KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:09 2014 Check: 00 .. Name: BACU007158/1-504 Len: 554 Check: 2953 Weight: 1.00 Name: ENSP00000411514/1-460 Len: 554 Check: 6856 Weight: 1.00 Name: ENSBTAP00000055222/1-501 Len: 554 Check: 2931 Weight: 1.00 Name: bmy_16693T0/1-420 Len: 554 Check: 6781 Weight: 1.00 Name: ENSTTRP00000006274/1-422 Len: 554 Check: 1151 Weight: 1.00 // 1 50 BACU007158/1-504 -MVPPGKKPA GEASNSNKKC KRYFNEHWKE EFTWLDFDYE RKLMFCLECR ENSP00000411514/1-460 MKRPLSPPPP AEKETPISGA AE-------- ---------- -----CLPRP ENSBTAP00000055222/1-501 MKWPLSPSPA GEKEPPVCEA AE-------- ---------- -----CPPRP bmy_16693T0/1-420 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006274/1-422 ---------- ---------- ---------- ---------- ---------- 51 100 BACU007158/1-504 QALVRNKHGK AENAFTVGTD NFQRHALLRH VTSGAHRQAL AVNRGRPTFE ENSP00000411514/1-460 PEPPKPKRER KRPSYTLC-- ----DVCNIQ LNSAAQAQVH CGGRAHQRRL ENSBTAP00000055222/1-501 PEAPKPKRER KRPSYTLC-- ----DVCNIQ LNSAAQAQVH CGGRAHQRRL bmy_16693T0/1-420 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006274/1-422 ---------- ---------- ---------- ---------- ---------- 101 150 BACU007158/1-504 RQAEGGGTFP GLATTPSFRG VKVEANPAKV AVLTTVYCMA KEDVPDDRCS ENSP00000411514/1-460 RQLSLGKSPS GPAGPAS--- ----GAPSPL --------LA SLPLPTRPLQ ENSBTAP00000055222/1-501 RQLSLEKTTP GPAGPAS--- ----GAPSPL --------LA SLALPARPLQ bmy_16693T0/1-420 ---------- --AGPAS--- ----STPSPL --------LA SLPLPARPLQ ENSTTRP00000006274/1-422 ---------- MLLGPAS--- ----STPSPL --------LA SLPLPARPLQ 151 200 BACU007158/1-504 ALLELQRFNL CQALLGMEHG DYYSPRRVRD MQ-MDPVQKA VISHTFGVPS ENSP00000411514/1-460 PPLDFKH--- ---LLAFHFN GAAPLSLFPN FSTMDPVQKA VISHTFGVPS ENSBTAP00000055222/1-501 PPLDFKH--- ---LLTFHFN GATPLSLFPN FSTMDPVQKA VISHTFGVPS bmy_16693T0/1-420 PPLDFKH--- ---LLAFHFN GATPLSLFPN FSTMDPVQKA VISHTFGVPS ENSTTRP00000006274/1-422 PPLDFKH--- ---LLAFHFN GATPLSLFPN FSTMDPVQKA VISHTFGVPS 201 250 BACU007158/1-504 PLKKKLFISC NICHLRFNSA NQAEAHYKGH KHARKLKAVE AAKSKQRPQT ENSP00000411514/1-460 PLKKKLFISC NICHLRFNSA NQAEAHYKGH KHARKLKAVE AAKSKQRPHT ENSBTAP00000055222/1-501 PLKKKLFISC NICHLRFNSA NQAEAHYKGH KHARKLKAVE AAKSKQRPQT bmy_16693T0/1-420 PLKKKLFISC NICHLRFNSA NQAEAHYKGH KHARKLKAVE AAKSKQRPQT ENSTTRP00000006274/1-422 PLKKKLFISC NICHLRFNSA NQAEAHYKGH KHARKLKAVE ATKSKQRSQT 251 300 BACU007158/1-504 LAQDGTLEPP SPTPASGAPE EPQSK----- ---------- ---------- ENSP00000411514/1-460 QAQDGAVVSP IPTLASGAPG EPQSKAVPAA PPLGPPLQPP PTPDPTCREP ENSBTAP00000055222/1-501 LTQDEMLVPP TPTPASGAPE ERHSK-VPAA PPPGPEIQSP RSPEPTPREP bmy_16693T0/1-420 LAQDGTLVSP SPTPASGAPE EPQSKAVPAA PPPGPKLQPP LSPEPTPREP ENSTTRP00000006274/1-422 LAQDGTLVSP SPTPANGAPE EPQSK-VPAA PPPGPKVQPP LSPEPTAREP 301 350 BACU007158/1-504 ---------- ---------- --EPGREAPG SEPAAAAVES GVSGEGRSEK ENSP00000411514/1-460 AHSELLDAAS SSSSSSCPPC SPEPGREAPG PEPAAAAVGS SMSGEGRSEK ENSBTAP00000055222/1-501 VPSDLFDAAS SSSSSSCLPC SPEPGPEAPE PEPAAVAMGS GVSG-GRSEK bmy_16693T0/1-420 AHSDLLDAAS SSSSSSCPPC SPEPGREAPG PEPAAAAVES GVSGEGRSEK ENSTTRP00000006274/1-422 AHSDVLDAAS SSSSSSCPPC SPEPGREAPG PEPAAAAVES GVSGEGRSEK 351 400 BACU007158/1-504 GRLYCPTCKV TVNSASQLQA HNTGAKHRWM VEGQRGAPRR GRGHAVPRGG ENSP00000411514/1-460 GHLYCPTCKV TVNSASQLQA HNTGAKHRWM MEGQRGAPRR SRGRPVSRGG ENSBTAP00000055222/1-501 GRLYCPTCKV TVN-ASQLQA HNTGAKHRWM VEGQRGAPRR GRGRMVPRGG bmy_16693T0/1-420 GRLYCPTCKV TVNSASQLQA HNTGAKHRWM VEGQRGAPRR GRGHAVPRGG ENSTTRP00000006274/1-422 GRLYCPTCKV TVNSASQLQA HNTGAKHRWM VEGQRGAPRR GRGHAVPRGG 401 450 BACU007158/1-504 AGHKAKRVTG VRGGRQGPRP PFHCALCQLQ VNSETQLKQH LSSRRHKDRL ENSP00000411514/1-460 AGHKAKRVTG GRGGRQGPSP AFHCALCQLQ VNSETQLKQH MSSRRHKDRL ENSBTAP00000055222/1-501 AGHKAKRVTG GRGGRQGPSP PFHCALCQLQ VNSETQLKQH LSSRRHKDRL bmy_16693T0/1-420 AGHKAKRVTG VRGGRQGPRP PFHCALCQLQ VNSETQLKQH LSSRRHKDRL ENSTTRP00000006274/1-422 AGHKAKRVTG VRGGRQGPRP PFHCALCQLQ VNSETQLKQH LSSRRHKDRL 451 500 BACU007158/1-504 AGKPPKPSSQ HSKLQKHAAL AVSILKSKLA LQKQLTKTLA ARFLPSPIPA ENSP00000411514/1-460 AGKTPKPSSQ HSKLQKHAAL A-----SKLA LQKQLTKTLA ARFLPSPLPT ENSBTAP00000055222/1-501 AGKPPKPSSQ HSKLQKHAAL AVSLLKSKLA LQKQLTKTLA ARFLPSPLPT bmy_16693T0/1-420 AGKPPKPSSQ HSKLQKHAAL AVSILKSKLA LQKQLTKTLA ARFLPSPIPT ENSTTRP00000006274/1-422 AGKPPKPSSQ HSRLQKHAAL AVSILKSKLA LQKQLTKTLA ARFLPSPIPT 501 550 BACU007158/1-504 AAATICALPG PLALRPAPTA A-TLFPPPIL GPALFRAPAG AVRPATGPIV ENSP00000411514/1-460 AATAICALPG PLALR----- ---------- ---------- ---------- ENSBTAP00000055222/1-501 AAAAICALPG PLALRPAPTA ATTLFPAPIL GPALFRTPAG AVRPATGPIV bmy_16693T0/1-420 AAATICALPG PLALRPAPTA A-TLFPPPIL GPALFRTPAG AVRPATGPIV ENSTTRP00000006274/1-422 AAATICALPG PLALRPAPTA ATTLFPPPIL GPALFRTPAG AVRPATGPIV 551 600 BACU007158/1-504 FAPY ENSP00000411514/1-460 ---- ENSBTAP00000055222/1-501 FAPY bmy_16693T0/1-420 FAPY ENSTTRP00000006274/1-422 FAPY