KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:11 2014 Check: 00 .. Name: ENSBTAP00000055248/1-912 Len: 937 Check: 2419 Weight: 1.00 Name: ENSP00000369614/1-925 Len: 937 Check: 4588 Weight: 1.00 Name: ENSTTRP00000009781/1-930 Len: 937 Check: 5742 Weight: 1.00 Name: bmy_01719T0/1-494 Len: 937 Check: 6215 Weight: 1.00 Name: BACU001226/1-902 Len: 937 Check: 7772 Weight: 1.00 // 1 50 ENSBTAP00000055248/1-912 MAASAASPTS PLRAKDLLSE SSEAPGLNQV SSEVTSQLYT SLHLSRQAES ENSP00000369614/1-925 MATSADSPSS PLGAEDLLSD SSEPPGLNQV SSEVTSQLYA SLRLSRQAEA ENSTTRP00000009781/1-930 MATSATSPSS PLRAKDLLSD SSEAPGLNQA SSEVTSQLYT SLHLSRQAES bmy_01719T0/1-494 ---------- ---------- ---------- ---------- ------AYEV BACU001226/1-902 MATSATSPSS PLRAKDLLSD SSEAPGLNQA SSEVTSQLYT SLHLSRQAES 51 100 ENSBTAP00000055248/1-912 TARAQLYLPA ASPPPHEVLD GLAQELSHSL SVGLENNVKK KDGSKHIFEM ENSP00000369614/1-925 TARAQLYLPS TS-PPHEGLD GFAQELSRSL SVGLEKNLKK KDGSKHIFEM ENSTTRP00000009781/1-930 TARAQLFLPA TFPPPHEVLD GLAQELSHSL SVGLENNLKK KDGSKHIFEM bmy_01719T0/1-494 TLVRGFFLST LYPPSSS--- ---------- ---------- ---------- BACU001226/1-902 TARAQLFLPT TFPPPHEVLD GLAQELSHSL SVGLENNLKK KDGSKHIFEM 101 150 ENSBTAP00000055248/1-912 ESVRGQLQSM LQTSRDAAYR DPPIPGADSE RREEDSFDSD STATLLNTRP ENSP00000369614/1-925 ESVRGQLQTM LQTSRDTAYR DPLIPGAGSE RREEDSFDSD STATLLNTRP ENSTTRP00000009781/1-930 ESVRGQLQSM LQTSRDTAYQ ESATPGAGSE RREEDSFDSD STATLLNTRP bmy_01719T0/1-494 ---------- -KPRQNRADN DPAFP----- ---------- ---------- BACU001226/1-902 ESVRGQLQSM LQTSRDSAYR DPATPGAGSE RREEDSFDSD STATLLNTRP 151 200 ENSBTAP00000055248/1-912 LQDLSPSSSA QAFEELFPRY TSLRPGPPLN PPDFQGLRDA LDSEHTRRKH ENSP00000369614/1-925 LQDLSPSSSA QALEELFPRY TSLRPGPPLN PPDFQGLRDA LDSEHTRRKH ENSTTRP00000009781/1-930 LRDLSPSSSA QALEDLFPRY TSLRSGPPLN PPDFQGLRDA LDSEHTRRKH bmy_01719T0/1-494 ---------- ---------Y S--------- ---------- ---------- BACU001226/1-902 LHDLSPSSSA QALEELFPRY TSLRSGPPLN PPDFQGLRDA LDSEHTRRKH 201 250 ENSBTAP00000055248/1-912 TYTHVAGTSL GAYKLLLNCL LMSLALALHD KLVSMWSALQ FNGPTPLSSK ENSP00000369614/1-925 CERHIQSLQT RVLELQQQ-- -LAVAVAADR KKDTMIEQLD KTLARVVEGW ENSTTRP00000009781/1-930 CERHIQSLQT RVLELQQQ-- -LAVAVTADR KKDIMIEQLD KTLARVVEGW bmy_01719T0/1-494 ---------- ---------- ---------- ---------- ---------- BACU001226/1-902 CERHIQSLQT RVLELQQQ-- -LAVAVTADR KKDIMIEQLD KTLARVVEGW 251 300 ENSBTAP00000055248/1-912 RNSTKTRKFS LTNMYYQPAA ATSTLGLLGM SVPACISKHV SCVQEILNLA ENSP00000369614/1-925 NRHEAERTEV LRGLQEEHQA AELTRSKQQE TV-TRLEQSL SEAMEALNRE ENSTTRP00000009781/1-930 NRHEAERTEV LRGLQEERQA AELTRSKQQE TV-TRLEQSL SEAMEAVNRE bmy_01719T0/1-494 ---------- ---------- ---------- ---------- ---------- BACU001226/1-902 NRHEAERTEV LRGLQEERQA AELTRSKQQE TV-TRLEQSL SEAMEALNRE 301 350 ENSBTAP00000055248/1-912 TNSSYPSRSN DQPLLELTQA SILT-SVSFS RCCSRAPSCS RLRASMASER ENSP00000369614/1-925 QESARLQQRE RETLEEERQA LTLRLEAEQQ RCCVLQEERD AARAGQLSEH ENSTTRP00000009781/1-930 QEGARLQQRE RETLEEERQA LTLSLELEQQ RCRALQEERD AARAGQLSEH bmy_01719T0/1-494 ---------- ---------- ---------- ---------- ---------- BACU001226/1-902 QEGARLQQQE RETLEEERQA LTLSLELEQQ RCRALQEERD EARAGQLSER 351 400 ENSBTAP00000055248/1-912 LCSRRVTVFQ VSSAACRSSW SPRSTSVRSA SCRFQPSTTR ARVSGKEGGH ENSP00000369614/1-925 ---RELETLR AALEEERQTW AQQEHQLKEH YQALQEESQA QLEREKEKSQ ENSTTRP00000009781/1-930 ---QQLETLQ VALEEERQTW AQKEHQLKEC YQALQEESQA QLEREKXXXX bmy_01719T0/1-494 ---------- ---------- ---------- ---------- ---------- BACU001226/1-902 ---QQLETLQ VALEEERQTW AQQEHQLKEC YQALQEESQA QLEREK---- 401 450 ENSBTAP00000055248/1-912 IEFQGKWAGD RELG-SQEQN RFEEGESGIP EPEISNAFLY HLRKQARYES ENSP00000369614/1-925 REAQAAWETQ HQLALVQSEV RRLEGELDTA RRERDALQLE MSLVQARYES ENSTTRP00000009781/1-930 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXARFES bmy_01719T0/1-494 ---------- ---------- ---------- ---------- ----QARCES BACU001226/1-902 REAQAAREAQ QQLALVQSEV RRLEGELDTA RRERDALQLE MSLVQARCES 451 500 ENSBTAP00000055248/1-912 QRIQMESELA VQLEQRVTER LAQAQESSLR QAASLRDHHR KQLQELNGQH ENSP00000369614/1-925 QRIQLESELA VQLEQRVTER LAQAQESSLR QAASLREHHR KQLQDLSGQH ENSTTRP00000009781/1-930 QRIQMESELA VQLEQRVTER LAQAQESSLR QAASLREHHR KQLQELNGQH bmy_01719T0/1-494 QRIQMESELA VQLEQRVTER LAQAQESSLR QAASLREHHR KQLQELHGRH BACU001226/1-902 QRIQMESELA VQLEQRVTER LAQAQESSLR QAACLREHHR KQLQELHGQH 501 550 ENSBTAP00000055248/1-912 QQELSTQLAQ FKVEIAEREE RQQQVAQDYE LRLAREQARV RELQSGNQQL ENSP00000369614/1-925 QQELASQLAQ FKVEMAEREE RQQQVAEDYE LRLAREQARV CELQSGNQQL ENSTTRP00000009781/1-930 QQELSTQLAQ FKVEMAEREE RQQQVAQDYE LRLAREQARA RELQSGRQRL bmy_01719T0/1-494 QQELSTQLAQ FKVELAEREE RQQQVAQEYE LRLAREQARV RELQAGSQRL BACU001226/1-902 QQELSAQLAQ FKVEMAEREE RQQQVAQDHE LRLAREQARV RELQAGSQRL 551 600 ENSBTAP00000055248/1-912 EEQRVELVER LQAMLQAHWE EATRLLSTTT LPPHPPVPPA GPSSPGLQEP ENSP00000369614/1-925 EEQRVELVER LQAMLQAHWD EANQLLSTTL PPPNPPAPPA GPSSPGPQEP ENSTTRP00000009781/1-930 QEQRAELLER LQAMLQAHWE EASHLLSTAA LPPSPPVPPA GPSSPGPQEP bmy_01719T0/1-494 EEQRGELVGR LQALLQAHWE EASHLLSTAA LPPSPP---- --------EP BACU001226/1-902 EEQRGELVGR LQALLQAHWE EASRVLSTAA LPPSPPVPPA GPSSPGPQEP 601 650 ENSBTAP00000055248/1-912 DKGERRIWTV PTMAVALKPV LQQSRETREE LPGVPPPVLC SPSPDLSLLL ENSP00000369614/1-925 EKEERRVWTM PPMAVALKPV LQQSREARDE LPGA-PPVLC SSSSDLSLLL ENSTTRP00000009781/1-930 EKGERSIWTV PPVAVAIKPV LQQSREAQEE PPGVLPPVLC SPSPDLSLLL bmy_01719T0/1-494 EKGERSIWTV PPVAVALKPV LQQSREAQEE PPRVLPPVLC SPSPDLSLLL BACU001226/1-902 EKGERSIWTV PPVAVALKPV LQQSREAQEE PPRVLPPVLC SPSPDLSLLL 651 700 ENSBTAP00000055248/1-912 GPTFQSQHSF QPLEPKPDLT SSSVEAFSAV GTFHPDHRAE RPFPEEDPGS ENSP00000369614/1-925 GPSFQSQHSF QPLEPKPDLT SSTAGAFSAL GAFHPDHRAE RPFPEEDPGP ENSTTRP00000009781/1-930 GPTFQSQHSF QPLEPKPDLT SSSAEAFSAA GTFHPDHRAE RPFPEEDPGS bmy_01719T0/1-494 GPTFQSQHSF QPLEPKPDLT SSSAEAFSAA GSFHPDHRAE RPFPEEDPGS BACU001226/1-902 GPTFQSQHSF QPLEPKPDLT SSSAEAFSAA GSFHPDHRAE RPFPEEDPGS 701 750 ENSBTAP00000055248/1-912 EGDGFLKEGL PPPSQLQGLK HFLHQLLETA PQSHENPSVD QLPPKPGPLT ENSP00000369614/1-925 DGEGLLKQGL -PPAQLEGLK NFLHQLLETV PQNNENPSVD LLPPKSGPLT ENSTTRP00000009781/1-930 DGDGFLKQGL PPPSQLQGLK HFLHQLLETA PQSNENPSND LLPPKSGPLT bmy_01719T0/1-494 DGDGFLKQGL PPPSQLQGLK HFLHQLLETA PQSNENPSND LLPPKSGPLT BACU001226/1-902 DGDGFLKQGL PPPSQLQGLK HFLHQLLETA PQSNENPSND LQPPKSGPLT 751 800 ENSBTAP00000055248/1-912 APSWEETPQV PRLPPPVHKT KVPLAMASSL FRVHELPSAP SQSGGPSGGS ENSP00000369614/1-925 VPSWEEAPQV PRIPPPVHKT KVPLAMASSL FRVPEPPSSH SQGSGPSSGS ENSTTRP00000009781/1-930 APSWEEAPQA PRLPPPVHKT KVPLAMASGL FRVHELPSAH SQSGGSSDGC bmy_01719T0/1-494 APSWEEAPQA PRLPPPVHKT KVPLAMASSL FRVHELPSAH SQSSGPSDGS BACU001226/1-902 APSWEEAPQA PRLPPPVHKT KVPLAMASSL FRVHELPSAH SQSSGPSVGS 801 850 ENSBTAP00000055248/1-912 PERGGDGPAS SRQLMEVSQL LRLYQARGWE ALPAEDLLLY LKRLEHGG-- ENSP00000369614/1-925 PERGGDGLTF PRQLMEVSQL LRLYQARGWG ALPAEDLLLY LKRLEHSGYK ENSTTRP00000009781/1-930 PERGGDGLAP SRQLMEVSQL LRQYQARGWG ALPAEDLLLY LKRLEHSGYQ bmy_01719T0/1-494 PERGGDGLAS SRQLMEVSQL LRLYQARGWG ALPAEDLLLY LKRLEHSG-- BACU001226/1-902 PERGGDGLAP SRQLMEVSQL LRLYQARGWG ALPAEDLLLY LKRLEHSG-- 851 900 ENSBTAP00000055248/1-912 ---------- ---------- -GTDSRGENA PRRNTDSRLG EIPRKEVPSQ ENSP00000369614/1-925 PGRKEEGFSG WKLDYG--EW SGTDGRGDNV PRRNTDSRLG EIPRKEIPSQ ENSTTRP00000009781/1-930 PGRRVEGLGG WNLDCGQEEW SVTDSRGDNA PRRNTDSRLG DMPRKEVPSQ bmy_01719T0/1-494 ---------- ---------- --TDSRGDNA PRRNTDSRLG DMPRKEIPSQ BACU001226/1-902 ---------- ---------- --TDSRGDNA PRRNTDSRLG DMPRKEIPSQ 901 950 ENSBTAP00000055248/1-912 ALPRRLAVAP KTDKPPARKK SGHPAPGGVR SRGGIWR ENSP00000369614/1-925 AVPRRLATAP KTEKPPARKK SGHPAPSSMR SRGGVWR ENSTTRP00000009781/1-930 ALPRRLATAP KTERPPARKK SGHPAPGSVR SRGGIWR bmy_01719T0/1-494 ALPRRLATAP KTERPPARKK SGHPAPGSVR SRGGIWR BACU001226/1-902 ALPRRLATAP KTERPPARKK SGHPAPGSVR SRGGIWR