQEPGDPEKL ENSBTAP00000055215/1-383 MKSIKEKKKE Y---QRLRRS AKTKRVTQRK RSSGPVCRLC LQEPGDPEKL ENSP00000333024/1-381 MKTVKEKKEC ----QRLRKS AKTRRVTQRK PSSGPVCWLC LREPGDPEKL bmy_11560T0/1-380 MPS------- --------RT WGSRKIRGIS SERQPQCALF LS-------- BACU005561/1-348 MPTGSSKTTL YFFHLLYRKS AKTRRVTQRK PSSGPVCRLC LQEPGDPEKL 51 100 ENSTTRP00000001137/1-382 GEFLQKDNLS VHYFCLILSS KVPQRGQSNR GF-GFXXXXX XXXXXXXXXX ENSBTAP00000055215/1-383 GEFLQKDNLS VHYFCLILSS KLPQRGQSNR GFHGFLPEDI RKEAARASRK ENSP00000333024/1-381 GEFLQKDNIS VHYFCLILSS KLPQRGQSNR GFHGFLPEDI KKEAARASRK bmy_11560T0/1-380 CEYKAPFALN ------ILSS KLPQRGQSNR GFHGFLPEDI KKEAARASRK BACU005561/1-348 GEFLQKHNLS VHYFCLILSS KLPQRGQSNR GFHGFLPEDI KKEAARASRK 101 150 ENSTTRP00000001137/1-382 ---------- ---------- --ICFVCKKK GAAINCQKDQ CLRNFHFPCG ENSBTAP00000055215/1-383 ---------- ---------- --ICFVCKRK GAAINCQKDQ CARNFHLPCG ENSP00000333024/1-381 ---------- ---------- --ICFVCKKK GAAINCQKDQ CLRNFHLPCG bmy_11560T0/1-380 NDVPQNVCLF WGPEHCLGSH LQICFVCKKK GAAINCQKDQ CVRNFHLPCG BACU005561/1-348 ---------- ---------- --ICFVCKKK GAAINCQKDQ CVRNFHLPCG 151 200 ENSTTRP00000001137/1-382 QERGCLSQFF GEYKSFCGKH RPTQDIRWEN VGEESCVLCC EDLAQASVGN ENSBTAP00000055215/1-383 LERGCLSQFF GEYKSFCGEH RPTQNIRRRN VGEESCILCC EDLSQISVEN ENSP00000333024/1-381 QERGCLSQFF GEYKSFCDKH RPTQNIQHGH VGEESCILCC EDLSQQSVEN bmy_11560T0/1-380 QERGCLSQFF GEYKSFCEKH RPTQDIRWEN VGEESCVLCC EDLSQASVEN BACU005561/1-348 QERGCLSQFF GEYKSFCEKH RPTQDIRWEN VGEESCVLCC EDLSQASVEN 201 250 ENSTTRP00000001137/1-382 IQSPCCSQTI YHRKCIQKYA HTSAKHFFKC PHCNNREEFP QEMLRMGIHI ENSBTAP00000055215/1-383 IQSPCCSQAI YHRKCIQKYA HTSAKHFFKC PQCNNREEFP QEMLRMGIHI ENSP00000333024/1-381 IQSPCCSQAI YHRKCIQKYA HTSAKHFFKC PQCNNRKEFP QEMLRMGIHI bmy_11560T0/1-380 IQSPCCSQTI YHRKCIQKYA HTSAKHFFKC PHCNNREEFP QEMLRMGIHI BACU005561/1-348 IQSPCCSQTI YHRKCIQKYA HTSAKHFFKC PHCNNREEFP QEMLRMGIHI 251 300 ENSTTRP00000001137/1-382 PDRDAAWELE PGAFSELYER YQHCDAPICV YEQGRDSFED EGRWSLILCA ENSBTAP00000055215/1-383 PDRDAAWELE PGAFSELYQR YQHCDAPICL YERGRDSSEE EGKWRLILCA ENSP00000333024/1-381 PDRDAAWELE PGAFSDLYQR YQHCDAPICL YEQGRDSFED EGRWCLILCA bmy_11560T0/1-380 PDRDAAWELE PGAFSELYQR YQHCDAPICV CEQGRDSFED EGRWRLILCA BACU005561/1-348 PDRDAAWELE PGAFSELYQR YQHCDAPICV YEQGRDSFQD KGRWRLVLCA 301 350 ENSTTRP00000001137/1-382 TCGSHGTHRD CSSLISSCKK WECEECAPAA EATDYTPENS GDIPCCNSTF ENSBTAP00000055215/1-383 TCGSHGTHRN CSSLRSNCKK WECMECAPAA KVIEYTLENS GDIPCCSSTF ENSP00000333024/1-381 TCGSHGTHRD CSSLRSNSKK WECEECSPAA -ATDYIPENS GDIPCCSSTF bmy_11560T0/1-380 TCGSHGTHRD CSSLRSNCKK WECEECAPAA EATDCTPENS GDIPCCSSTF BACU005561/1-348 TCGSHGTHRD CSSLRSNCKK WECEECAPAA EATDCTPENS GDIPCCSSTF 351 400 ENSTTRP00000001137/1-382 HSRGHFCRDT SLEENPGPSS TD-PGSSSLE KPESSGCRTR GHSWRSKGVK ENSBTAP00000055215/1-383 LSRGHFYRDT GLEENPGPSW TNWPGSSLLE NPESSGPR-R SQSWGSKGVT ENSP00000333024/1-381 HPEEHFCRDN TLEENPGLSW TDWPEPSLLE KPESSRGR-R SYSWRSKGVR bmy_11560T0/1-380 HSRGHFCRDT SLEQNPGPSW TDWPGSSSLE KPESSGCRTR AHSWRSKGVK BACU005561/1-348 H-QGAFLQRH QPGTESGPFL D--------- ---------- ---------- 401 450 ENSTTRP00000001137/1-382 ITKSCKKSK ENSBTAP00000055215/1-383 ISKSCKKSE ENSP00000333024/1-381 ITNSCKKSK bmy_11560T0/1-380 ITKSCKKSK BACU005561/1-348 ---------