KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:14 2014 Check: 00 .. Name: ENSBTAP00000055272/1-258 Len: 351 Check: 9717 Weight: 1.00 Name: ENSP00000410403/1-316 Len: 351 Check: 2723 Weight: 1.00 Name: BACU010502/1-260 Len: 351 Check: 4153 Weight: 1.00 Name: bmy_00118T0/1-274 Len: 351 Check: 9586 Weight: 1.00 Name: ENSTTRP00000003863/1-259 Len: 351 Check: 1175 Weight: 1.00 // 1 50 ENSBTAP00000055272/1-258 ---------- ---------- ---------- ---------- ---------- ENSP00000410403/1-316 MSHLPGLELR REAPPLLGPL LSPFPLPAGS WHRQMLRSSL RFPITNSAGA BACU010502/1-260 ---------- ---------- ---------- ---------- ---------- bmy_00118T0/1-274 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003863/1-259 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000055272/1-258 -------MNI LAPVRRDRVL TKLPQCLRKE AALHVHKDFQ PRVTCACQEH ENSP00000410403/1-316 PCKAAGRMNI LAPVRRDRVL AELPQCLRKE AALHGHKDFH PRVTCACQEH BACU010502/1-260 -------MNI LAPVRRDRVL TELPQCLRKE AALHVHKGFH PRVTCACQEH bmy_00118T0/1-274 -------MNI LAPVRRDRVL TELPQCLRKE AALHVHKDFH PRVTCACQEH ENSTTRP00000003863/1-259 -------MNI LAPVRRDRVL TELPQYLRKE AALHVHKDFH PRVTCACQEH 101 150 ENSBTAP00000055272/1-258 RTGTVG-FKI SKVIVVGDLS VGKTCLINRF CKDTFDKNYK ATIGVDFEME ENSP00000410403/1-316 RTGTVG-FKI SKVIVVGDLS VGKTCLINRF CKDTFDKNYK ATIGVDFEME BACU010502/1-260 RTGTVGRFKI SKVIVVGDLS VGKTCLINRF CKDTFDKNYK ATIGVDFEME bmy_00118T0/1-274 RTGTVGRFKI SKVIVVGDLS VGKTCLINRF CKDTFDKNYK ATIGVDFEME ENSTTRP00000003863/1-259 RTGTVG-FKI SKVIVVGDLS VGKTCLINRF CKDTFDKNYK ATIGVDFEME 151 200 ENSBTAP00000055272/1-258 RFEVLGVPFS LQLWDTAGQE RFKCIASTYY RGAQAIIIVF NLNDVASLEH ENSP00000410403/1-316 RFEVLGIPFS LQLWDTAGQE RFKCIASTYY RGAQAIIIVF NLNDVASLEH BACU010502/1-260 RFEVLGVPFS LQLWDTAGQE RFKCIASTYY RGAQAIIIVF NLNDVASLEH bmy_00118T0/1-274 RFEVLGVPFS LQLWDTAGQE RFKCIASTYY RGAQAIIIVF NLNDVASLEH ENSTTRP00000003863/1-259 RFEVLGVPFS LQLWDTAGQE RFKCIASTYY RGAQAIIIVF NLNDVASLEH 201 250 ENSBTAP00000055272/1-258 TKHYNGGSEK RMFKKRRVRS MEGKEKSAFR TRGSVIGHRS GGSLSGSLIP ENSP00000410403/1-316 TKQWLADAL- ---------- ---KENDPSS VLLFLVGSKK DLS-----TP BACU010502/1-260 TKQWLADAL- ---------- ---KENDPSS VLLFLVGSKK DLS-----TP bmy_00118T0/1-274 TKQWLADAL- ---------- ---KENDPSS VLLFLVGSKK DLS-----TP ENSTTRP00000003863/1-259 TKQWLADAL- ---------- ---KENDPSS VLLFLVGSKK DLS-----TP 251 300 ENSBTAP00000055272/1-258 CCPLSMAADA LKVAQEMKAE YWAVSSLT-- ---------- --GESEAPGL ENSP00000410403/1-316 AQYALMEKDA LQVAQEMKAE YWAVSSLT-- ---------- --GEN-VREF BACU010502/1-260 AQYTLMEKDA LKVAQEMKAE YWAVSSLT-- ---------- --GEN-VREF bmy_00118T0/1-274 AQYMLMEKDA LKVAQEMKAE YWAVSSLTGL ELPLSTHLLP VSGEN-VREF ENSTTRP00000003863/1-259 AQYMLMEKDA LKVAQEMKAE YWAVSSLT-- ---------- --GEN-VREF 301 350 ENSBTAP00000055272/1-258 PACLASHSYT SSC------- -APRPGTTLE LLSAP----- --------CV ENSP00000410403/1-316 FFRVAALTFE ANVLAELEKS GARRIGDVVR INSDDSNLYL TASKKKPTCC BACU010502/1-260 FFRVTALTFE ANVLAELEKS GSRRIGDVVR INSDDSNLYL TSSKKKPMCC bmy_00118T0/1-274 FFRVTALTFE ANVLAELEKS GSRRIGDVVR INSDDSNLYL TASKKKPMCC ENSTTRP00000003863/1-259 FFRVTALTFE ANVLAELEKS GSRRIGDVIR INSDDSNLYL TASKKKPMCC 351 400 ENSBTAP00000055272/1-258 R ENSP00000410403/1-316 P BACU010502/1-260 P bmy_00118T0/1-274 P ENSTTRP00000003863/1-259 P