KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:26:10 2014 Check: 00 .. Name: ENSTTRP00000007004/1-593 Len: 698 Check: 1986 Weight: 1.00 Name: ENSBTAP00000055224/1-679 Len: 698 Check: 7592 Weight: 1.00 Name: bmy_08722T0/1-403 Len: 698 Check: 3040 Weight: 1.00 Name: BACU012334/1-436 Len: 698 Check: 4474 Weight: 1.00 // 1 50 ENSTTRP00000007004/1-593 MEPRVVKPPG QDLMVERLKR RYGVWGGCPV ---------- ---------- ENSBTAP00000055224/1-679 MEPRVVKPPG QDLVVERLKS RYGLAGGCLS EELRQ----- ---------- bmy_08722T0/1-403 MERRVVKPPG QDLMVERLKS RYGVGVGCPA EAFPAVTCMR VGTASVPPQS BACU012334/1-436 ---------- ---------- ---MGGGG-- ---------- ---------- 51 100 ENSTTRP00000007004/1-593 ---------- ---------- ---------E DFGFCSRGDE AGPSLRCYSD ENSBTAP00000055224/1-679 -SGRWASLFQ PGRRRQDVAE RRRRPPRTPE DLDIFCCGDK VGPSLRCFSD bmy_08722T0/1-403 GESEPVSRLK PGRRRPDVAE RRRRPPPTPE DFGFYSRGDE AGPSLRCYSD BACU012334/1-436 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007004/1-593 ERRRGPASPR GALKRGTVRC LDEELDSFQD LKQRETEEEF IGNDHRVSTS ENSBTAP00000055224/1-679 ERRRRPTSPR GVL---TVNC LDDELDSFQD LKEPETEEEF TGNDSRVSTS bmy_08722T0/1-403 ERRRGPASPR GALKRGTVSW QDDELDSFQD LKQRETEEEF IGNDHRVSTS BACU012334/1-436 ---------R G--------- ---------- ---------F LG-------- 151 200 ENSTTRP00000007004/1-593 EINKQSFKQI NKVAE-PTNL ASDSRNWTDC CSDASESPLK RVSSPASRAS ENSBTAP00000055224/1-679 KINRQSFKET DKANAWPANV ASRSKSWADY CSDGSDSPSK HIGWPASRAP bmy_08722T0/1-403 EINKQSFKEX NKVAG-PTNL ASDSRNWTDC CSDASDSPSK RVSSPASRAS BACU012334/1-436 ---------- ---------- ---------- ---------- RTGAP----- 201 250 ENSTTRP00000007004/1-593 NKQGVLPRQV NQIYDELLQI HQKLQCGTAA QQQFAEELQK RERFLAEREE ENSBTAP00000055224/1-679 RKPGLLPRQV SQIYDELLQI HQKLQCETAA QQEFAEELQK RERFLVEREE bmy_08722T0/1-403 NKQGVLPRQV IQIYDELLQI YQKLQCETAA QQEFAEELQK REHFLAEREE BACU012334/1-436 ---------- ---------- ---LQCETAA QQEFAEELQK RERFLAEREE 251 300 ENSTTRP00000007004/1-593 LLFRHESALN KIKGVKEEVI TRFQTLKEQH DAEVERLTEV LKERNKESRR ENSBTAP00000055224/1-679 LLFRHEGALS EVKDVREEVL MRFQIMKEQH DAEVEHLTEV LRERNKESKR bmy_08722T0/1-403 LLFRHESALN KIKGVREEVL TRFQILKEQH DAEVEHLTEV LKERNKESRR BACU012334/1-436 LLFRHESALN KIKGVREEVL TRFQILKEQH DAEVEHLTEV LKERNKESRR 301 350 ENSTTRP00000007004/1-593 LRSSFDALKE LNDSLKKQLN EVSEENRKLE VQAKRVQARL DNLQRKCEFM ENSBTAP00000055224/1-679 LRSSFDALKG LNDSLKKQLN EVSEENRKLE VQAKRVQARL DNLQRKYEFM bmy_08722T0/1-403 LRSSFDALKE LNDSLKKQLN EVSEENRKLE VQAKRVQARL DNLQ------ BACU012334/1-436 LRSSFDALKE LNDSLKKQLN EVSEENRKLE VQAKRVQARL DNLQRKYEFM 351 400 ENSTTRP00000007004/1-593 TIQRLKGNPH AAHEAKSLKQ EKVPVSKPHK XXXXXXXXXX XXXXXXXXXX ENSBTAP00000055224/1-679 TIQRLKGNPQ ATHEAKSLKQ EKVPASKPCK VSLNGQVYEL LTVFMDWISD bmy_08722T0/1-403 ---------- ---------- ---------- VPLNGQVYEL LTVFMDWISD BACU012334/1-436 TIQRLKGNPH AAHEAKSLKQ EKVPVSKPYK VPLNGQVYEL LTVFMDWISD 401 450 ENSTTRP00000007004/1-593 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000055224/1-679 HHLSKLKNEE SGMDGEKPLP TFGSQRSDIQ EKCVKLLPLM TEQLQWLPFV bmy_08722T0/1-403 HHLSKLKHEE SGMDGEKALP TFASQRNDIQ QKCVKV---- ---------- BACU012334/1-436 HHLSKLKHEE SGMDGEKALP TFASQRNDIQ QKCVKLLPVM TEQLQWMPFV 451 500 ENSTTRP00000007004/1-593 XXXXXXXXXX XXXXXXXXXX XXXXHSTMTS TLRRLGEDIF KGVVTKGLQG ENSBTAP00000055224/1-679 NARLHEPFVK FIYWSLRQLD AGTQHSTMTA TLRRLGEDIF RGVVTKGVQD bmy_08722T0/1-403 ---------- ---------- ---------- ---------- ---------- BACU012334/1-436 NAKLHEPFVK FIYWSLRQLD AGTQHSTMTS TLRRLGEDIF KGVVTKGLQD 501 550 ENSTTRP00000007004/1-593 NSFEHSGESK PKTAAFFKSS SLPLRFLSTL IVLKTVTQAD YLAQAFDSLC ENSBTAP00000055224/1-679 VALEHSVESR PRTAAFFKST SLPLRFVSTL IVLKTVTQAD FLAQAFDSLC bmy_08722T0/1-403 ---------- ---------- ---------- ---------- ---------- BACU012334/1-436 NSFEHSVESK PKTAAFFKSS SLPLRFLSTL IVLKTVTQAD LLAQAFDSLC 551 600 ENSTTRP00000007004/1-593 LDLKADEGKS LFLEYQAVPV VLSHLKISSK GLLSCVVDSL LQMTVESRFL ENSBTAP00000055224/1-679 LDLQADEGKS LFLQLQAVPV VLSHLKLSSR GLLPSVMDSL LQMTVESSAL bmy_08722T0/1-403 ---------- ---------- ---------- ---------- ---------- BACU012334/1-436 LDLKADEGKN LFLECQAVPV VLSHLKVSSK GLLSSAIDSL LQMTVESRFL 601 650 ENSTTRP00000007004/1-593 QPFLQVCSCS LFFRTCSVLL RGPKLDLHIL EKLSIILQKL SKI------- ENSBTAP00000055224/1-679 QPFLEACSCS LFFRTCSVLL RAPKLDLHVL EKLSIILQKL SKIKSNKKLF bmy_08722T0/1-403 --------CF LI-------- ---------- ---------- ---------- BACU012334/1-436 QPFLEVCSCS LFFRTCSVLL RGPKLDLHIL EKLSIILQKL SKIK------ 651 700 ENSTTRP00000007004/1-593 ---------- ---------- ---------- ---------- -------- ENSBTAP00000055224/1-679 ELFTIHLMLQ EIQRTTHPEH AFLCINLNST LFNLGLTKCS SLATSTNP bmy_08722T0/1-403 ---------- ---------- ---------- ---------- -------- BACU012334/1-436 ---------- ---------- ---------- ---------- --------