KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:12 2014 Check: 00 .. Name: ENSP00000296129/1-836 Len: 838 Check: 2590 Weight: 1.00 Name: ENSBTAP00000055250/1-836 Len: 838 Check: 6509 Weight: 1.00 Name: ENSTTRP00000006806/1-807 Len: 838 Check: 6837 Weight: 1.00 Name: bmy_18076T0/1-421 Len: 838 Check: 3825 Weight: 1.00 Name: BACU002463/1-807 Len: 838 Check: 3293 Weight: 1.00 // 1 50 ENSP00000296129/1-836 MAGLNCGVSI ALLGVLLLGA ARLPRGAEAF EIALPRESNI TVLIKLGTPT ENSBTAP00000055250/1-836 MASLNCGVAV ALLGILLLGA ARLPRGV-AY EIDLPRGSGI TVLLKPATQA ENSTTRP00000006806/1-807 ---------- ---------- --------TY EIALPHGSNI TVLIKPGAPT bmy_18076T0/1-421 ---------- ---------- ---------- ---------- ---------- BACU002463/1-807 ---------- ---------- --------TY EIALPRGSNI TVLIKPGVPT 51 100 ENSP00000296129/1-836 LLAKPCYIVI SKRHITMLSI KSGERIVFTF SCQSPENHFV IEIQKNIDCM ENSBTAP00000055250/1-836 LPVKLCYI-M SKRWETTLSI KAGEKKVFSF SCQDPHNYFV IEIQKNIDCV ENSTTRP00000006806/1-807 LPANLCQI-I SKRQVTALSI KAGETAVFSF SCRDPENHFV VEIQKNIDCM bmy_18076T0/1-421 ---------- ---------- ---------- ---------- ---------- BACU002463/1-807 LPANVCHI-I SKKWVTSLSI KAGETAVFSF SCRNPENHFV IEIQKNIDCM 101 150 ENSP00000296129/1-836 SGPCPFGEVQ LQPSTSLLPT LNRTFIWDVK AHKSIGLELQ FSIPRLRQIG ENSBTAP00000055250/1-836 SGQCPFGEVY LQPSTSVLPT LNRTFIWDIK ASKNVSLELQ FSLSRLRQIG ENSTTRP00000006806/1-807 SGPCPFGEVH LQPSMSVLPT LNRTFIWDVK ANKNIGLELQ FSLPRLRQIG bmy_18076T0/1-421 ---------- ---------- ---------- ---------- ---------- BACU002463/1-807 SGPCPFGKVH LQPSTSVLPT LNRTFIWDVK ANKNIGLELQ FSLPRLRQIR 151 200 ENSP00000296129/1-836 PGESCPDGVT HSISGRIDA- TVVRIGTFCS NGTVSRIKMQ EGVKMALHLP ENSBTAP00000055250/1-836 LTENCPDGVT HRISGRVDAS TMVRIGTFCG NGTVSRIKMQ EGVNLALDLP ENSTTRP00000006806/1-807 RGESCPDGVT HSISSRVDT- KMVRIGTFCS NGTVSRIKMQ EGVKMALALP bmy_18076T0/1-421 ---------- ---------- ---------- ---------- ---------- BACU002463/1-807 PGESCPDGVT HSISSRIGT- TMVRIGTFCS NGTVSRIKMQ EGVKMALDLP 201 250 ENSP00000296129/1-836 WFHPRNVSGF SIANRSSIKR LCIIESVFEG EGSATLMSAN YPEGFPEDEL ENSBTAP00000055250/1-836 WFHSRNVSGF SIANRSSIKR LCIIESVFEG EGSATLMSAN YPAGFPEDEL ENSTTRP00000006806/1-807 WFHKRKVSGF SITNRSSIKX XXXXXXXXXX XXSATLMSAN YPDGFPEDEL bmy_18076T0/1-421 ---------- ---------- ---------- ---------- ---------- BACU002463/1-807 WFLNRNVSGF SITNRSSIKR LCIIESVFEG EGSATLMSAN YPDGFPEDEL 251 300 ENSP00000296129/1-836 MTWQFVVPAH LRASVSFLNF NLSNCERKEE RVEYYIPGST TNPEVFKLED ENSBTAP00000055250/1-836 MTWQFVIPAP LRASVSFLQF NVSNCVKKEE RVEYYIPGST TNPEVFKLED ENSTTRP00000006806/1-807 MTWQFIIPAH LRASVSFLHF NVSNCVKKEE RVEYCIPGST TNPEVFKLKD bmy_18076T0/1-421 ---------- ---------- ---------- ---------- ---------- BACU002463/1-807 MTWQFIIPAH LRASVSFLHF SVSNCVKKEE RVEYCIPGST TNREVFKLQD 301 350 ENSP00000296129/1-836 KQPGNMAGNF NLSLQGCDQD AQSPGILRLQ FQVLVQHPQN ESNKIYVVDL ENSBTAP00000055250/1-836 QQPGNMAGNF NLSLQGCDQD AQNPGILRLQ FQVSVQHPQN DSNKTYVVDL ENSTTRP00000006806/1-807 KQPGNIAGNF NLSLQGCDQD AQNPGILRLQ FQVLVQHPQN ESNKTYVVDL bmy_18076T0/1-421 ---------- ---------- ---------- ---------- ---------- BACU002463/1-807 KQPGNIAGNF NLSLQGCDQD VQNPGILRLQ FQVLVQHPQD ESNKTYMVDL 351 400 ENSP00000296129/1-836 SNERAMSLTI EPRPVKQSRK FVPGCFVCLE SRTCSSNLTL TSGSKHKISF ENSBTAP00000055250/1-836 SKERTMSLSI EPRPNKLKRE FVPSCFVCLN SRTCSTNLTL TAGSKHTISF ENSTTRP00000006806/1-807 SNEQAMSLTI EQRPGKLSRK FVPGCFVCLD SRTCSTNLTL TAGSKHKISF bmy_18076T0/1-421 -----MSLTI EQRPSKLSRK FVPGCFVCLD SRTCSTNLTL TAGSKHKISF BACU002463/1-807 SNERAMSLTI EQRPSKLSRK FVPGCFVCLD SRTCSTNLTL TAGSKHNISF 401 450 ENSP00000296129/1-836 LCDDLTRLWM NVEKTISCTD HRYCQRKSYS LQVPSDILHL PVELHDFSWK ENSBTAP00000055250/1-836 LCDDLTRLWI NAEKTISCLD HRYCHRMRYS LQLPPSVFQL PVQLHDFTWK ENSTTRP00000006806/1-807 LCDDLTRLWI NAEKTISCLD HRYCHRKAYS LQVPWYILQL PVQLHDFSWK bmy_18076T0/1-421 LCDDLTRLWI NAEKTISCLD HRYCHRTSYS LQVPWYIFQL PVQLHDFSWK BACU002463/1-807 LCDDLTRLWI NAEKTISCLD HRYCHRKSYS LQVPWYIFQL PVQLHDFSWK 451 500 ENSP00000296129/1-836 LLVPKDRLSL VLVPAQKLQQ HTHEKPCNTS FSYLVASAIP SQDLYFGSFC ENSBTAP00000055250/1-836 LLVPKDRLSL ALVPAQKLQQ HTHERVCNTS FSYLVASAVP GQNLYFGSFC ENSTTRP00000006806/1-807 LLVPKDSISL ALVPAQKLQQ HTHERVCNTS FSYLVASAVP GQDLYFGSFC bmy_18076T0/1-421 LLVPKDSISL ALVPARKLQQ HTHERVCNTS FSYLVASAVP GQDLSFGSFC BACU002463/1-807 LLVPKDSISL ALVPAQKLQQ HTHERVCNTS FSYLVASAVP GQDLSFGSFC 501 550 ENSP00000296129/1-836 PGGSIKQIQV KQNISVTLRT FAPSFQQEAS RQGLTVSFIP YFKEEGVFTV ENSBTAP00000055250/1-836 SGGSIEQIQV KENISVTLRT FAPNFQHESA KQDLTVSFIP HFKEESVFTV ENSTTRP00000006806/1-807 SGGSIEQIQV KQNVSVTLRA FAPSFQQEAS RQSLTVSFVP HFKEEGVFTV bmy_18076T0/1-421 SGGSIEQIRV KQNVSVTLRT FAPSFQQEAS RQSLAVSFIP HFKEEGVFTV BACU002463/1-807 SGGSIEQIQV KQNVSVTLRT FAPSFQQEAS RQSLAVSFIP HFKEEGVFTV 551 600 ENSP00000296129/1-836 TPDTKSKVYL RTPNWDRGLP SLTSVSWNIS VPRDQVACLT FFKERSGVVC ENSBTAP00000055250/1-836 TPDTKNKVYL RTPNWDRGLP SLASVSWNIS VPRNQVACLT FLKERTGVVC ENSTTRP00000006806/1-807 TLDTKSKVYL RTPNWDKGLP SLTSVSWNIS VPQDQVACLT FLKERTGVVC bmy_18076T0/1-421 TLDTKSKVYL RTPNWDRGLP SLTSVSWNIS VPQDQVACLT FLKERTGLVC BACU002463/1-807 TLDTKSKVYL RTPNWDRGLP SLTSVSWNIS VPQDQVACLT FLKERTGLVC 601 650 ENSP00000296129/1-836 QTGRAFMIIQ EQRTRAEEIF SLDEDVLPKP SFHHHSFWVN ISNCSPTSGK ENSBTAP00000055250/1-836 QTGRAFMIIQ EQRAHAEEIF SLEEEVLPKP SFRYHSFWVN ISNCSPMSGK ENSTTRP00000006806/1-807 QTGRAFMIIQ EQRAHTEEIF SLEEEVLPKP SFRYHSFWVN ISNCSPMSKK bmy_18076T0/1-421 QTGH------ ---------- ---------- ---------- ---------- BACU002463/1-807 QTGRAFMIIQ EQRAHTEEIF SLEEEVLPKP SFRYHSFWVN ISNCSPMSRK 651 700 ENSP00000296129/1-836 QLDLLFSVTL TPRTVDLTVI LIAAVGGGVL LLSALGLIIC CVKK-KKKKT ENSBTAP00000055250/1-836 QLDLLFWVSL TPRTTDLTVI ILTVVGGGAL LLFALGFIIC FVKKNKKKKI ENSTTRP00000006806/1-807 QLDLLFWVSL TPRTMDLTVI ILAVVGGGAL LLFALGLIIC FVKK-KKKKI bmy_18076T0/1-421 ---------- ------LTVI ILAVVGGGAL LLFALGLIVC FVKKNRKKKI BACU002463/1-807 QLDLLFWVSL TPRTMDLTVI ILAVVGGGAL LLFALGLIVC FVKK-KKKKI 701 750 ENSP00000296129/1-836 NKGPAVGIYN DNINTEMPRQ PKKFQKGRKD NDSHVYAVIE DTMVYGHLLQ ENSBTAP00000055250/1-836 TKGPAVGIYN GNVNTQMPMQ RKKFQKGRKD NDSHVYAVID DTMVYGHLLQ ENSTTRP00000006806/1-807 NKGPAVGIYN GNVNTQMPMQ PKTFQKRRKD NESHVYAEID DTMVYGHLLQ bmy_18076T0/1-421 NKGPAVGIYN GTVNTQMPMQ PKNFQKRQKD NDSHVYAVID DTMVYGHLLQ BACU002463/1-807 NKGPAVGIYN GNVNTQMPMQ PKIFQKRQTD NDSHVYAVID DTMVYGHLLQ 751 800 ENSP00000296129/1-836 DSSGSFLQPE VDTYRPFQGT MGVCPPSPPT ICSRAPTAKL ATEEPPPRSP ENSBTAP00000055250/1-836 DASGPFIQAE VDTYRPFQGP TGDFPPSPPP TNSKAPTVKL ATDEPPPGSP ENSTTRP00000006806/1-807 DSKGSFLQPK VDTYRPFQGP TGDCPPSPPR ICSRAPTAKL TEDEPSSGFL bmy_18076T0/1-421 DSKGSFLQPE VDTYRPFQGP TGDCPPSPPP ICSRAPTAKL TEDEPSSGFL BACU002463/1-807 DSKGSFLQPE VDTYRPFQGA TGDCPPSPPP VCSRAPTAKL TEDEPSSGFL 801 850 ENSP00000296129/1-836 PESESEPYTF SHPNNGDVSS KDTDIPLLNT QEPMEPAE ENSBTAP00000055250/1-836 SESESEPYTF SHPKDGKVSN RSTDTPLLDA HEPTEPGE ENSTTRP00000006806/1-807 SASESETYTF SYPSDRNISN GNTDPPLLET YETMEPGE bmy_18076T0/1-421 SESESEPYTF SHPKDRNISN GNTDPPLLEA YXTMEPGE BACU002463/1-807 SESESESYTF SHPKDRNINN GNTDLPLLET YETMEPGE